BAC Information

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BAC

Clone NameB6Ng01-076M22
Chromosome7 (Build37)
Map Location 104,762,786 - 104,895,240
singlet/doubletdoublet
Overlap geneRsf1, LOC100040211, Clns1a, Aqp11, LOC100040594
Upstream geneOdz4, Nars2, Gab2, LOC100040457, Usp35, EG622320, Alg8, Ndufc2, Thrsp, Kctd14, Ints4, 1810020D17Rik, LOC622994
Downstream genePak1, Gdpd4, Myo7a, Capn5, Omp, B3gnt6, Phca, Tsku, LOC100040269, Gucy2d, LOC100040721, EG434215, A630091E08Rik, 2210018M11Rik, LOC100040769, Prkrir
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-076M22.bB6Ng01-076M22.g
ACCDH892964DH892965
length1,039844
definitionDH892964|Mus musculus domesticus DNA, BAC clone: B6Ng01-076M22, 5' end.DH892965|Mus musculus domesticus DNA, BAC clone: B6Ng01-076M22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,762,786 - 104,763,821)(104,894,399 - 104,895,240)
sequence
gaattctgtctagaattttactgtttcggaacttcaagatttaatttatt
atgtatataagtacactgtagctgtcttcagacacaccagaagagggcat
caatcccattacagatggttgtgagccaccatgtggttgctgggaattga
actcaggacttctggaagagcagtctgtgctcttaaccgctgagccatct
ctccagcccaagccaaagtcttttatacagattagaaagtcaaggttcag
gcttaaacgttctgacttcttgcatggggtggaagaactagaaatgagcc
cgtgtgagttggtctgcttgtgcttgtctttggcttcttgcgttaggtaa
gcttcactaggcttttttcactccaccactgcactagcagcctgtcacaa
cattctgttgattttattcctaaactatatctcagttctcagagctgtgt
ctgctacccttagtagctcagactactcatctttgtagatattttcttga
ctttacttcataatttggccctgtactcttaaagcaagcagatgaaagct
tttgttttactatctagtttcctctcatcagtcattgagatatttctaaa
atacagagcagtctcctgcctcaacttgtaaataaaatcagcctccttag
ctggctttataaggctgtctttatggaaagcccctgtcagaagttccata
gtcattattcattgttttttttttttttttttgggggggggtagccattt
acatctacttttctttctatatgaaatcctcctaggccatcctatacttt
aggttttagggtaattgtctgcttatttgtggccagcccatccggaagac
tcattcttgtgggcttgctgaggacaaggactatttttcatttgctgata
gtagactctcagaaattgttgaatgggtgaattgttaaactttgaagata
gctcaagttagagtggtttcagaaataaagctcctgagaagaatgaaagt
ctttagtcttaaagtggtcctgcacaagtattggtattt
gaattctctcacaccccatacccactaaatcagagcctctgggactggga
ccagataaattgcaggttttttttaaagcttcccacgtgattccaaagta
catccaaggttgaggaacaatagatgggctaatcgttgaggctctcaaat
gatagaaaaaaaaaaccccaataaacaaaaatcacatgagtaattactaa
agatgcagccattgctcgttgagtaataagacaaatactgcatcaagagt
tctgagtgcggtgtgcaacatgcccaattaacctagggaattgagagtgt
ggctgtatatgtgtgtgcacgcacacatgcgcacactgtagtgcgcctgt
ggagagccgagaacagctccatggagtctgttctctcctttcacctgatg
agcactcaggagatcaaattcaggtggccagtctttgaggtaagcagctt
cccggggaacccctgtcccaaggggtgtgcgggagctctgggcgttcagg
cctccatcgtgtcctgagcggagagtcagtggccatggcttattctgtgt
cagtctctcatgacattgaaagacatttgtgttttgtttactcctgcttg
cttggtgtcaaatgtcaagatgctaaaacttacaacagtgtcaactattt
ctgtgaactgtttcagaccaactagttctggtaaaaaaaaaaaaaaaaat
caaagatagactataactgataaatttttagcattgtttttgttttggct
ttttaaaaaaacatttatatttatttatggtatgtgttagtgtgcttgcc
tatctgtctgtctgagtgcatgtaaggggggtgggagggctggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_104762786_104763821
seq2: B6Ng01-076M22.b_46_1084

seq1  GAATTCTGTCTAGAATTTTACTGTTTCGGAACTTCAAGATTTAATTTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCTAGAATTTTACTGTTTCGGAACTTCAAGATTTAATTTATT  50

seq1  ATGTATATAAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATATAAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGCAT  100

seq1  CAATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGA  150

seq1  ACTCAGGACTTCTGGAAGAGCAGTCTGTGCTCTTAACCGCTGAGCCATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGGACTTCTGGAAGAGCAGTCTGTGCTCTTAACCGCTGAGCCATCT  200

seq1  CTCCAGCCCAAGCCAAAGTCTTTTATACAGATTAGAAAGTCAAGGTTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCCCAAGCCAAAGTCTTTTATACAGATTAGAAAGTCAAGGTTCAG  250

seq1  GCTTAAACGTTCTGACTTCTTGCATGGGGTGGAAGAACTAGAAATGAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAACGTTCTGACTTCTTGCATGGGGTGGAAGAACTAGAAATGAGCC  300

seq1  CGTGTGAGTTGGTCTGCTTGTGCTTGTCTTTGGCTTCTTGCGTTAGGTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTGAGTTGGTCTGCTTGTGCTTGTCTTTGGCTTCTTGCGTTAGGTAA  350

seq1  GCTTCACTAGGCTTTTTTCACTCCACCACTGCACTAGCAGCCTGTCACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCACTAGGCTTTTTTCACTCCACCACTGCACTAGCAGCCTGTCACAA  400

seq1  CATTCTGTTGATTTTATTCCTAAACTATATCTCAGTTCTCAGAGCTGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTGTTGATTTTATTCCTAAACTATATCTCAGTTCTCAGAGCTGTGT  450

seq1  CTGCTACCCTTAGTAGCTCAGACTACTCATCTTTGTAGATATTTTCTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTACCCTTAGTAGCTCAGACTACTCATCTTTGTAGATATTTTCTTGA  500

seq1  CTTTACTTCATAATTTGGCCCTGTACTCTTAAAGCAAGCAGATGAAAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACTTCATAATTTGGCCCTGTACTCTTAAAGCAAGCAGATGAAAGCT  550

seq1  TTTGTTTTACTATCTAGTTTCCTCTCATCAGTCATTGAGATATTTCTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTACTATCTAGTTTCCTCTCATCAGTCATTGAGATATTTCTAAA  600

seq1  ATACAGAGCAGTCTCCTGCCTCAACTTGTAAATAAAATCAGCCTCCTTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGAGCAGTCTCCTGCCTCAACTTGTAAATAAAATCAGCCTCCTTAG  650

seq1  CTGGCTTTATAAGGCTGTCTTTATGGAAAGCCCCTGTCAGAAGTTCCATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTTATAAGGCTGTCTTTATGGAAAGCCCCTGTCAGAAGTTCCATA  700

seq1  GTCATTATTCATTGTTTTTTTTTTTTTTTTTTTTGGGGGGGGTAGCCATT  750
      |||||||||||||| |||||||||||||||||| ||||||||||||||||
seq2  GTCATTATTCATTG-TTTTTTTTTTTTTTTTTTGGGGGGGGGTAGCCATT  749

seq1  TACATCTACTTTTCTTTCTATATGAAATCCTCCTAGGCCATCCTATACTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCTACTTTTCTTTCTATATGAAATCCTCCTAGGCCATCCTATACTT  799

seq1  TAGGTTTTAGGGTAATTGTCTGCTTATTTGTGGCCAGCCCATCCGGAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTTTAGGGTAATTGTCTGCTTATTTGTGGCCAGCCCATCCGGAAGA  849

seq1  CTCATTCTTGTGGGCTTGCTGAGGACAAGGACTATTTTTCATTTGCTGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTCTTGTGGGCTTGCTGAGGACAAGGACTATTTTTCATTTGCTGAT  899

seq1  AGTAGACTCTCAGAAATTGTTGAATGGGTGAA-TGTTAAACTTTGAAGAT  949
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AGTAGACTCTCAGAAATTGTTGAATGGGTGAATTGTTAAACTTTGAAGAT  949

seq1  AGCTCAAGTTAGAAGTGGTTTCAG-AATAAAGCTCCTGAG-AGAATGAAG  997
      |||||||||||| ||||||||||| ||||||||||||||| |||||||| 
seq2  AGCTCAAGTTAG-AGTGGTTTCAGAAATAAAGCTCCTGAGAAGAATGAAA  998

seq1  GTCTTTAGTCTTAGAGTGGT-CTGCAC-AGTATTGGTATTT  1036
      ||||||||||||| |||||| |||||| |||||||||||||
seq2  GTCTTTAGTCTTAAAGTGGTCCTGCACAAGTATTGGTATTT  1039

seq1: chr7_104894399_104895240
seq2: B6Ng01-076M22.g_70_913 (reverse)

seq1  CCCAGCCCTCCCACCCCCCTTACATGCACTCAGACAGACAGATAGGCAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCCCTCCCACCCCCCTTACATGCACTCAGACAGACAGATAGGCAAG  50

seq1  CACACTAACACATACCATAAATAAATATAAATGTTTTTTTAAAAAGCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTAACACATACCATAAATAAATATAAATGTTTTTTTAAAAAGCCAA  100

seq1  AACAAAAACAATGCTAAAAATTTATCAGTTATAGTCTATCTTTGA--TTT  148
      |||||||||||||||||||||||||||||||||||||||||||||  |||
seq2  AACAAAAACAATGCTAAAAATTTATCAGTTATAGTCTATCTTTGATTTTT  150

seq1  TTTTTTTTTTTTACCAGAACTAGTTGGTCTGAAACAGTTCACAGAAATAG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTACCAGAACTAGTTGGTCTGAAACAGTTCACAGAAATAG  200

seq1  TTGACACTGTTGTAAGTTTTAGCATCTTGACATTTGACACCAAGCAAGCA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACACTGTTGTAAGTTTTAGCATCTTGACATTTGACACCAAGCAAGCA  250

seq1  GGAGTAAACAAAACACAAATGTCTTTCAATGTCATGAGAGACTGACACAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTAAACAAAACACAAATGTCTTTCAATGTCATGAGAGACTGACACAG  300

seq1  AATAAGCCATGGCCACTGACTCTCCGCTCAGGACACGATGGAGGCCTGAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGCCATGGCCACTGACTCTCCGCTCAGGACACGATGGAGGCCTGAA  350

seq1  CGCCCAGAGCTCCCGCACACCCCTTGGGACAGGGGTTCCCCGGGAAGCTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCAGAGCTCCCGCACACCCCTTGGGACAGGGGTTCCCCGGGAAGCTG  400

seq1  CTTACCTCAAAGACTGGCCACCTGAATTTGATCTCCTGAGTGCTCATCAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCTCAAAGACTGGCCACCTGAATTTGATCTCCTGAGTGCTCATCAG  450

seq1  GTGAAAGGAGAGAACAGACTCCATGGAGCTGTTCTCGGCTCTCCACAGGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAGGAGAGAACAGACTCCATGGAGCTGTTCTCGGCTCTCCACAGGC  500

seq1  GCACTACAGTGTGCGCATGTGTGCGTGCACACACATATACAGCCACACTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTACAGTGTGCGCATGTGTGCGTGCACACACATATACAGCCACACTC  550

seq1  TCAATTCCCTAGGTTAATTGGGCATGTTGCACACCGCACTCAGAACTCTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTCCCTAGGTTAATTGGGCATGTTGCACACCGCACTCAGAACTCTT  600

seq1  GATGCAGTATTTGTCTTATTACTCAACGAGCAATGGCTGCATCTTTAGTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAGTATTTGTCTTATTACTCAACGAGCAATGGCTGCATCTTTAGTA  650

seq1  ATTACTCATGTGATTTTTGTTTATTGGGGTTTTTTTTTTCTATCATTTGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTCATGTGATTTTTGTTTATTGGGGTTTTTTTTTTCTATCATTTGA  700

seq1  GAGCCTCAACGATTAGCCCATCTATTGTTCCTCAACCTTGGATGTACTTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTCAACGATTAGCCCATCTATTGTTCCTCAACCTTGGATGTACTTT  750

seq1  GGAATCACGTGGGAAGCTTTAAAAAAAACCTGCAATTTATCTGGTCCCAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCACGTGGGAAGCTTTAAAAAAAACCTGCAATTTATCTGGTCCCAG  800

seq1  TCCCAGAGGCTCTGATTTAGTGGGTATGGGGTGTGAGAGAATTC  842
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGAGGCTCTGATTTAGTGGGTATGGGGTGTGAGAGAATTC  844