BAC Information

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BAC

Clone NameB6Ng01-074H01
Chromosome17 (Build37)7 (Build37)
Map Location 5,851,146 - 5,851,56784,339,573 - 84,339,822
singlet/doubletsingletsinglet
Overlap geneSnx9
Upstream genePpia-ps17_26.1, Arid1b, 5730437N04Rik, Ldhal6b, LOC100040282, LOC666919, LOC100040312, Zdhhc14, 3300005D01Rik, LOC100040342, LOC100040352
Downstream geneLOC666951, Synj2, Serac1, Gtf2h5, 2210038L17Rik, LOC545184, Tulp4, EG433058, Tmem181, LOC100040453, LOC100040471, Dynlt1, LOC547127, LOC100040488, LOC100040500, LOC100040531, LOC100040525, LOC100040563, LOC100040546, LOC100040536, LOC100040556, LOC100040603, LOC100040596
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-074H01.bB6Ng01-074H01.g
ACCDH891289DH891290
length771399
definitionDH891289|Mus musculus domesticus DNA, BAC clone: B6Ng01-074H01, 5' end.DH891290|Mus musculus domesticus DNA, BAC clone: B6Ng01-074H01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(5,851,146 - 5,851,567)(84,339,573 - 84,339,822)
sequence
gaattccatgtagagacagtgagtgggcaggaggtatgggacgtggagca
gtaggagggtggacaaggggcagggaataaaatgtgaagtgtaaaataaa
taaataaataaataaataaattcaaaaatggagagagagaaaaaaaagag
agaatcttgggcatagaagataccataaaagatattgactcaacagttga
agacaatacaaagtgcaaaaagctcctaacccaaaacatataggaaattt
cttttccttttccatttcctttcatggatgcctctttcttccttctcctt
tctctttcttccatctgttcttcctgagacctcttcactcaatcctcaag
tcatgcatctcttcctactgcccagtcacagactttaaatctcttaataa
tgaatcaattttaaattggggagcagggattacatcacatcactgggtgt
gagtgggaatctccttgttggggtcaaccagctcttgggggccagtatta
agcatttgaatacatagatgcaccagaccaacagccaacagcctgaacca
gatcttatcctagagataaaaggagaagtgaatgcatacttctatcctta
gcccagaagcagtcttcaattgataaccacttgccaattaaaatatagtt
tcctctaagggagcctaactgggaaaacaaagtattcttaagggtaggct
gcatgaccagcaatagatggccagaggaatatctctctctctctctctct
ctctctctctctctctctctc
gaattccagaccttcatgcaaaaatgtagcaattacaaataattccttca
ctgtaattaagggtacttaaccaaggctacctctggctttgggaagcatt
ctgtggttagataagatgttggtttaagaaaagggtggattctttctcta
gctcctccattgggggccctgtgatccatccaatagctgactgtgagcat
tcacttctgtgtttgctaggccccggcatagtctcacaagagacagctat
atcagggtcctttcagcaaaatcttgctagtgtatgcaatggtgtcagta
tttggaggctgattatgggatggatccctggatatggcagtctctagatg
gtccatccttttgtctcagctccaaactttgtctctgtaactccttcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_5851146_5851567
seq2: B6Ng01-074H01.b_774_814 (reverse)

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||          
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAT---------  41

seq1  TGGCAGTGTGAGTGCCTGAGAGAGATGGCAGAGTGTGTGTGTGTGTGTGT  100
                                                        
seq2  --------------------------------------------------  41

seq1  GTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGA  150
                                                        
seq2  --------------------------------------------------  41

seq1  GAGAGAGAGAAAGAGATGGCAGTGTACGTGTGTGAGAGAGATGGCAGTGT  200
                                                        
seq2  --------------------------------------------------  41

seq1  GTGTGCCTGAGAGAGATGGCAGAGTGTGTGTGTGAGAGAGATGGCAGTAT  250
                                                        
seq2  --------------------------------------------------  41

seq1  GTGTGTGAGAGAGATGGTTGTGTGTGTGTGAGAGAGATGGTTGTGTGTAT  300
                                                        
seq2  --------------------------------------------------  41

seq1  ATGAGAGAGATGGCAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAG  350
                                                        
seq2  --------------------------------------------------  41

seq1  AGAGAGAGAGGGCAGTGTATGTGTGTGAGAGAGATGGCAGAGTGTGTGTG  400
                                                        
seq2  --------------------------------------------------  41

seq1  TGTGTGAGAGAGAGAGAGAGAT  422
                            
seq2  ----------------------  41

seq1: chr7_84339573_84339822
seq2: B6Ng01-074H01.g_216_465 (reverse)

seq1  TGGAAGGAGTTACAGAGACAGAGTTTGGAGCTGAGATGAAAGGGTGGACC  50
      |||||||||||||||||||| |||||||||||||||  ||||| ||||||
seq2  TGGAAGGAGTTACAGAGACAAAGTTTGGAGCTGAGACAAAAGGATGGACC  50

seq1  ATCTAGAGACTGCCATACCCGGGGATCCATCCCATAATCAGCCTCCAAAC  100
      ||||||||||||||||| || |||||||||||||||||||||||||||| 
seq2  ATCTAGAGACTGCCATATCCAGGGATCCATCCCATAATCAGCCTCCAAAT  100

seq1  GCTGACACCATTGCATACACTAGCAAGATTTTGCTGAAAGGACCCTGATA  150
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACACCATTGCATACACTAGCAAGATTTTGCTGAAAGGACCCTGATA  150

seq1  TAGCTGTCTCTTTTGAGACTATGCTGGGGCCTAGCAAACACAGAAGTGGA  200
      |||||||||||| ||||||||||| ||||||||||||||||||||||| |
seq2  TAGCTGTCTCTTGTGAGACTATGCCGGGGCCTAGCAAACACAGAAGTGAA  200

seq1  TGCTCACGGTCAGCTATTGGATGGATCACAGGGCCCCTAATGGAGGAGCT  250
      ||||||| ||||||||||||||||||||||||||||| ||||||||||||
seq2  TGCTCACAGTCAGCTATTGGATGGATCACAGGGCCCCCAATGGAGGAGCT  250