BAC Information

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BAC

Clone NameB6Ng01-070H01
Chromosome7 (Build37)
Map Location 51,243,605 - 51,244,804
singlet/doubletsinglet
Overlap geneKlk1b10-ps
Upstream geneLOC668612, LOC385199, LOC100039589, EG668620, Zfp715, Siglecf, Siglecg, LOC100039610, Lim2, Nkg7, Cldnd2, Etfb, 2210412E05Rik, A230106M20Rik, 4931406B18Rik, LOC668630, LOC100039946, Cd33, BC043301, Zfp719, 4933405K07Rik, Ceacam18, Siglece, Atpbd3, Klk14, Klk13, Klk12, Klk11, Klk10, Klk9, Klk8, Klk7, Klk6, Klk5, Klk4, Klk2-ps, Klk15, Klk1b7-ps, Klk1b8, Klk1b1, Klk1b9
Downstream geneKlk1b11, LOC100039713, Klk1b26, Klk1b18-ps, Klk1b27, Klk1b14-ps, Klk1b15-ps, Klk1b21, Klk1b22, Klk1b16, Klk1b24, Klk1b3, Klk1b4, Klk1b5, Klk1, 1700028J19Rik, LOC668661, Acpt, LOC628854, EG638453, Clec11a, Shank1, 1700008O03Rik, Syt3, Lrrc4b, 0610012D14Rik, Josd2, 2310044H10Rik, 1700021P22Rik, Mybpc2, Spib, Pold1, Nr1h2, Napsa, Kcnc3, Myh14, 1700023D19Rik, Zfp473, Vrk3, EG628904, Atf5, Nup62, Il4i1, Tbc1d17, Akt1s1, Pnkp, Ptov1, Med25, Fuz, Ap2a1, Stk22s1, Cpt1c, Prmt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-070H01.bB6Ng01-070H01.g
ACCDH888445DH888446
length1,2691,175
definitionDH888445|Mus musculus domesticus DNA, BAC clone: B6Ng01-070H01, 5' end.DH888446|Mus musculus domesticus DNA, BAC clone: B6Ng01-070H01, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctaccatatgttcaaagaagagctaatgccaatactcttcaaatt
actccacaaaaaaggaacagaaggaacattacaaaattcactttatgagg
ccacaatcaccttgatacctgaaccacacaaagattcaacaaaaaaagag
aattacagaccaatttctcttatgaacatagatgccaaaatactcaataa
aatatttgcaaaccaaatctaagaacacatcaaaaagatcatccaccacg
accaagtaggcgtcaacccaaagatgcagggttgagtcaacatacaagaa
tcagtcaatattatagatcataaaaacaaactgaaagaaaaatatgatga
tctcattagatatcaaagacagcctttgacaaaatccaaaacacccttca
tgataaaagtattggagagattagggatacaaagaacataccagacataa
tggaggcaatttacagcaagcctataggcaacatcaaactaactggagag
aaacaccaagcaattccactaaaatcagtgacaagacaaggctgcccagt
ctccttatatttattcaatgccgtacttgaagttctagttagagcagtaa
gacaactaagagatcaagaagatacaaggtagaaagaagtcaaatattgt
catttgcagatgatataataatacacataagcgaccccaataattctacc
agagaacttctcgtacagctgatagacaccatcaatgaagtggctggata
gaagattaactaacaaaaataaaataaaataaaataaaataaaataagta
aataaataaaaattaaaattaaacacaaaatggtagcccacatatataca
aacaataaatgggctgaacaagaaattaaggaaacaacatctttcacaat
aaccacaaataatataaaatatcttggggtgactctaaccaagcaagtga
aagatctgtatgacaagaacttcaagtctctgaagaaagaaattgaagac
gttttcagaagatggaaagatcttccatgttcatgggtcattagatttaa
catagtagaaatgcatattaccaaagcaatcttcaaattcaacacaattc
ccatcaaattccaaccaattctttaaagactgaagaacaatattcaactt
catatggaaaaacaaaaactagattcttagcattcctgtccagataaaga
ctcaagatgaacatcctattcagctgtactcgagctacggtaacaccacc
gccattgtattggccttat
gaattctggaaaggtgaggtgtcagaaaactagatttgaatgaataaata
aatccaggaaagggagcttagggttgatttggggtttcttggattgggca
tgaagtggcagctgggatgaagagattgaggtatttccaggtaaaaggag
cagggtcaaggctagggcgtgggctcattttaggttctgtggtggagatg
acatctaagaggggtggggctcccttaaaaaggagtttgagatgggacaa
gcagagagagaaggaaattctgggggtctgtgaggaaaaggctctgctcc
ctgtggaggtgggcaaatcatctgggtattggagaatctcagggttctct
tggaggcagcctctggacaggagtggaaaaggaattaaagactctggaca
gaagtggaaacacacttagagcaagtcaggccactttgaggcagagcgga
ggacccagctgatgtgagggtctttggggtgtcctgcacagagtgagaac
tagagcaattcagtggggctctggtgagaggagacaggagcctccggctc
agggagtgaggcaagagaggaaagaggaggacaaagcacggcatttggaa
acagtaaatctttgcaagccatgcacagccacacttctctgtagcctcat
tacccagcaggctgacacagagggattgccatggactgatgtcaagcctg
ggctatatcatgagatactaactcagaacttattcccaagagctgggaat
gcgatggcttggctgctacaggattggccatgcaagcattaggacctgag
ctgaaccctccagaacacagggaaaaagtcaggtaggatgctgtgtgcct
gtaaccccagagctgggtaggtggaaccaggaggattcccttgagttttg
cagaacagtcatcttagcctaaacagaagtctccatttgtgagagaccct
gccatgtgtgagtgattgatgagatactgttgtcaatgctagcgtctgcc
aactgacctttctccaaaatgagactaaaccaaaagccagcgagagtgac
atggcaattctcttccacacagaaagtagggttacccatcctgacttaca
agccacatgagaagagaagtttggtgactaacttctggatagtatgggga
acctgtctatgtgcaacacaactga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_51243605_51244804
seq2: B6Ng01-070H01.g_64_1238 (reverse)

seq1  TCAGTTGTGTTTGCCACATAATGACAAGTGGTCCCCCATCATCCCAAGAA  50
      |||||||||||   ||||||  ||||   ||| ||||||  |  | ||||
seq2  TCAGTTGTGTT--GCACATA--GACA---GGTTCCCCATACTATCCAGAA  43

seq1  GCTCAGGTTCTACCAAAACTTCCTCTTCTCATGTTGGCTTGTAAGGTCA-  99
      | | ||  || ||| |||||| ||||||||||| |||||||||| |||| 
seq2  G-TTAG--TC-ACC-AAACTT-CTCTTCTCATG-TGGCTTGTAA-GTCAG  85

seq1  GATGGGTTACCCCTCCCTTTCTGGTGTGG-AGAGAATGCCCATGTCACTT  148
      ||||||| ||||    |||||| |||||| |||||||  ||||||||| |
seq2  GATGGGTAACCC--TACTTTCT-GTGTGGAAGAGAATTGCCATGTCAC-T  131

seq1  CTCGCTGGCTTTTTGGTTTAGTCTCATTTTTGGAGAAAGGGTCAGTTGGC  198
      ||||||||| |||||||||||||||| ||||||||||| |||||||||||
seq2  CTCGCTGGC-TTTTGGTTTAGTCTCA-TTTTGGAGAAA-GGTCAGTTGGC  178

seq1  AGACGCTAGCATTGGACAACAAGTATCTTCATCAATCACTCACAACATTG  248
      ||||||||||||| |||||| |||||| ||||||||||||||| ||| ||
seq2  AGACGCTAGCATT-GACAAC-AGTATC-TCATCAATCACTCAC-ACA-TG  223

seq1  GCAGGGTCTCTCACAAATGGAGACTTCTGTTTAGGCTAAGATGACTGTTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGTCTCTCACAAATGGAGACTTCTGTTTAGGCTAAGATGACTGTTC  273

seq1  TGCAAAACTCAAGGGAATCCTCCTGGTTCCACCTACCCAGCTCTGGGGTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAACTCAAGGGAATCCTCCTGGTTCCACCTACCCAGCTCTGGGGTT  323

seq1  ACAGGCACACAGCATCCTACCTGACTTTTTCCCTGTGTTCTGGAGGGTTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCACACAGCATCCTACCTGACTTTTTCCCTGTGTTCTGGAGGGTTC  373

seq1  AGCTCAGGTCCTAATGCTTGCATGGCCAATCCTGTAGCAGCCAAGCCATC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGGTCCTAATGCTTGCATGGCCAATCCTGTAGCAGCCAAGCCATC  423

seq1  GCATTCCCAGCTCTTGGGAATAAGTTCTGAGTTAGTATCTCATGATATAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCCCAGCTCTTGGGAATAAGTTCTGAGTTAGTATCTCATGATATAG  473

seq1  CCCAGGCTTGACATCAGTCCATGGCAATCCCTCTGTGTCAGCCTGCTGGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGCTTGACATCAGTCCATGGCAATCCCTCTGTGTCAGCCTGCTGGG  523

seq1  TAATGAGGCTACAGAGAAGTGTGGCTGTGCATGGCTTGCAAAGATTTACT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAGGCTACAGAGAAGTGTGGCTGTGCATGGCTTGCAAAGATTTACT  573

seq1  GTTTCCAAATGCCGTGCTTTGTCCTCCTCTTTCCTCTCTTGCCTCACTCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCAAATGCCGTGCTTTGTCCTCCTCTTTCCTCTCTTGCCTCACTCC  623

seq1  CTGAGCCGGAGGCTCCTGTCTCCTCTCACCAGAGCCCCACTGAATTGCTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCCGGAGGCTCCTGTCTCCTCTCACCAGAGCCCCACTGAATTGCTC  673

seq1  TAGTTCTCACTCTGTGCAGGACACCCCAAAGACCCTCACATCAGCTGGGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCTCACTCTGTGCAGGACACCCCAAAGACCCTCACATCAGCTGGGT  723

seq1  CCTCCGCTCTGCCTCAAAGTGGCCTGACTTGCTCTAAGTGTGTTTCCACT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCGCTCTGCCTCAAAGTGGCCTGACTTGCTCTAAGTGTGTTTCCACT  773

seq1  TCTGTCCAGAGTCTTTAATTCCTTTTCCACTCCTGTCCAGAGGCTGCCTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCCAGAGTCTTTAATTCCTTTTCCACTCCTGTCCAGAGGCTGCCTC  823

seq1  CAAGAGAACCCTGAGATTCTCCAATACCCAGATGATTTGCCCACCTCCAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGAACCCTGAGATTCTCCAATACCCAGATGATTTGCCCACCTCCAC  873

seq1  AGGGAGCAGAGCCTTTTCCTCACAGACCCCCAGAATTTCCTTCTCTCTCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGCAGAGCCTTTTCCTCACAGACCCCCAGAATTTCCTTCTCTCTCT  923

seq1  GCTTGTCCCATCTCAAACTCCTTTTTAAGGGAGCCCCACCCCTCTTAGAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTCCCATCTCAAACTCCTTTTTAAGGGAGCCCCACCCCTCTTAGAT  973

seq1  GTCATCTCCACCACAGAACCTAAAATGAGCCCACGCCCTAGCCTTGACCC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCTCCACCACAGAACCTAAAATGAGCCCACGCCCTAGCCTTGACCC  1023

seq1  TGCTCCTTTTACCTGGAAATACCTCAATCTCTTCATCCCAGCTGCCACTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCTTTTACCTGGAAATACCTCAATCTCTTCATCCCAGCTGCCACTT  1073

seq1  CATGCCCAATCCAAGAAACCCCAAATCAACCCTAAGCTCCCTTTCCTGGA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCCAATCCAAGAAACCCCAAATCAACCCTAAGCTCCCTTTCCTGGA  1123

seq1  TTTATTTATTCATTCAAATCTAGTTTTCTGACACCTCACCTTTCCAGAAT  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTATTCATTCAAATCTAGTTTTCTGACACCTCACCTTTCCAGAAT  1173

seq1  TC  1200
      ||
seq2  TC  1175