BAC Information

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BAC

Clone NameB6Ng01-070H08
Chromosome7 (Build37)
Map Location 19,919,609 - 20,069,080
singlet/doubletdoublet
Overlap geneD830036C21Rik, Ercc1, Cd3eap, Ppp1r13l, Ercc2, Klc3, Ckm, Mark4
Upstream genePsg18, LOC546936, Psg28, LOC666831, EG574429, EG232930, Psg25, EG545925, Psg23, Psg21, EG434540, BC050099, LOC666863, Sycp1-ps1, Psg19, Psg17, Mill2, Pglyrp1, C530028I08Rik, Nova2, Nanos2, P42pop, Irf2bp1, Foxa3, Sympk, Rshl1, Dmwd, Dmpk, Six5, EG243866, Fbxo46, Qpctl, Snrpd2, Gipr, Eml2, Gpr4, Opa3, Vasp, C79127, Rtn2, Fosb
Downstream gene4933417E01Rik, Bloc1s3, Trappc6a, Nkpd1, BC024868, Gemin7, Zfp296, Sfrs16, Relb, Clptm1, Apoc2, Apoc4, Apoc1, Apoe, Tomm40, Pvrl2, Bcam, Cblc, Bcl3, Ceacam16, Ceacam19, Pvr, 2210010C17Rik, EG243872, Ceacam20, Nlrp9b, EG667040, EG667067, LOC620401, V1rd21, EG620537, LOC100043519, EG620574, LOC100043523, EG545926, LOC100043528, LOC100042964, LOC100042966, LOC100043533, EG435949, LOC100043536, LOC100042968, LOC100042971
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-070H08.bB6Ng01-070H08.g
ACCDH888459DH888460
length8721,021
definitionDH888459|Mus musculus domesticus DNA, BAC clone: B6Ng01-070H08, 5' end.DH888460|Mus musculus domesticus DNA, BAC clone: B6Ng01-070H08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,919,609 - 19,920,476)(20,068,042 - 20,069,080)
sequence
gaattctgtggtcagacttggtaacaagtgcctttacctgatggacccca
acatacattttttacatttttatggctcttctttgtgctaggcctggtgc
ttggccatgaatgcagcttaaccctcatccgtatctcatccacagtgcac
tgtaagatgctcacatcagccagcgaggaccacagagactctcagggcca
ggctctagctcagtctatgtctgtggacagggaggtgactgcctgccttg
tgaggggctcagacgagcagccattggagatgtggggctataatgcaagg
tgtatcataatgctgcccccaggactcaaaataatggaggtcagggctag
ttctgggaagccttggagtgacacaggggattgattaattatgaattttg
ctgcctcggctgaaaactggtttacaaaaatgtattggcttaccaaataa
gtagaaacagcgacagtggaagttggggggaaaaaagagaaaaaaataac
tatcacagcttcatgcacagctttgataccgtgactgtggttactgtctg
caggtccacagctctctttgattcctccaaggcaggctctccacatcatt
aattaactatttaacatttgcctgtgtgtgcccctcctccctttctctct
ctctctctctctctctctctctctctctctctctctctctctctgtgtct
ctctctctctctcaccttccctctctgtgtagtcagggaggtcctgaaaa
ctgacaaaaaagaccaaaaacgccatgaactcgcaaataataccagcctt
tgttcccacagtgatggggataaaagctggtctccctttaaatttgcttt
tttcttttctcttttctccctg
gaattctgattgcttgtgagagaactctaagaaaccaagagtcttgtgat
agcagtttcttttaaaacaaaacaaaacaaaacacggaattgttcctgga
ttacgcttgcgtgcctctcccagatgcagtggattgaagtgagttcactt
cagattattacaactggctactcatattcttttctatgcctctatggaaa
aacatgttttgaccacgtgtgtggcttgcccgccaaatgcggtttgtcct
tgtgattggacattttattcctgtgactcttagcccctagaatatgaatc
gcctgaggctctgaacaaagatggctactacaggagactttactctgcct
cactgattggccccattctcccagggcaaattgtctccagatatttcttc
accaagacaagtggttcggagcttgctctgcagatctgcctgcctctgcc
tcctgagctctgggattaggtgtgtgccaccacaatcagctatacttatg
ggtttttttttttttttttttttagtgcattggtaagtgtacctatctgt
cagaatatatgagggggatactagtgatattgatttcttccaaatgggcc
agaataatgggtaaagaggcttctcactgccagcctgttcaccaccacca
ccaccaccaccatcaccaccaccaccaccaccaccatcaccaccaccacc
accaccaccatcaccaccaccaccaccatcaccaccaccaccaccaccac
catcaccaccaccaccaccacaccaccacaccacatcacaccaccaacac
caacacaccactactacatcactacacatcatcatcacatcatcatttat
agggtacgtctgccatagcgtatgtgtgtagttcaaaggacgtctgagaa
ggtcagttctttcttttacacagggatccaaggaacagatcctgggtatc
cattggtggctgcaagtgatttctcactgactgatctccagtttttaaaa
gcaatcagggggtgcagctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_19919609_19920476
seq2: B6Ng01-070H08.b_47_918

seq1  GAATTCTGTGGTCAGACTTGGTAACAAGTGCCTTTACCTGATGGACCCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGGTCAGACTTGGTAACAAGTGCCTTTACCTGATGGACCCCA  50

seq1  ACATACATTTTTTACATTTTTATGGCTCTTCTTTGTGCTAGGCCTGGTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACATTTTTTACATTTTTATGGCTCTTCTTTGTGCTAGGCCTGGTGC  100

seq1  TTGGCCATGAATGCAGCTTAACCCTCATCCGTATCTCATCCACAGTGCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCATGAATGCAGCTTAACCCTCATCCGTATCTCATCCACAGTGCAC  150

seq1  TGTAAGATGCTCACATCAGCCAGCGAGGACCACAGAGACTCTCAGGGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGATGCTCACATCAGCCAGCGAGGACCACAGAGACTCTCAGGGCCA  200

seq1  GGCTCTAGCTCAGTCTATGTCTGTGGACAGGGAGGTGACTGCCTGCCTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTAGCTCAGTCTATGTCTGTGGACAGGGAGGTGACTGCCTGCCTTG  250

seq1  TGAGGGGCTCAGACGAGCAGCCATTGGAGATGTGGGGCTATAATGCAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGGCTCAGACGAGCAGCCATTGGAGATGTGGGGCTATAATGCAAGG  300

seq1  TGTATCATAATGCTGCCCCCAGGACTCAAAATAATGGAGGTCAGGGCTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCATAATGCTGCCCCCAGGACTCAAAATAATGGAGGTCAGGGCTAG  350

seq1  TTCTGGGAAGCCTTGGAGTGACACAGGGGATTGATTAATTATGAATTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGAAGCCTTGGAGTGACACAGGGGATTGATTAATTATGAATTTTG  400

seq1  CTGCCTCGGCTGAAAACTGGTTTACAAAAATGTATTGGCTTACCAAATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCGGCTGAAAACTGGTTTACAAAAATGTATTGGCTTACCAAATAA  450

seq1  GTAGAAACAGCGACAGTGGAAGTTGGGGGGAAAAAAGAGAAAAAAATAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAACAGCGACAGTGGAAGTTGGGGGGAAAAAAGAGAAAAAAATAAC  500

seq1  TATCACAGCTTCATGCACAGCTTTGATACCGTGACTGTGGTTACTGTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACAGCTTCATGCACAGCTTTGATACCGTGACTGTGGTTACTGTCTG  550

seq1  CAGGTCCACAGCTCTCTTTGATTCCTCCAAGGCAGGCTCTCCACATCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCCACAGCTCTCTTTGATTCCTCCAAGGCAGGCTCTCCACATCATT  600

seq1  AATTAACTATTTAACATTTGCCTGTGTGTGCCCCTCCTCCCTTTCTCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAACTATTTAACATTTGCCTGTGTGTGCCCCTCCTCCCTTTCTCTCT  650

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCT  700
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTCT  700

seq1  CTCTGTCTCTCTCTCCTTCTTTCTCTGTGTAGTCCTGGCTGTCCT-AGAA  749
      |||| |||||||| |||||  |||||||||||||  ||  ||||| | ||
seq2  CTCTCTCTCTCTCACCTTCCCTCTCTGTGTAGTCAGGGAGGTCCTGAAAA  750

seq1  CTTACTCAGTAGACCAGGCTAGCCTTGAACTC-AGAGTTATGCCTGCCTC  798
      || ||  |  ||||||     ||| |||||||   | | || || |||| 
seq2  CTGACAAAAAAGACCAAAAACGCCATGAACTCGCAAATAATACCAGCCTT  800

seq1  TGTTTCCCCAGTGCTGGGGTTAAAGGCCTGCGCCACCACCT--GGCTGCT  846
      |||| || ||||| ||||| |||| | ||| | | ||   |     ||||
seq2  TGTTCCCACAGTGATGGGGATAAAAG-CTG-GTCTCCCTTTAAATTTGCT  848

seq1  TTTTTCCTTTCATCTT---TCCCTG  868
      |||||| |||| ||||   ||||||
seq2  TTTTTCTTTTC-TCTTTTCTCCCTG  872

seq1: chr7_20068042_20069080
seq2: B6Ng01-070H08.g_66_1086 (reverse)

seq1  TGAGCTGCACCCCTTGAATGGCTTTTATAAAACTGGAGAGTCAGGTCAGT  50
      ||||||||||||| || || ||||||| ||||||||||| ||| ||||||
seq2  TGAGCTGCACCCCCTG-ATTGCTTTTA-AAAACTGGAGA-TCA-GTCAGT  46

seq1  GAGAAAATCACTTGCAGCCACACATGATAACCCAGAGTTCTGTCCCTGGG  100
      ||| |||||||||||||||||  |||   |||||| | ||||| ||| ||
seq2  GAG-AAATCACTTGCAGCCACCAATGGATACCCAG-GATCTGTTCCTTGG  94

seq1  ATCCCTGTGGTAAAAGGAGAGAACTGACTCTCTCAGGACGTCCTCTGAAC  150
      |||||||| |||||| || |||||||||  ||||| |||||||| |||||
seq2  ATCCCTGT-GTAAAA-GAAAGAACTGACCTTCTCA-GACGTCCTTTGAAC  141

seq1  TTCACACATACGCTATGGCAGACGTACCCTATAGATGATGATGGTGATGA  200
      | ||||||||||||||||||||||||||||||| |||||||| |||||||
seq2  TACACACATACGCTATGGCAGACGTACCCTATAAATGATGAT-GTGATGA  190

seq1  TGATGGTGGTAGTGATGGTAGTAGTGGTGGTGGTGGTGGTGGTGGTGGTG  250
      |||||   |||||||| ||||||||||| ||| ||||| ||||||| |||
seq2  TGATG--TGTAGTGAT-GTAGTAGTGGT-GTGTTGGTGTTGGTGGT-GTG  235

seq1  ATGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGATGGTGGTGGTGGT  300
      || ||||| |||||||| ||||||||||||||||||||||||||||||||
seq2  AT-GTGGT-GTGGTGGT-GTGGTGGTGGTGGTGGTGATGGTGGTGGTGGT  282

seq1  GGTGGTGGTGATGGTGGTGGTGGTGGTGATGGTGGTGGTGGTGGTGGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTGGTGATGGTGGTGGTGGTGGTGATGGTGGTGGTGGTGGTGGTGG  332

seq1  TGATGGTGGTGGTGGTGGTGGTGGTGATGGTGGTGGTGGTGGTGGTGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGTGGTGGTGGTGGTGGTGGTGATGGTGGTGGTGGTGGTGGTGGTG  382

seq1  AACAGGCTGGCAGTGAGAAGCCTCTTTACCCATTATTCTGGCCCATTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGCTGGCAGTGAGAAGCCTCTTTACCCATTATTCTGGCCCATTTGG  432

seq1  AAGAAATCAATATCACTAGTATCCCCCTCATATATTCTGACAGATAGGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATCAATATCACTAGTATCCCCCTCATATATTCTGACAGATAGGTA  482

seq1  CACTTACCAATGCACTAAAAAAAAAAAAAAAAAAAAACCCATAAGTATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTACCAATGCACTAAAAAAAAAAAAAAAAAAAAACCCATAAGTATAG  532

seq1  CTGATTGTGGTGGCACACACCTAATCCCAGAGCTCAGGAGGCAGAGGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTGTGGTGGCACACACCTAATCCCAGAGCTCAGGAGGCAGAGGCAG  582

seq1  GCAGATCTGCAGAGCAAGCTCCGAACCACTTGTCTTGGTGAAGAAATATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATCTGCAGAGCAAGCTCCGAACCACTTGTCTTGGTGAAGAAATATC  632

seq1  TGGAGACAATTTGCCCTGGGAGAATGGGGCCAATCAGTGAGGCAGAGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGACAATTTGCCCTGGGAGAATGGGGCCAATCAGTGAGGCAGAGTAA  682

seq1  AGTCTCCTGTAGTAGCCATCTTTGTTCAGAGCCTCAGGCGATTCATATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCCTGTAGTAGCCATCTTTGTTCAGAGCCTCAGGCGATTCATATTC  732

seq1  TAGGGGCTAAGAGTCACAGGAATAAAATGTCCAATCACAAGGACAAACCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGCTAAGAGTCACAGGAATAAAATGTCCAATCACAAGGACAAACCG  782

seq1  CATTTGGCGGGCAAGCCACACACGTGGTCAAAACATGTTTTTCCATAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGGCGGGCAAGCCACACACGTGGTCAAAACATGTTTTTCCATAGAG  832

seq1  GCATAGAAAAGAATATGAGTAGCCAGTTGTAATAATCTGAAGTGAACTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGAAAAGAATATGAGTAGCCAGTTGTAATAATCTGAAGTGAACTCA  882

seq1  CTTCAATCCACTGCATCTGGGAGAGGCACGCAAGCGTAATCCAGGAACAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAATCCACTGCATCTGGGAGAGGCACGCAAGCGTAATCCAGGAACAA  932

seq1  TTCCGTGTTTTGTTTTGTTTTGTTTTAAAAGAAACTGCTATCACAAGACT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGTGTTTTGTTTTGTTTTGTTTTAAAAGAAACTGCTATCACAAGACT  982

seq1  CTTGGTTTCTTAGAGTTCTCTCACAAGCAATCAGAATTC  1039
      |||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTTTCTTAGAGTTCTCTCACAAGCAATCAGAATTC  1021