BAC Information

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BAC

Clone NameB6Ng01-073D08
Chromosome7 (Build37)
Map Location 20,095,500 - 20,299,403
singlet/doubletdoublet
Overlap geneTrappc6a, Nkpd1, BC024868, Gemin7, Zfp296, Sfrs16, Relb, Clptm1, Apoc2, Apoc4, Apoc1, Apoe, Tomm40
Upstream geneEG232930, Psg25, EG545925, Psg23, Psg21, EG434540, BC050099, LOC666863, Sycp1-ps1, Psg19, Psg17, Mill2, Pglyrp1, C530028I08Rik, Nova2, Nanos2, P42pop, Irf2bp1, Foxa3, Sympk, Rshl1, Dmwd, Dmpk, Six5, EG243866, Fbxo46, Qpctl, Snrpd2, Gipr, Eml2, Gpr4, Opa3, Vasp, C79127, Rtn2, Fosb, D830036C21Rik, Ercc1, Cd3eap, Ppp1r13l, Ercc2, Klc3, Ckm, Mark4, 4933417E01Rik, Bloc1s3
Downstream genePvrl2, Bcam, Cblc, Bcl3, Ceacam16, Ceacam19, Pvr, 2210010C17Rik, EG243872, Ceacam20, Nlrp9b, EG667040, EG667067, LOC620401, V1rd21, EG620537, LOC100043519, EG620574, LOC100043523, EG545926, LOC100043528, LOC100042964, LOC100042966, LOC100043533, EG435949, LOC100043536, LOC100042968, LOC100042971, EG667129, EG667135, EG435946, LOC100042976, LOC100043550, LOC667156, LOC673977, LOC667166, LOC100042980
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-073D08.bB6Ng01-073D08.g
ACCDH890406DH890407
length969768
definitionDH890406|Mus musculus domesticus DNA, BAC clone: B6Ng01-073D08, 5' end.DH890407|Mus musculus domesticus DNA, BAC clone: B6Ng01-073D08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,095,500 - 20,096,471)(20,298,637 - 20,299,403)
sequence
gaattccaggacagccagggctatacagagaaaccgtgtcttaaaaaaaa
aaaaaaaaaaaaacaacaaaggatatctcatctcacttatatactgttcc
actctcacacatgcgatcctgctgcctgcacttcccaagggctggaattg
gatgcagagatgtcgttttagttaatttagttaattaatacgtctctagt
gattatttacaaactttaaaatttttttctaaacagtatggtataactat
atagtaattacattgtattagcattataatcatctagaaaggatttatag
tctataagaaagctagggtttggctcagcagtgcagctcctgcctagaat
cccccagtgaggggctggggttgtagttcagtggtagagcccctgcctag
aatccttcagtgaggagttgtgggtgtggctcagcaaaatagcacctgct
tagaatggcacagggatgagctaggttttatccttaacacaacaaaataa
agcaagatctgtgggagaatgtgtgtgggctattatgtaaacacttcatt
tcataaaaggacttttgcaattttacctgtagaggtcaagtgctcaggtc
tttagaacaacacctgaggcaaatgacttgtcttggattttcaggactgg
ggttttggaatcttcacaggccccggggagaatcaaaaaaatatactcag
cccctcgcctccagaattcgtccctgggtagaggcctgcctgacccaact
gatcgttgctttttttttttttttttcttttcaagacagggcttctcttg
tgtagccctggctgtcctggaactcactctgtagaccaggctggcctaga
actcagaaatccgcctgcctctgcctcctgagtgctaagattaaggcgtg
cgcaatcactgcctggctctgatctttgctttttattgttgtaacatgtc
ccagcacagatcactttct
gaattccagggtgactacttggggcctgggggagttagggtttaggaatc
cataattcttaccctacaaagtcaagtaggagtggaaacggtgagtgtgg
cgcccaccccagcaccactttctcactagaaacctttaatctcgtcaggt
caggcctggtgttttgttggatccctgggcattgatgctgctagtcgtgg
cctgacacccggtgttcactccccatctccacatctctagtttgcatccc
ccagctatcgccaagacccccaccacctactcttttctcccaggtgaccc
acacagtagccctcggcacaattggggagtccaactaccactttggggtc
acatacgtggggacgaagcagctgagtcccacagaggtaagatttcttca
gtcattctaacatctgttaaggaaatccagtggccaggtgacagactcaa
gggggctatgaagggaaggaggtgagcaagtgagcagccaaggtgttggg
acatgggtgattccttcctgcagtaatatccctaacatactgttctttat
ctcatcctgggggtgaggggctgggtttggggacaacttagtgatgacct
ggatgcttgaaccagatagagcacctggaatgtcaagattttttcttggg
tgttctctagggggtgctagagagccacagaaatttggcgagggagatgg
gtcagatgggtgcttcaggtatgttcctcggtgatggagagaaggggtgt
ggagctggtgggatcggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_20095500_20096471
seq2: B6Ng01-073D08.b_42_1010

seq1  GAATTCCAGGACAGCCAGGGCTATACAGAGAAACCGTGTCTTAAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGGGCTATACAGAGAAACCGTGTCTTAAAAAAAA  50

seq1  AAAAAAAAAAAAACAACAAAGGATATCTCATCTCACTTATATACTGTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAACAACAAAGGATATCTCATCTCACTTATATACTGTTCC  100

seq1  ACTCTCACACATGCGATCCTGCTGCCTGCACTTCCCAAGGGCTGGAATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCACACATGCGATCCTGCTGCCTGCACTTCCCAAGGGCTGGAATTG  150

seq1  GATGCAGAGATGTCGTTTTAGTTAATTTAGTTAATTAATACGTCTCTAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAGAGATGTCGTTTTAGTTAATTTAGTTAATTAATACGTCTCTAGT  200

seq1  GATTATTTACAAACTTTAAAATTTTTTTCTAAACAGTATGGTATAACTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATTTACAAACTTTAAAATTTTTTTCTAAACAGTATGGTATAACTAT  250

seq1  ATAGTAATTACATTGTATTAGCATTATAATCATCTAGAAAGGATTTATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAATTACATTGTATTAGCATTATAATCATCTAGAAAGGATTTATAG  300

seq1  TCTATAAGAAAGCTAGGGTTTGGCTCAGCAGTGCAGCTCCTGCCTAGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAAGAAAGCTAGGGTTTGGCTCAGCAGTGCAGCTCCTGCCTAGAAT  350

seq1  CCCCCAGTGAGGGGCTGGGGTTGTAGTTCAGTGGTAGAGCCCCTGCCTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAGTGAGGGGCTGGGGTTGTAGTTCAGTGGTAGAGCCCCTGCCTAG  400

seq1  AATCCTTCAGTGAGGAGTTGTGGGTGTGGCTCAGCAAAATAGCACCTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTTCAGTGAGGAGTTGTGGGTGTGGCTCAGCAAAATAGCACCTGCT  450

seq1  TAGAATGGCACAGGGATGAGCTAGGTTTTATCCTTAACACAACAAAATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATGGCACAGGGATGAGCTAGGTTTTATCCTTAACACAACAAAATAA  500

seq1  AGCAAGATCTGTGGGAGAATGTGTGTGGGCTATTATGTAAACACTTCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGATCTGTGGGAGAATGTGTGTGGGCTATTATGTAAACACTTCATT  550

seq1  TCATAAAAGGACTTTTGCAATTTTACCTGTAGAGGTCAAGTGCTCAGGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAAAGGACTTTTGCAATTTTACCTGTAGAGGTCAAGTGCTCAGGTC  600

seq1  TTTAGAACAACACCTGAGGCAAATGACTTGTCTTGGATTTTCAGGACTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAACAACACCTGAGGCAAATGACTTGTCTTGGATTTTCAGGACTGG  650

seq1  GGTTTTGGAATCTTCACAGGCCCCGGGGAGAATCAAAAAAATATACTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTGGAATCTTCACAGGCCCCGGGGAGAATCAAAAAAATATACTCAG  700

seq1  CCCCTCGCCTCCAGAATTCGTCCCTGGGTAGAGGCCTGCCTGACCCAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCGCCTCCAGAATTCGTCCCTGGGTAGAGGCCTGCCTGACCCAACT  750

seq1  GATCGTTGCTTTTTTTTTTTTTTTTTCTTTTCGAGACAGGGCTTCTCTTG  800
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GATCGTTGCTTTTTTTTTTTTTTTTTCTTTTCAAGACAGGGCTTCTCTTG  800

seq1  TGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTAGA  850

seq1  ACTCAGAAATCCGCCTGCCTCTGCCTCCTGAGTGCTAGGATTAAAGGCGT  900
      ||||||||||||||||||||||||||||||||||||| |||| |||||||
seq2  ACTCAGAAATCCGCCTGCCTCTGCCTCCTGAGTGCTAAGATT-AAGGCGT  899

seq1  GCGCCAACACTGCCTGGCCCTGATCTTTGCTTTTTATTGTATGTCACATG  950
      |||| | ||||||||||| ||||||||||||||||||||| ||| |||||
seq2  GCGCAATCACTGCCTGGCTCTGATCTTTGCTTTTTATTGT-TGTAACATG  948

seq1  TCCCAGCACAGATCACATTTCT  972
      |||||||||||||||| |||||
seq2  TCCCAGCACAGATCAC-TTTCT  969

seq1: chr7_20298637_20299403
seq2: B6Ng01-073D08.g_71_838 (reverse)

seq1  CCCGCTCCCACCAGCTCCACACCCCTTCTCTCCATC-CCGAGGAACATAC  49
      |||| ||||||||||||||||||||||||||||||| |||||||||||||
seq2  CCCGATCCCACCAGCTCCACACCCCTTCTCTCCATCACCGAGGAACATAC  50

seq1  CTGAAGCACCCATCTGACCCATCTCCCTCGCCAAATTTCTGTGGCTCTCT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGCACCCATCTGACCCATCTCCCTCGCCAAATTTCTGTGGCTCTCT  100

seq1  AGCACCCCCTAGAGAACACCCAAGAAAAAATCTTGACATTCCAGGTGCTC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCCCCTAGAGAACACCCAAGAAAAAATCTTGACATTCCAGGTGCTC  150

seq1  TATCTGGTTCAAGCATCCAGGTCATCACTAAGTTGTCCCCAAACCCAGCC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGGTTCAAGCATCCAGGTCATCACTAAGTTGTCCCCAAACCCAGCC  200

seq1  CCTCACCCCCAGGATGAGATAAAGAACAGTATGTTAGGGATATTACTGCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACCCCCAGGATGAGATAAAGAACAGTATGTTAGGGATATTACTGCA  250

seq1  GGAAGGAATCACCCATGTCCCAACACCTTGGCTGCTCACTTGCTCACCTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAATCACCCATGTCCCAACACCTTGGCTGCTCACTTGCTCACCTC  300

seq1  CTTCCCTTCATAGCCCCCTTGAGTCTGTCACCTGGCCACTGGATTTCCTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTTCATAGCCCCCTTGAGTCTGTCACCTGGCCACTGGATTTCCTT  350

seq1  AACAGATGTTAGAATGACTGAAGAAATCTTACCTCTGTGGGACTCAGCTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGATGTTAGAATGACTGAAGAAATCTTACCTCTGTGGGACTCAGCTG  400

seq1  CTTCGTCCCCACGTATGTGACCCCAAAGTGGTAGTTGGACTCCCCAATTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGTCCCCACGTATGTGACCCCAAAGTGGTAGTTGGACTCCCCAATTG  450

seq1  TGCCGAGGGCTACTGTGTGGGTCACCTGGGAGAAAAGAGTAGGTGGTGGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGAGGGCTACTGTGTGGGTCACCTGGGAGAAAAGAGTAGGTGGTGGG  500

seq1  GGTCTTGGCGATAGCTGGGGGATGCAAACTAGAGATGTGGAGATGGGGAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTGGCGATAGCTGGGGGATGCAAACTAGAGATGTGGAGATGGGGAG  550

seq1  TGAACACCGGGTGTCAGGCCACGACTAGCAGCATCAATGCCCAGGGATCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACACCGGGTGTCAGGCCACGACTAGCAGCATCAATGCCCAGGGATCC  600

seq1  AACAAAACACCAGGCCTGACCTGACGAGATTAAAGGTTTCTAGTGAGAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACACCAGGCCTGACCTGACGAGATTAAAGGTTTCTAGTGAGAAA  650

seq1  GTGGTGCTGGGGTGGGCGCCACACTCACCGTTTCCACTCCTACTTGACTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGCTGGGGTGGGCGCCACACTCACCGTTTCCACTCCTACTTGACTT  700

seq1  TGTAGGGTAAGAATTATGGATTCCTAAACCCTAACTCCCCCAGGCCCCAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGGTAAGAATTATGGATTCCTAAACCCTAACTCCCCCAGGCCCCAA  750

seq1  GTAGTCACCCTGGAATTC  767
      ||||||||||||||||||
seq2  GTAGTCACCCTGGAATTC  768