BAC Information

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BAC

Clone NameB6Ng01-075H11
Chromosome7 (Build37)17 (Build37)
Map Location 124,084,129 - 124,085,19842,053,688 - 42,054,246
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSox6, 1110006G14Rik, EG668479, LOC100043313, 1110004F10Rik, Plekha7, Rps13, Pik3c2a, LOC100042798, Nucb2, LOC100043320, EG668484, LOC668485, LOC546993, LOC100043330
Downstream geneXylt1, LOC669758
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-075H11.bB6Ng01-075H11.g
ACCDH892019DH892020
length1,081978
definitionDH892019|Mus musculus domesticus DNA, BAC clone: B6Ng01-075H11, 5' end.DH892020|Mus musculus domesticus DNA, BAC clone: B6Ng01-075H11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(124,084,129 - 124,085,198)(42,053,688 - 42,054,246)
sequence
tttgagaggtccgcggaattcactgctctgctagactcaccagcctctga
gtctccaggctccaccccaagtgctactataaatgtgtgctaccgcccat
tgttcacatgtgtactggggatctgagcctctcactcttttttttttttt
tgagacagggtttctctgtagagccctggctgtcctggaactcgccttgt
agaccaggctggccttgaactcagaaatctgcctgcctctgcctcccaag
tgctgggattaaaggcgtgtgccaccactgcccagctgagcctttcactc
ttgcacagcaatcattttccctgccgagccatctccctagctctgaatga
tagaacagcaatgcttaaacattttactcctaagagtacaactcaatgct
ttcaaatggttgccacccaacaaaacaaaacagccaatgtgcaattagcc
agactccagtggtgctgtggctgtatacagctataagaagtatcctgccc
aggatttggtagtcacaactatagccgtatatcacagaaaggcactttgg
tcagctatggacctcatacatgacagtggttccatcataccatgtggcct
agagatgtcacatttgtcctagtttaactacactctatagtgctgacaat
tacaaaacttgcaaagccgagtatcactgcattaaatgacttatgactct
atgtcctcgcggctagcagcgccagctttgcagccagccagatctacagc
caaattctgcttcaggattttcctacagtagccccacgccattctttgat
ttgtgtgagtgtatacatgaaggcagaggcatatcctagatgtcattcct
caggcactgtccactttgattttggggggaatcaaaatgtaagatgggtt
gttgtctggtgagctccaggaacccagcccttttcacctctctttcccca
gctccgggattacaagtgtatggcactgtactcaaccttgtacaggaatc
aaactcagttcctcatgctttcatggcactttaccacctgagcccccccc
cccaactcccatatcggtgttttcatctgtg
gaattccctttacttctattttgtggaatagtttgtgcagaactgggatt
agatcttctttgaaggtctggtagaactctgcactaaacccatctggtcc
cgggctttttttggttgggagactattaatgactgcttctatttccttag
gggatatgcgactgtttagaacgttaacttgatcctgatttaactttggt
acctggtatctgtctagaaatttgtccatttcatccaggttttccagttt
tgttgagtatagccttttgtagaaggatctgatggtgttttggatttctt
caggatctgttgttatgtctcccttttcatttctgattttgttaattagg
atgttgtccctgtgccctctagtgagtctagctaagggtttatctatctt
gttgattttctcaaagaaccaactcctcgtttggttaattctttgaatag
ttcttcttgtttctacttggttgatttcacccctgagtttgattatttcc
tgccgtctactcctcttgggtgaatttgcttcccttttctctagagcttt
tagatgtgttgtcaagctgctagtatgtgctctctcccgtttcttcttca
ctcagagctatgagtttccctcttagaaatgctttcattgtgtcccatag
gttgggtatgttgtggcttcattttcatttaaactctaaaaagtctttaa
tttctttctttattccttccttgaccaaggtatcattgagaagagtgttg
ttcagtttctatgtgaatgtgggctttcattatttatgttgttattgaag
atcagccttaggccatggtggtctgataggatacatgggacaatttcaat
atttttgtatctgtttgagggcctgttttgtggccaattatatggtcaat
tttggagaagggcccatgaggtgctgagaagaagttatccttttgtttta
ggaaaaaatattcctgagaaatctgtca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_124084129_124085198
seq2: B6Ng01-075H11.b_43_1108 (reverse)

seq1  CACAGATGAAAACACGGATATGGGAGGTTGGGGGGGGGGGGCTCAGGTGG  50
      ||||||||||||||| ||||||||||  | ||||||||||||||||||||
seq2  CACAGATGAAAACACCGATATGGGAG--TTGGGGGGGGGGGCTCAGGTGG  48

seq1  TAAAGTGCCATGAAAGCATGAGGAACTGAGTTTGATTCCTGTACAAAGGT  100
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TAAAGTGCCATGAAAGCATGAGGAACTGAGTTTGATTCCTGTAC-AAGGT  97

seq1  TGAGTACAGTGCCATACACTTGTAATCACGGAGCTGGGGAAAGAGAGGTA  150
      ||||||||||||||||||||||||||| ||||||||||||||||||||| 
seq2  TGAGTACAGTGCCATACACTTGTAATCCCGGAGCTGGGGAAAGAGAGGTG  147

seq1  GAAAAGGCTGGGTTCCTGGAGCTCACCAGACAACAACCCATCTTACATTT  200
       ||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGGCTGGGTTCCTGGAGCTCACCAGACAACAACCCATCTTACATTT  197

seq1  TGATTCCCCCCAAAATCAAAGTGGACAGTGCCTGAGGAATGACATCTAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCCCCCCAAAATCAAAGTGGACAGTGCCTGAGGAATGACATCTAGG  247

seq1  ATATGCCTCTGCCTTCATGTATACACTCACACAAATCAAAGAATGGCGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCCTCTGCCTTCATGTATACACTCACACAAATCAAAGAATGGCGTG  297

seq1  GGGCTACTGTAGGAAAATTCCTGAAGCAGAATTTGGCTGTAGATCTGGCT  350
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GGGCTACTGTAGGAAAA-TCCTGAAGCAGAATTTGGCTGTAGATCTGGCT  346

seq1  GGCTGCAAAGCTGGCGCTGCTAGCCGCGAGGACATAGAGTCATAAGTCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCAAAGCTGGCGCTGCTAGCCGCGAGGACATAGAGTCATAAGTCAT  396

seq1  TTAATGCAGTGATACTCGGCTTTGCAAGTTTTGTAATTGTCAGCACTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGCAGTGATACTCGGCTTTGCAAGTTTTGTAATTGTCAGCACTATA  446

seq1  GAGTGTAGTTAAACTAGGACAAATGTGACATCTCTAGGCCACATGGTATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTAGTTAAACTAGGACAAATGTGACATCTCTAGGCCACATGGTATG  496

seq1  ATGGAACCACTGTCATGTATGAGGTCCATAGCTGACCAAAGTGCCTTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAACCACTGTCATGTATGAGGTCCATAGCTGACCAAAGTGCCTTTCT  546

seq1  GTGATATACGGCTATAGTTGTGACTACCAAATCCTGGGCAGGATACTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATATACGGCTATAGTTGTGACTACCAAATCCTGGGCAGGATACTTCT  596

seq1  TATAGCTGTATACAGCCACAGCACCACTGGAGTCTGGCTAATTGCACATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCTGTATACAGCCACAGCACCACTGGAGTCTGGCTAATTGCACATT  646

seq1  GGCTGTTTTGTTTTGTTGGGTGGCAACCATTTGAAAGCATTGAGTTGTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTTTTGTTTTGTTGGGTGGCAACCATTTGAAAGCATTGAGTTGTAC  696

seq1  TCTTAGGAGTAAAATGTTTAAGCATTGCTGTTCTATCATTCAGAGCTAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGGAGTAAAATGTTTAAGCATTGCTGTTCTATCATTCAGAGCTAGG  746

seq1  GAGATGGCTCGGCAGGGAAAATGATTGCTGTGCAAGAGTGAAAGGCTCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGGCTCGGCAGGGAAAATGATTGCTGTGCAAGAGTGAAAGGCTCAG  796

seq1  CTGGGCAGTGGTGGCACACGCCTTTAATCCCAGCACTTGGGAGGCAGAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCAGTGGTGGCACACGCCTTTAATCCCAGCACTTGGGAGGCAGAGG  846

seq1  CAGGCAGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAAGGCGAGTTCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAAGGCGAGTTCCA  896

seq1  GGACAGCCAGGGCTCTACAGAGAAACCCTGTCTCAAAAAAAAAAAAAAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGCCAGGGCTCTACAGAGAAACCCTGTCTCAAAAAAAAAAAAAAGA  946

seq1  GTGAGAGGCTCAGATCCCCAGTACACATGTGAACAATGGGCGGTAGCACA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAGGCTCAGATCCCCAGTACACATGTGAACAATGGGCGGTAGCACA  996

seq1  CATTTATAGTAGCACTTGGGGTGGAGCCTGGAGACTCAGAGGCTGGTGAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATAGTAGCACTTGGGGTGGAGCCTGGAGACTCAGAGGCTGGTGAG  1046

seq1  TCTAGCAGAGCAGTGAATTC  1070
      ||||||||||||||||||||
seq2  TCTAGCAGAGCAGTGAATTC  1066

seq1: chr17_42053688_42054246
seq2: B6Ng01-075H11.g_492_1044 (reverse)

seq1  TGACAGATATCTACAGAACATTTTATCCTAAAACAAAAGGATATACCTTC  50
      |||||||| |||   ||| ||||| |||||||||||||||  ||| ||||
seq2  TGACAGATTTCTCAGGAATATTTTTTCCTAAAACAAAAGG--ATAACTTC  48

seq1  TTCTCAGCACCTCACGGGACCTTCTCCAAAATTGACCATATAATTGGTCA  100
      |||||||||||||| ||| |||||||||||||||||||||||||||| ||
seq2  TTCTCAGCACCTCATGGGCCCTTCTCCAAAATTGACCATATAATTGGCCA  98

seq1  CAAAACAGG-CCTC-AATAGATACAAAAATATTGAAATTGTCCCATGTAT  148
      ||||||||| |||| || ||||||||||||||||||||||||||||||||
seq2  CAAAACAGGCCCTCAAACAGATACAAAAATATTGAAATTGTCCCATGTAT  148

seq1  CCTATCAGACCACCATGGCCTAAGACTGATCTTCAATAACAACATAAATA  198
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CCTATCAGACCACCATGGCCTAAGGCTGATCTTCAATAACAACATAAATA  198

seq1  ATGGAAAGCCAACATTCACGTGGAAACTGAATAACACTCTTCTCAATGAT  248
      || ||||||| |||||||| | ||||||||| ||||||||||||||||||
seq2  AT-GAAAGCCCACATTCACATAGAAACTGAACAACACTCTTCTCAATGAT  247

seq1  ACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGGTCAAGGAAGGAATAAAGAAAGAAATTAAAGACTTTTTAGAGTT  297

seq1  T-AATGAAAATGAAGCCACAACGTACCCAAACCTATGGGACACAATGAAA  347
      | |||||||||||||||||||| ||||| |||||||||||||||||||||
seq2  TAAATGAAAATGAAGCCACAACATACCC-AACCTATGGGACACAATGAAA  346

seq1  GCATTTCTAAGAGGGAAACTCATAGCTCTGAGTGCCTCCAAGAAGAAACG  397
      ||||||||||||||||||||||||||||||||||     |||||||||||
seq2  GCATTTCTAAGAGGGAAACTCATAGCTCTGAGTG-----AAGAAGAAACG  391

seq1  GGAGACAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAAA  447
      ||||| |||||||||||||||||||||||||||||||||||||||||| |
seq2  GGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAGCTCTAGAGA  441

seq1  AAAAGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAA  497
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAA  491

seq1  CTCAGGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAAT  547
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTCAGGGGTGAAATCAACCAAGTAGAAACAAGAAGAACTATTCAAAGAAT  541

seq1  TAACCAAACGAG  559
      ||||||||||||
seq2  TAACCAAACGAG  553