BAC Information

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BAC

Clone NameB6Ng01-070D12
Chromosome7 (Build37)
Map Location 23,309,724 - 23,310,964
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043016, LOC100043602, LOC100043604, EG667378, LOC100043607, LOC100043019, LOC100043025, EG667404, EG435940, LOC100043026, EG545929, LOC667421, LOC100043614, LOC667431, LOC100043029, EG620736, EG667444, LOC100043033, LOC100043037, EG667464, EG667469, EG667472, EG667094, LOC100043625, LOC100043626, LOC100043043, LOC100043048, LOC100043632, EG667485, V1rd14, LOC100043051, LOC100043058, EG435947, EG667504
Downstream geneEG667512, LOC100043061, LOC100043638, LOC667527, EG667530, LOC667536, EG667543, LOC100043645, EG667551, LOC100043650, LOC100043067, LOC100043069, LOC670857, LOC620758, EG667570, LOC100043658, LOC100043079, LOC100043083, EG667586, EG667599, LOC100043086, LOC100043665, LOC667616, LOC100043667, LOC667623, LOC100043088, EG628664, Nlrp4e, LOC434261, Nlrp5, LOC100043095, EG622032
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-070D12.bB6Ng01-070D12.g
ACCDH888287DH888288
length1,2361,208
definitionDH888287|Mus musculus domesticus DNA, BAC clone: B6Ng01-070D12, 5' end.DH888288|Mus musculus domesticus DNA, BAC clone: B6Ng01-070D12, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccttacaaccccatgggacaaggaatagttgaacgtgctcaccgc
accttaaagaattggctttttaagacaaaagagggtcagctatatccccc
aaggtcaccaaaggcccaccttgccttcactttatttgtcctaaatttct
tgcacaccgatatcaagggccagtctgcagcggatcaccactggcatcca
gttacttctaattcttatgcattggtaaaatggaaggaccccctgactaa
tgaatggaagggtccagatccagttctaatttggggtaggggctcagttt
gtgttttttcacgagatgaagatggagcgcggtggctgccagagagatta
attcgtcagatgaacacagattctgactcttctggtaagtatcattctaa
agactaaaattccttttgtgcttaaaattcagctgagagcaacagctctc
aaagctgttctccagctactctctgagccagctcccgacaggaggccgga
gactagcctcagctttacaatttgcatttgaataaagtacctagacttcc
ccgaaagaagttctgctttcctactttctcactgtctttcaagattttgt
ctttcaagcaggtaaatcaacattctcgaggcggaccagcggatgtgcat
ccccgcccccctagagcacacaggtggcagctgttacccccagtctcagg
acatttccagcacgtggttttcagtctgagttaaaaatttaggtttacct
agagggttagaagagtagatatttctatattaataaagattggtttttat
ttcgatagacaggcttagccccttagctgacctctggcttttcacccttg
ctgttgctgcaaggtgtccttagctcaataggctgtggaaaaacagggat
gaggaggaacgacttccagctcctatttagccacaatcgtggtgttacta
acgacataattcttgcttagctttgctattctgagtgatattctccttta
ggagctgcacagcactcagactgtgcatactggtttgtgatgtacaattc
agtatgggcaccgctgtgcagagatactgcaagggagttcgctgaccatt
tctgagtttctgtgagataaccgatcaagaggtggatcaattttggtaaa
taaaaatttcgctacctgcctccagtaccgagtccaatgtggttaccagg
gagaatcggtccgatccatcccagcccaagggtatg
gaattcttgggggtcttgagaaggtatttgtgtgagatcccctagatggc
ctgtggtggctcctgctttgcctgctgctgtcagtcccctttgctgctgt
acctgctcctgattttgctattgatgaattattgtttggctgtcttgttt
gacttctggttagatatatcatgatgatagattttggacttatcaaaacc
aacatcagaggtctacactccttttcctctataactattctttactactg
agtgttggttggaaatattgtgctgaaaaaactgttggaagggtagtaga
taatacagtccaataacgtacaccaaaataatgcttagagataagggtat
atacagattaacaggcagagatcagtgttataggatacactgaactgatt
aaagtgaacttagaaaatacactttttttcttttcagtgtgtggacatgt
tcaagcacagatttgaggaaggcagagtacaattgtaggagtttgttctc
tccactaggtaggacctgggataatcatttctaagttgtgagtgctttag
ctgctgagctgtcttgctgattcttattatggccagtgttattatcaagg
cttggtgctgtgggattgtcatttttattgttggtagaggtctgtgaaca
tgtacatgaagagtctcggtattaatttcataactcagtgcaaatctatc
ctcaatatagaacatacaaactgttggttcatattctattatttcaagct
ctttcaatatacctgatattgatgatttcctactcccccaaattggaagt
gaagagttaagtgtgttgggataaatttttcagtgtgggcctcaagagat
ggctcagcaggttggaagcctggccatatttacattggatcagagctcga
ttctgagaaactatcttgtaggcttacatcagtttgtaactccagctcta
ggggtatgacacctattctccttaagaggagggaatcccacaaatacata
catacccatacatatgaacaaaaaaatgatgctaaaatattctttgtcac
gagtagtaccacagtcagattatagttcatccactgacagctataccacc
ctgaattatcttgtgggtctttagcttggccattccaagaagctgaaaat
tagattctgattaacttggataatttgcatggaagccactggacagtggt
aagtgaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_23309724_23310964
seq2: B6Ng01-070D12.g_67_1274 (reverse)

seq1  TGTCACT--CCATCTGT-CAGTGGCTTTCTCAATCGCAAAATTATTTTCT  47
      |||||||  ||| |||| ||||||||   || || |||||      || |
seq2  TGTCACTTACCA-CTGTCCAGTGGCT---TCCAT-GCAAA------TTAT  39

seq1  CAAAAGATTAAAATCAAGAATCTAATATTTTCAGCTACTTGAGAATGACC  97
      | ||   ||  |||| ||||||||  |||||||||| |||| ||||| ||
seq2  CCAA--GTT--AATC-AGAATCTA--ATTTTCAGCTTCTTG-GAATGGCC  81

seq1  AAGGCTAGAAAGA-CCACAAGATAAATACCAGGGGTGGTTATAGCTGTCA  146
      || |||  ||||| ||||||||||| |  || |||||| |||||||||||
seq2  AA-GCT--AAAGACCCACAAGATAATT--CA-GGGTGG-TATAGCTGTCA  124

seq1  GTGTGATGAAACTTATAATCTGACTTGTGGTACTTACTTCTGTGAACAAA  196
      ||| ||||||   ||||||||||| |||||||| ||||  ||   |||||
seq2  GTG-GATGAA--CTATAATCTGAC-TGTGGTAC-TACTCGTG---ACAAA  166

seq1  GAATATTTTAGCATTCATTTTTTTGTTCATATGTATTGGGTATGTATGTA  246
      ||||||||||||| ||||||||||||||||||||| ||||||||||||||
seq2  GAATATTTTAGCA-TCATTTTTTTGTTCATATGTA-TGGGTATGTATGTA  214

seq1  TTTGTGGGGATTCCCTCCTCTTAAGGAGAATAGGTGTCATACCCCTAGAG  296
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGT-GGGATTCCCTCCTCTTAAGGAGAATAGGTGTCATACCCCTAGAG  263

seq1  CTGGAGTTACAAACTGATGTAAGCCTACAAAGATAGTTTCTCAGAATCGA  346
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTGGAGTTACAAACTGATGTAAGCCTAC-AAGATAGTTTCTCAGAATCGA  312

seq1  GCTCTGATCCAATGTAAATATGGCCAGGCTTCCAACCTGCTGAGCCATCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGATCCAATGTAAATATGGCCAGGCTTCCAACCTGCTGAGCCATCT  362

seq1  CTTGAGGCCCACACTGAAAAATTTAT-CCAACACACTTAACTCTTCACTT  445
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTTGAGGCCCACACTGAAAAATTTATCCCAACACACTTAACTCTTCACTT  412

seq1  CCAATTTGGGGGAGTAGGAAATCATCAATATCAGGTATATTGAAAGAGCT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTTGGGGGAGTAGGAAATCATCAATATCAGGTATATTGAAAGAGCT  462

seq1  TGAAATAATAGAATATGAACCAACAGTTTGTATGTTCTATATTGAGGATA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATAATAGAATATGAACCAACAGTTTGTATGTTCTATATTGAGGATA  512

seq1  GATTTGCACTGAGTTATGAAATTAATACCGAGACTCTTCATGTACATGTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGCACTGAGTTATGAAATTAATACCGAGACTCTTCATGTACATGTT  562

seq1  CACAGACCTCTACCAACAATAAAAATGACAATCCCACAGCACCAAGCCTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGACCTCTACCAACAATAAAAATGACAATCCCACAGCACCAAGCCTT  612

seq1  GATAATAACACTGGCCATAATAAGAATCAGCAAGACAGCTCAGCAGCTAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATAACACTGGCCATAATAAGAATCAGCAAGACAGCTCAGCAGCTAA  662

seq1  AGCACTCACAACTTAGAAATGATTATCCCAGGTCCTACCTAGTGGAGAGA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTCACAACTTAGAAATGATTATCCCAGGTCCTACCTAGTGGAGAGA  712

seq1  ACAAACTCCTACAATTGTACTCTGCCTTCCTCAAATCTGTGCTTGAACAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACTCCTACAATTGTACTCTGCCTTCCTCAAATCTGTGCTTGAACAT  762

seq1  GTCCACACACTGAAAAGAAAAAAAGTGTATTTTCTAAGTTCACTTTAATC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACACACTGAAAAGAAAAAAAGTGTATTTTCTAAGTTCACTTTAATC  812

seq1  AGTTCAGTGTATCCTATAACACTGATCTCTGCCTGTTAATCTGTATATAC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAGTGTATCCTATAACACTGATCTCTGCCTGTTAATCTGTATATAC  862

seq1  CCTTATCTCTAAGCATTATTTTGGTGTACGTTATTGGACTGTATTATCTA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATCTCTAAGCATTATTTTGGTGTACGTTATTGGACTGTATTATCTA  912

seq1  CTACCCTTCCAACAGTTTTTTCAGCACAATATTTCCAACCAACACTCAGT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCTTCCAACAGTTTTTTCAGCACAATATTTCCAACCAACACTCAGT  962

seq1  AGTAAAGAATAGTTATAGAGGAAAAGGAGTGTAGACCTCTGATGTTGGTT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAGAATAGTTATAGAGGAAAAGGAGTGTAGACCTCTGATGTTGGTT  1012

seq1  TTGATAAGTCCAAAATCTATCATCATGATATATCTAACCAGAAGTCAAAC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAAGTCCAAAATCTATCATCATGATATATCTAACCAGAAGTCAAAC  1062

seq1  AAGACAGCCAAACAATAATTCATCAATAGCAAAATCAGGAGCAGGTACAG  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGCCAAACAATAATTCATCAATAGCAAAATCAGGAGCAGGTACAG  1112

seq1  CAGCAAAGGGGACTGACAGCAGCAGGCAAAGCAGGAGCCACCACAGGCCA  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAAGGGGACTGACAGCAGCAGGCAAAGCAGGAGCCACCACAGGCCA  1162

seq1  TCTAGGGGATCTCACACAAATACCTTCTCAAGACCCCCAAGAATTC  1241
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGGGATCTCACACAAATACCTTCTCAAGACCCCCAAGAATTC  1208