BAC Information

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BAC

Clone NameB6Ng01-072L08
Chromosome7 (Build37)
Map Location 109,566,331 - 109,694,517
singlet/doubletdoublet
Overlap geneStim1, Rrm1, Olfr543, Olfr544, Olfr545, LOC667284, Olfr547, Olfr548-ps1
Upstream genePde2a, Art2a, EG630138, Art2b, Clpb, Phox2a, Inppl1, Folr2, Folr1, 3200002M19Rik, F930017I19Rik, 2400001E08Rik, Lrrc51, LOC667222, Numa1, Il18bp, Rnf121, Trpc2, Art5, Art1, Chrna10, Nup98, Frag1, Rhog
Downstream geneOlfr549, Trim21, LOC384699, Olfr550, Olfr551, Olfr552, Olfr553, Olfr554, LOC100040840, Olfr555, Olfr556, Trim68, Olfr557, Olfr558, Olfr33, Olfr559, Olfr78, Olfr560, Olfr561, Olfr562-ps1, Olfr563-ps1, Olfr564, Olfr565-ps1, Olfr566, GA_x5J8B7W5P47-379997-380552, Olfr567-ps1, Olfr568, Olfr569, Olfr570, Olfr571, Olfr572, Olfr573-ps1, Olfr574, Olfr575, Olfr576, Olfr577, Olfr578, Olfr1527-ps1, Olfr579-ps1, Olfr580-ps1, Olfr581-ps1, Olfr582, Olfr583, Olfr584, Olfr585, Olfr586, Olfr587-ps1, Olfr588-ps1, Olfr589, Olfr590-ps1, Olfr591, Olfr592, Olfr593, Olfr594, Olfr595-ps1, Usp17, Dub2a, LOC100041187, Olfr597, GA_x5J8B7TU1BB-380-666, Olfr598, Olfr599, Olfr600, Olfr601, Olfr602-ps1, Olfr604, Olfr596-ps1, Dub2, Olfr605, Olfr606, EG546989, Olfr608, Olfr609, Olfr610, Olfr611, EG545985
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072L08.bB6Ng01-072L08.g
ACCDH890048DH890049
length1,1281,166
definitionDH890048|Mus musculus domesticus DNA, BAC clone: B6Ng01-072L08, 5' end.DH890049|Mus musculus domesticus DNA, BAC clone: B6Ng01-072L08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,566,331 - 109,567,468)(109,693,333 - 109,694,517)
sequence
gaattcatcttcctgcctctaccttctgagtgttgggtttattcatcacc
agatattcatcgcctgatattttctttttaactaaatagacagtatcccc
aagggggcttttaattctattgtctatattttctctttctttttactact
tttggtgatgatagtgatgtctcactggctagcctggatcttggatatag
accaggttcgtcttgaacttcattgatcttcatgtctctacctcttaagt
gactacaagcacatgccaccacatctggcctttctctacctcaattctaa
acactatctctcttttcttttcctttctttctttcttttaaatggtgttt
cattgtatagccctagctggtctggaactcacagagatttacctacctct
actccagaatgctggaattaaaggtgtacgccaccatgcccagctttttt
cttttaaaaatattttattacatacatttatctctctctctctctgtgtg
tgcacgtgctggaggaagtgaatataaaccatggtgtgggtatacaggtc
agaagataacataccagagtctgttctctcattctaccatatgcggcctt
gatatcattcagttatgcttggtagcaaatacctttaccactgagctacc
ttactggcctcttccttccttcttccttttctttttcctttcacatcccc
cttccatcctcgtctctgactttccaccctctcctttctcaccttcccct
catttggaccaaacccagtacctcactcaggctaatccagcattctaaat
ctcttctcctttccattatccccatgtcctagttcctgataacttgatgg
ttcctattaacttaagagacagggccaagggctggtgagatgactcaagg
gtaagagcactgactgctcttcaaaggtcctgagttcaaatcccagcaac
cacatggtggctcacaaacatctgtacaaaatctgatgcctcttctggtg
tgtctgaagacagcttacagtgtacacacatatgataaaaaaaaattctt
aaaaaaaaaaaaagacagccacagcctgagttcttcctatctcagggcaa
tagtaaatcttatctttgggtcttgtct
gaattcatagcagcaccccttcaaccccaatgtttttctgtgaagataaa
ttaaattttatcaaattttaagttcaatcgttgaataaagaataagatgt
tttagtggaccagtttattagacagaggtaaagatcattagtaaaaatca
accacaagttaggaaaatatttccccatgtgattttttttaaaaaatcac
aaaaataataaagagccttggaggttaggggcagaagacagagatgtaaa
ataagaaacatccaagttagtggaatcagcccagttgtccatcaacatat
gatgaataaagaaaaatgtggtgtatttatacacacatcatttcattcaa
ccataaaaggattaaatcacagagaaatgaatacaactggagaccattat
attgggcaaagtaagtcagattcaaaaagacaaacatctctttttctctc
tcatctgtgaatcctagattttagatgtataaaatcacatgtatgtgaca
tatataactatgcatgtatatgacatgaaagtcagtaagaacaggtaaat
gtatgactggtgggaagggcaaaaagaaggaatctgaggggatggggtaa
acagagtgaaagtacctgacatacatgaaggaagatgtctgtggaaccta
ccactgtgttcaatgaatacacgacaacagatccatgtataacaaactca
aaagaagctattttgatgaagttaatacagacaactcaactgtgagaaat
cttacccttctctcatccatgaccaaaaataaaaaagtgtatttttatag
gtttagtctgcctgttcctgaactcaccctatgagatatgaagaaatggc
actgttcttcatatataacaagtatcatactacatgatattacagggagg
aagcttgcatcccatgcccagaaagatgcaactgtataaggactaaataa
gcagagagacacactcagcttaccgattatgcatcggtttcttgttacct
aaaggtttatttgctaatgtctatttttgaaaactagatctaaaagcaaa
tgatcaaaatcagaagaatttctgagtgaataataacaaattagattgag
aaaatattcttaagtaatgcattaaagtcagctgacgatatgatgattgc
ttagaggttggaagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_109566331_109567468
seq2: B6Ng01-072L08.b_46_1173

seq1  GAATTCATCTTCCTGCCTCTACCTTCTGAGTGTTGGGTTTATTCATCACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTTCCTGCCTCTACCTTCTGAGTGTTGGGTTTATTCATCACC  50

seq1  AGATATTCATCGCCTGATATTTTCTTTTTAACTAAATAGACAGTATCCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTCATCGCCTGATATTTTCTTTTTAACTAAATAGACAGTATCCCC  100

seq1  AAGGGGGCTTTTAATTCTATTGTCTATATTTTCTCTTTCTTTTTACTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGGCTTTTAATTCTATTGTCTATATTTTCTCTTTCTTTTTACTACT  150

seq1  TTTGGTGATGATAGTGATGTCTCACTGGCTAGCCTGGATCTTGGATATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTGATGATAGTGATGTCTCACTGGCTAGCCTGGATCTTGGATATAG  200

seq1  ACCAGGTTCGTCTTGAACTTCATTGATCTTCATGTCTCTACCTCTTAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGTTCGTCTTGAACTTCATTGATCTTCATGTCTCTACCTCTTAAGT  250

seq1  GACTACAAGCACATGCCACCACATCTGGCCTTTCTCTACCTCAATTCTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACAAGCACATGCCACCACATCTGGCCTTTCTCTACCTCAATTCTAA  300

seq1  ACACTATCTCTCTTTTCTTTTCCTTTCTTTCTTTCTTTTAAATGGTGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTATCTCTCTTTTCTTTTCCTTTCTTTCTTTCTTTTAAATGGTGTTT  350

seq1  CATTGTATAGCCCTAGCTGGTCTGGAACTCACAGAGATTTACCTACCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTATAGCCCTAGCTGGTCTGGAACTCACAGAGATTTACCTACCTCT  400

seq1  ACTCCAGAATGCTGGAATTAAAGGTGTACGCCACCATGCCCAGCTTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAGAATGCTGGAATTAAAGGTGTACGCCACCATGCCCAGCTTTTTT  450

seq1  CTTTTAAAAATATTTTATTACATACATTTATCTCTCTCTCTCTCTGTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAAAAATATTTTATTACATACATTTATCTCTCTCTCTCTCTGTGTG  500

seq1  TGCACGTGCTGGAGGAAGTGAATATAAACCATGGTGTGGGTATACAGGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACGTGCTGGAGGAAGTGAATATAAACCATGGTGTGGGTATACAGGTC  550

seq1  AGAAGATAACATACCAGAGTCTGTTCTCTCATTCTACCATATGCGGCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATAACATACCAGAGTCTGTTCTCTCATTCTACCATATGCGGCCTT  600

seq1  GATATCATTCAGTTATGCTTGGTAGCAAATACCTTTACCACTGAGCTACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCATTCAGTTATGCTTGGTAGCAAATACCTTTACCACTGAGCTACC  650

seq1  TTACTGGCCTCTTCCTTCCTTCTTCCTTTTCTTTTTCCTTTCACATCCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGGCCTCTTCCTTCCTTCTTCCTTTTCTTTTTCCTTTCACATCCCC  700

seq1  CTTCCATCCTCGTCTCTGACTTTCCACCCTCTCCTTTCTCACCTTCCCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCATCCTCGTCTCTGACTTTCCACCCTCTCCTTTCTCACCTTCCCCT  750

seq1  CATTTGGACCAAACCCAGTACCTCACTCAGGCTAATCCAGCATTCTAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGGACCAAACCCAGTACCTCACTCAGGCTAATCCAGCATTCTAAAT  800

seq1  CTCTTCTCCTTTCCATTATCCCCATGTCCTAGTTCCTGATAACTTGATGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTCCTTTCCATTATCCCCATGTCCTAGTTCCTGATAACTTGATGG  850

seq1  TTCCTATTAACTTAAGAAGACCAGG-CAAGGGCTGGTGAGATGACTCAGG  899
      |||||||||||||||| ||||  || |||||||||||||||||||||| |
seq2  TTCCTATTAACTTAAG-AGACAGGGCCAAGGGCTGGTGAGATGACTCAAG  899

seq1  GGTTAAGAGCACTGACTGCTCTTCCAAAGGTCCTGAGTTCAAATCCCAGC  949
      || |||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GG-TAAGAGCACTGACTGCTCTT-CAAAGGTCCTGAGTTCAAATCCCAGC  947

seq1  AACCACATGGTGGCTCACAAACATCTGTAACAAAAATCTGATGCCCTCTT  999
      |||||||||||||||||||||||||||||   ||||||||||| ||||||
seq2  AACCACATGGTGGCTCACAAACATCTGTA--CAAAATCTGATG-CCTCTT  994

seq1  CTGGTGTGTCTGAAGACAGC-TACAGTGTACACACATATGATTAAAAAAA  1048
      |||||||||||||||||||| ||||||||||||||||||||| |||||||
seq2  CTGGTGTGTCTGAAGACAGCTTACAGTGTACACACATATGATAAAAAAAA  1044

seq1  AATCTTAAAAAAAAAAAAAAAGACCAGGCAACAG-CTTAGTTCTTTCCCA  1097
      | ||||||||||||||||| | |    || |||| || ||||| |||| |
seq2  ATTCTTAAAAAAAAAAAAAGACA----GCCACAGCCTGAGTTC-TTCCTA  1089

seq1  TCTCAGGGCAATTAGTAAACTCTTTCCCTTGGGTCTTGTCT  1138
      ||||||||||| ||||||| ||||  | |||||||||||||
seq2  TCTCAGGGCAA-TAGTAAA-TCTTATCTTTGGGTCTTGTCT  1128

seq1: chr7_109693333_109694517
seq2: B6Ng01-072L08.g_65_1230 (reverse)

seq1  TCCTTCACAACCTCT-AGCAATCATCATATCCCTTCAGGCTGACTTTTAA  49
      |||||| |||||||| ||||||||||||||  | ||| |||||||||  |
seq2  TCCTTC-CAACCTCTAAGCAATCATCATAT--CGTCA-GCTGACTTT--A  44

seq1  ATTCCCATGTAACTTTAGGATATTTTCTTCAATCTAAAATTTTGTTATTA  99
      || |     | |||| || |||||||| |||||||||   ||||||||||
seq2  ATGC----ATTACTTAAGAATATTTTC-TCAATCTAA---TTTGTTATTA  86

seq1  TTCACTCAGATATTCTTCTTGATTTTGATCATTTGCTTTTTAGATCTAGT  149
      |||||||||| ||||||| ||||||||||||||||| |||||||||||| 
seq2  TTCACTCAGAAATTCTTC-TGATTTTGATCATTTGC-TTTTAGATCTAG-  133

seq1  TTTTCAAAAATAGACATTAGCAAATAAACC-TTAGGTAAACAAAGAAAAC  198
      |||||||||||||||||||||||||||||| |||||| |||||   ||||
seq2  TTTTCAAAAATAGACATTAGCAAATAAACCTTTAGGT-AACAA--GAAAC  180

seq1  CGATGCATAATCGGTAAGCTGAGTGTGTCTCTCTGCTTATTTAGTCCCTT  248
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CGATGCATAATCGGTAAGCTGAGTGTGTCTCTCTGCTTATTTAGT-CCTT  229

seq1  ATACAGTTGCATCTTTCTGGGCATGGGATGCAAGCTTCCTCCCTGTAATA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGTTGCATCTTTCTGGGCATGGGATGCAAGCTTCCTCCCTGTAATA  279

seq1  TCATGTAGTATGATACTTGTTATATATGAAGAACAGTGCCATTTCTTCAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTAGTATGATACTTGTTATATATGAAGAACAGTGCCATTTCTTCAT  329

seq1  ATCTCATAGGGTGAGTTCAGGAACAGGCAGACTAAACCTATAAAAATACA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCATAGGGTGAGTTCAGGAACAGGCAGACTAAACCTATAAAAATACA  379

seq1  CTTTTTTATTTTTGGTCATGGATGAGAGAAGGGTAAGATTTCTCACAGTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTATTTTTGGTCATGGATGAGAGAAGGGTAAGATTTCTCACAGTT  429

seq1  GAGTTGTCTGTATTAACTTCATCAAAATAGCTTCTTTTGAGTTTGTTATA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGTCTGTATTAACTTCATCAAAATAGCTTCTTTTGAGTTTGTTATA  479

seq1  CATGGATCTGTTGTCGTGTATTCATTGAACACAGTGGTAGGTTCCACAGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGATCTGTTGTCGTGTATTCATTGAACACAGTGGTAGGTTCCACAGA  529

seq1  CATCTTCCTTCATGTATGTCAGGTACTTTCACTCTGTTTACCCCATCCCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTCCTTCATGTATGTCAGGTACTTTCACTCTGTTTACCCCATCCCC  579

seq1  TCAGATTCCTTCTTTTTGCCCTTCCCACCAGTCATACATTTACCTGTTCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATTCCTTCTTTTTGCCCTTCCCACCAGTCATACATTTACCTGTTCT  629

seq1  TACTGACTTTCATGTCATATACATGCATAGTTATATATGTCACATACATG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGACTTTCATGTCATATACATGCATAGTTATATATGTCACATACATG  679

seq1  TGATTTTATACATCTAAAATCTAGGATTCACAGATGAGAGAGAAAAAGAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTATACATCTAAAATCTAGGATTCACAGATGAGAGAGAAAAAGAG  729

seq1  ATGTTTGTCTTTTTGAATCTGACTTACTTTGCCCAATATAATGGTCTCCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTGTCTTTTTGAATCTGACTTACTTTGCCCAATATAATGGTCTCCA  779

seq1  GTTGTATTCATTTCTCTGTGATTTAATCCTTTTATGGTTGAATGAAATGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTATTCATTTCTCTGTGATTTAATCCTTTTATGGTTGAATGAAATGA  829

seq1  TGTGTGTATAAATACACCACATTTTTCTTTATTCATCATATGTTGATGGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTATAAATACACCACATTTTTCTTTATTCATCATATGTTGATGGA  879

seq1  CAACTGGGCTGATTCCACTAACTTGGATGTTTCTTATTTTACATCTCTGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGGGCTGATTCCACTAACTTGGATGTTTCTTATTTTACATCTCTGT  929

seq1  CTTCTGCCCCTAACCTCCAAGGCTCTTTATTATTTTTGTGATTTTTTAAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCCCCTAACCTCCAAGGCTCTTTATTATTTTTGTGATTTTTTAAA  979

seq1  AAAAATCACATGGGGAAATATTTTCCTAACTTGTGGTTGATTTTTACTAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCACATGGGGAAATATTTTCCTAACTTGTGGTTGATTTTTACTAA  1029

seq1  TGATCTTTACCTCTGTCTAATAAACTGGTCCACTAAAACATCTTATTCTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTTTACCTCTGTCTAATAAACTGGTCCACTAAAACATCTTATTCTT  1079

seq1  TATTCAACGATTGAACTTAAAATTTGATAAAATTTAATTTATCTTCACAG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAACGATTGAACTTAAAATTTGATAAAATTTAATTTATCTTCACAG  1129

seq1  AAAAACATTGGGGTTGAAGGGGTGCTGCTATGAATTC  1185
      |||||||||||||||||||||||||||||||||||||
seq2  AAAAACATTGGGGTTGAAGGGGTGCTGCTATGAATTC  1166