BAC Information

Click to search

BAC

Clone NameB6Ng01-075O05
Chromosome7 (Build37)
Map Location 23,840,009 - 23,879,562
singlet/doubletdoublet
Overlap geneEG667586, EG667599
Upstream geneEG620736, EG667444, LOC100043033, LOC100043037, EG667464, EG667469, EG667472, EG667094, LOC100043625, LOC100043626, LOC100043043, LOC100043048, LOC100043632, EG667485, V1rd14, LOC100043051, LOC100043058, EG435947, EG667504, EG667512, LOC100043061, LOC100043638, LOC667527, EG667530, LOC667536, EG667543, LOC100043645, EG667551, LOC100043650, LOC100043067, LOC100043069, LOC670857, LOC620758, EG667570, LOC100043658, LOC100043079, LOC100043083
Downstream geneLOC100043086, LOC100043665, LOC667616, LOC100043667, LOC667623, LOC100043088, EG628664, Nlrp4e, LOC434261, Nlrp5, LOC100043095, EG622032, LOC667651, LOC100043101, LOC100043103, EG546944, V1rd7, V1rd9, EG545934, V1rd22, LOC384573, EG622222, LOC546943, V1rd12, V1rd13, V1rd17, LOC100043121, V1rd16, LOC384575, V1rd20, V1rd18, V1rd15, EG622446, Zfp180
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-075O05.bB6Ng01-075O05.g
ACCDH892319DH892320
length1,162966
definitionDH892319|Mus musculus domesticus DNA, BAC clone: B6Ng01-075O05, 5' end.DH892320|Mus musculus domesticus DNA, BAC clone: B6Ng01-075O05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,840,009 - 23,841,169)(23,878,692 - 23,879,562)
sequence
gaattcagttacataactttattattgagtgcaatatcatattgtttcca
tacatactatttttaatatgttactataatatacgaaattcaattaatta
tttttatgttgcatttatatattcttttatttgttattgatttagttaca
tcccaattgaagcatttcctccctcctaattgtattgaattctgatgatg
gaatcacagactcatagtagactctttactgtctgtattcatatgcaaag
accttggtgtggtaaaatgtgtgttattgtgctcttgacctactgaacca
ataaagatgtagttgcaatacaaaatttacattgaggcaggagtaataaa
atcagtataaaattttatttgagttattatacattcattgtttttcaggc
aatttgcctgtagtgcgatagaatagtgtctcacttatcaagtgaagaaa
ttgtgtcaaatcaattggtaagtgtggacaataaaacagagacccgagga
gagtagtgtctgacctaatcatcactccaggttcctgtaaagccctttcc
atgtctgctcatggtaaatccgtgaaaaccactgaggaagtggctcttca
gatcctcttgctttgccagtttggggttggaactgtggccaatgtctttc
tgtttgtccataatttctctccagtcttgactggttctaaacagaggccc
agacaggtgattttaagccacatggctgtggccaatgccttgactctatt
cctcactatatttccaaacaacatgagtgcttttgcttccaaaactcctc
caaatgaactcaaatgtaaattagaattcttcagtcacatggtggcaaga
agcaaaaatttgtgttccacctgtgtcctgagtatccatcagtttgtcac
tcttgttcctgttaatagagtaaaggtaaacttatactcagagcaagtgt
cccaaatttgtggaattattcctgctacagttgttggttttacagtgtct
taagtaacatccacatttcaattaaggtcactggttccacagataacaga
caataacactgacttctaaaagcaacttgttcggttccaccttctgattc
atgtaggcatggtcttcttgcagagatttccatgatgccaaattcatgac
aatcagggtctg
gaattctgaagaagaggagtcgagaaagagagtaagagccatggggatga
agacaccaggagaactggactcactaaatcaactgagcaaagtacacatg
aatacacagagattgaaacatcaagaatgggcctgcaagggtttgcatca
gattacctgcatatatattaaagctttcagcttagtatttttatggaaca
cctgagtgtgtgaacgaatgagtcactgattactatgccttccctcgggg
tacattttgttctgttttattgtctagaccaggtataatgtgatggattt
tgtcttatattatattctcttttgtcccatttttttgtctcctagaaagt
aattcttttcttttatatatgtatatatttttttattatgtatcttcctc
atttacatttcaaatgctattccaaaagttccccataccctctctccccc
cactcctctacaaaacccactcccacttcttggccatggtgttcccctgt
actgaggcatataaagtttgcaagaccaaggggcctctcttcccagtgat
ggtcgactaggtcatcttctgctacatatgcagcaagagacacgagctct
gggggtacttgttacttcatattgttgttccacctatagggttgcagacc
ccttcagctccttgggtactttcttgaatggaggaagtctactctttcag
cctctggttttcccttgctttaaaatcgatagaaagggataagatcccca
atcatggtttggcgaaaagtaatacattttaagaatgtctttagaatggg
atattctaataagactaactatatgcttattttcttgcaaaagaactttc
cataaacctccaaactaattggttgtcagttttttttttaatttttatta
agtattttcctcacttacatttccaatgctatcccaaagtccccataccc
tccccccctcccctac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_23840009_23841169
seq2: B6Ng01-075O05.b_47_1208

seq1  GAATTCAGTTACACAACTTTATTATTGAGTGCAATATCATATTGTTCCCA  50
      ||||||||||||| |||||||||||||||||||||||||||||||| |||
seq2  GAATTCAGTTACATAACTTTATTATTGAGTGCAATATCATATTGTTTCCA  50

seq1  TACATACTATTTTTAATATGTTACTATAATATACGAAATTAAATTAATTA  100
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TACATACTATTTTTAATATGTTACTATAATATACGAAATTCAATTAATTA  100

seq1  TTTTTATGTTGCATTTATATATTCTTTTATTTGTTATTGATTTAGTTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATGTTGCATTTATATATTCTTTTATTTGTTATTGATTTAGTTACA  150

seq1  TCCAAATTGAAGACTTTCCTCCCTCCTAATTGTATTGAATTCTGATGATA  200
      ||| ||||||||  ||||||||||||||||||||||||||||||||||| 
seq2  TCCCAATTGAAGCATTTCCTCCCTCCTAATTGTATTGAATTCTGATGATG  200

seq1  GAATCACAGACTCATAGTAGACTCTTTACTGTCTGTATTCATATGCAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCACAGACTCATAGTAGACTCTTTACTGTCTGTATTCATATGCAAAG  250

seq1  ACCTTGGTGTGGTAAAATGTGTGTTATTGTGCTCTTGACCTACTGAACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGGTGTGGTAAAATGTGTGTTATTGTGCTCTTGACCTACTGAACCA  300

seq1  ATAAAGATGTAGTTGCAATACAAAATTTACATTGAGGCAGGAGTAATAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGATGTAGTTGCAATACAAAATTTACATTGAGGCAGGAGTAATAAA  350

seq1  ATCAGTATAAAATTTTATTTGAGTTATTATACATTCATTGTTTTTCAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTATAAAATTTTATTTGAGTTATTATACATTCATTGTTTTTCAGGC  400

seq1  AATTTGCCTGTAGTGTGATAGAATAGTGTCTCACTTATCAAGTGAAGAAA  450
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AATTTGCCTGTAGTGCGATAGAATAGTGTCTCACTTATCAAGTGAAGAAA  450

seq1  TTGTGTCAAATCAATTGGTAAGTGTGGACAATATAACAGAGACCCGAGGA  500
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTGTGTCAAATCAATTGGTAAGTGTGGACAATAAAACAGAGACCCGAGGA  500

seq1  GAGTAGTGTCCTACCTAATCATCACTCCAGGGTCCTGTAAAGCCCTCTCC  550
      ||||||||||  ||||||||||||||||||| |||||||||||||| |||
seq2  GAGTAGTGTCTGACCTAATCATCACTCCAGGTTCCTGTAAAGCCCTTTCC  550

seq1  ATGTCTGCTCATGGTAAATCTGTGAAAACCACTGAGGAAGTGGCTCTTCA  600
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATGTCTGCTCATGGTAAATCCGTGAAAACCACTGAGGAAGTGGCTCTTCA  600

seq1  GATCCTCTTGCTTTGCCAGTTTGGGGTTGGAACTGTGGCCAATGTCTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTCTTGCTTTGCCAGTTTGGGGTTGGAACTGTGGCCAATGTCTTTC  650

seq1  TGTTTGTCCATAATTTCTCTCCAGTCATGACTGGTTCTAAAAAGAGGCCC  700
      |||||||||||||||||||||||||| |||||||||||||| ||||||||
seq2  TGTTTGTCCATAATTTCTCTCCAGTCTTGACTGGTTCTAAACAGAGGCCC  700

seq1  AGACAGGTGATTTTAAGCCACATGGCTGTGGCCAATGCCTTGACTCTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGTGATTTTAAGCCACATGGCTGTGGCCAATGCCTTGACTCTATT  750

seq1  CCTCACTATATTTCCAAACAACATGAGTGCTTTTGCTCCCAAAACTCCTC  800
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CCTCACTATATTTCCAAACAACATGAGTGCTTTTGCTTCCAAAACTCCTC  800

seq1  CAACTGAACTCAAATGTAAATTAGAATTCTTCAGTCACATGGTGGCAAGA  850
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGAACTCAAATGTAAATTAGAATTCTTCAGTCACATGGTGGCAAGA  850

seq1  AGCAAAAATTTGTGTTCCACCTGTGTCCTGAGTATCCATCAGTTTGTCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAAATTTGTGTTCCACCTGTGTCCTGAGTATCCATCAGTTTGTCAC  900

seq1  TCTTGTTCCTGTTAATAGAGGTAAAGGTAAACTTATACTCAGAGCAAGTG  950
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TCTTGTTCCTGTTAATAGA-GTAAAGGTAAACTTATACTCAGAGCAAGTG  949

seq1  TCCCAAATTTGTGGAATTATTCCTGCTACAGTTGTTGGTTTTACAGTGTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAATTTGTGGAATTATTCCTGCTACAGTTGTTGGTTTTACAGTGTC  999

seq1  TTAAGTAACATCCACATTCCAATTAAGGTCACTGG-TCCACAGATAACAG  1049
      |||||||||||||||||| |||||||||||||||| ||||||||||||||
seq2  TTAAGTAACATCCACATTTCAATTAAGGTCACTGGTTCCACAGATAACAG  1049

seq1  ACAATAACACTGAC-TCTAAAAGCAACTTGTTCTGTTCCA-CTTCTGGAT  1097
      |||||||||||||| |||||||||||||||||| |||||| ||||| |||
seq2  ACAATAACACTGACTTCTAAAAGCAACTTGTTCGGTTCCACCTTCT-GAT  1098

seq1  TCATTGTAGGCATGGTCTTCTTGAAG-TTTTCCCATGATGCCACATTCAT  1146
      ||| ||||||||||||||||||| ||   || ||||||||||| ||||||
seq2  TCA-TGTAGGCATGGTCTTCTTGCAGAGATTTCCATGATGCCAAATTCAT  1147

seq1  GACCATCATGGTCTG  1161
      ||| |||| ||||||
seq2  GACAATCAGGGTCTG  1162

seq1: chr7_23878692_23879562
seq2: B6Ng01-075O05.g_68_939 (reverse)

seq1  CCAATTAGTTTGGAGGTTTATGGAAAGTTCTTTTGCAAGAAAATAAGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTAGTTTGGAGGTTTATGGAAAGTTCTTTTGCAAGAAAATAAGCAT  50

seq1  ATAGTTAGTCTTATTAGAATATCCCATTCTAAAGACATTCTTAAAATGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTAGTCTTATTAGAATATCCCATTCTAAAGACATTCTTAAAATGTA  100

seq1  TTAC-TTTCGCCAAACCATGATTGGGGATCTCATCCCTTTCTATCGATTT  149
      |||| |||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTACTTTTCGCCAAACCATGATTGGGGATCTTATCCCTTTCTATCGATTT  150

seq1  TAAAGCAAGGGAAAACTAGAGGCTGAAAGAGTAGACTTCCTCCATTTGAG  199
      |||||||||||||||| |||||||||||||||||||||||||||||  ||
seq2  TAAAGCAAGGGAAAACCAGAGGCTGAAAGAGTAGACTTCCTCCATTCAAG  200

seq1  AAAGTACCCAAGGAGCTGAAGGGGTCTGCAACCCTATAGGTAGAACAACA  249
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AAAGTACCCAAGGAGCTGAAGGGGTCTGCAACCCTATAGGTGGAACAACA  250

seq1  ATATGAAGTAACAAGTACCCCCAGAGCTCGTGTCTCTTGCTGCATATGTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAAGTAACAAGTACCCCCAGAGCTCGTGTCTCTTGCTGCATATGTA  300

seq1  GCAGAAGATGACCTAGTCGGCCATCACTGGGAAGAGAGGCCCCTTGGTCT  349
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GCAGAAGATGACCTAGTCGACCATCACTGGGAAGAGAGGCCCCTTGGTCT  350

seq1  TGCAAACTTTATATGCCTCAGTACAGGGGAACACCATGGCCAAGAAGTGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAACTTTATATGCCTCAGTACAGGGGAACACCATGGCCAAGAAGTGG  400

seq1  GAGTGGGTTTTGTAGAGGAGTGGGGGGAGAGAGGGTATGGGGAACTTTTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGGTTTTGTAGAGGAGTGGGGGGAGAGAGGGTATGGGGAACTTTTG  450

seq1  GAATAGCATTTGAAATGTAAATGAGCAAGATACGTAATAAAAATATATAT  499
      ||||||||||||||||||||||||| ||||||| ||||||||| ||||||
seq2  GAATAGCATTTGAAATGTAAATGAGGAAGATACATAATAAAAAAATATAT  500

seq1  ACATATATAAAAGAAAATAATTACTTTCTAGGAGACAAAAAAATGGGACA  549
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ACATATATAAAAGAAAAGAATTACTTTCTAGGAGACAAAAAAATGGGACA  550

seq1  AAAGAGAATATAATATAAGACAAAATCCATCACATTATGCCTGGTCTAGA  599
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAAGAGAATATAATATAAGACAAAATCCATCACATTATACCTGGTCTAGA  600

seq1  CAATAAAACAGAACAAAATGTACCCCGAGGGAAGGCATAGCAATCAGTGA  649
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CAATAAAACAGAACAAAATGTACCCCGAGGGAAGGCATAGTAATCAGTGA  650

seq1  CTCATTCGTTCACACACTCAGGTGTTCCATAAAAATACTAAGCTGAAAGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTCGTTCACACACTCAGGTGTTCCATAAAAATACTAAGCTGAAAGC  700

seq1  TTTAATATATATGCAGGTAATCTGATGTAAACTCTTGCAGGCCCATTCTT  749
      ||||||||||||||||||||||||||| |||| |||||||||||||||||
seq2  TTTAATATATATGCAGGTAATCTGATGCAAACCCTTGCAGGCCCATTCTT  750

seq1  GATGTTTCAATCTCTGTGTATTCATGTGTACTTTGCTTAGTTGATTTAGT  799
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GATGTTTCAATCTCTGTGTATTCATGTGTACTTTGCTCAGTTGATTTAGT  800

seq1  GAGTCCAGTTCTCCTGGTGTCTTCATCCCCATGGCTCTTACTCTCTTTCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCAGTTCTCCTGGTGTCTTCATCCCCATGGCTCTTACTCTCTTTCT  850

seq1  CGACTCCTCTTCTTCAGAATTC  871
      ||||||||||||||||||||||
seq2  CGACTCCTCTTCTTCAGAATTC  872