BAC Information

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BAC

Clone NameB6Ng01-076O03
Chromosome7 (Build37)
Map Location 19,455,826 - 19,456,436
singlet/doubletsinglet
Overlap genenone
Upstream geneEG381852, Ceacam11, Ceacam13, LOC384560, Ceacam12, Igfl3, LOC671190, Mill1, Psg18, LOC546936, Psg28, LOC666831, EG574429, EG232930, Psg25, EG545925, Psg23, Psg21, EG434540, BC050099, LOC666863, Sycp1-ps1, Psg19, Psg17, Mill2
Downstream genePglyrp1, C530028I08Rik, Nova2, Nanos2, P42pop, Irf2bp1, Foxa3, Sympk, Rshl1, Dmwd, Dmpk, Six5, EG243866, Fbxo46, Qpctl, Snrpd2, Gipr, Eml2, Gpr4, Opa3, Vasp, C79127, Rtn2, Fosb, D830036C21Rik, Ercc1, Cd3eap, Ppp1r13l, Ercc2, Klc3, Ckm, Mark4, 4933417E01Rik, Bloc1s3, Trappc6a, Nkpd1, BC024868, Gemin7, Zfp296, Sfrs16, Relb, Clptm1, Apoc2, Apoc4, Apoc1, Apoe, Tomm40, Pvrl2, Bcam, Cblc, Bcl3, Ceacam16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-076O03.bB6Ng01-076O03.g
ACCDH893016DH893017
length1,0011,020
definitionDH893016|Mus musculus domesticus DNA, BAC clone: B6Ng01-076O03, 5' end.DH893017|Mus musculus domesticus DNA, BAC clone: B6Ng01-076O03, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttttgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgatggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcacacaatatgtactcact
gataagtggatattagcccaaaacctaggatacccaagatataagataca
atttcctaaacacatgaaactcaagaaaaatgaagactgaagtgtggaca
ctatgcccctccttagaagtgggaacaaaacacccttggaaggaattaca
gagacaaagtttggagctgagatgaaaggatggtccatgtagagattttc
atatccagggatccaccccataatcagcatccaaaggctgacaccattgc
atacactagcaagattttattgaaaggacccagatgtagctgtctcttgt
gagactatgccggggcctagcaaacacagaagtggatgctcacagtcagc
taatgaatggatcacagggctcccaatggaggagctagagaaagtaccca
aggagctaaagggatctgcaacctataggcggacacatatgaactaacca
gtaccccgagtcttgctctagctgcttattatcaaagaatggcctcgtcg
t
gaattcactggtcttaccatgttccccatcatcctgaagcagctgggctg
atagaaagatggaatggccttttgaagacgcagttacagcgccaattagg
tggtaacagcttggaaggctggggtagagttcttcagaaggcagtatatg
ctttgaatcagcgctcgatatatggtacagtttcacccatagccaggatt
catgggtccaggaatcaaggggtggaaaagggaatagttccacttactat
cactcctagtgaccctctaggaaaatttttgcttcctgtccccatatctc
taggttctgctggcttagaagttttggctccagagaggggcgtgctccta
ccaggagctacaacaaacattccattgaactggaagctcagacttccccc
tggtcattttgggcttctaatgcccttaaaccaacaggctaaaaaaggaa
taacagtgttaggaggggtgatagatccagattaccatggggaaattgga
ttacctcttcacaatggtggtaagcaagattatgtctggagtgtaggaga
tcccttagggcgtctcttagtactaccatgtcctgtgattaaagtcaatg
ggaaactacaacagcctaatccaagcaggatgacaaaggacacagaccca
tcaggaatgaaggtatgggtcaatcctccaggaaaagagccaagacctgc
tgaggtgctggctgaaggagaaggaaatacagaatggatagtagaggaag
gtagttataaataccaattaggccacgtaaccagttgcagaaacgaggat
tataaagtaatatgaatacccactgtatatttacaaatgcgtttgcgatt
tgtacgagggatagttatatcatgttaggcgtattcacacccttgttatt
gtttcacgtgaacatgagatattatttgtgtcaagtgacaagggtgattg
tagtggtaattcctggtggcacttgacatatattgggaatgaatacaatc
agaaattgagaggctcacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_19455826_19456436
seq2: B6Ng01-076O03.g_484_1089

seq1  TTCTAATGCCCTTAAACCAACAGGCTAAAAAAGGAATAACAGTGTTAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATGCCCTTAAACCAACAGGCTAAAAAAGGAATAACAGTGTTAGGA  50

seq1  GGGGTGATAGATCCAGATTACCATGGGGAAATTGGATTACCTCTTCACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGATAGATCCAGATTACCATGGGGAAATTGGATTACCTCTTCACAA  100

seq1  TGGTGGTAAGCAAGATTATGTCTGGAGTGCAGGAGATCCCTTAGGGCGTC  150
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGGTGGTAAGCAAGATTATGTCTGGAGTGTAGGAGATCCCTTAGGGCGTC  150

seq1  TCTTAGTACTACCATGTCCTGTGATTAAAGTCAATGGGAAACTACAACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGTACTACCATGTCCTGTGATTAAAGTCAATGGGAAACTACAACAG  200

seq1  CCTAATCCAAGCAGGATGACAAAGGACGCAGACCCATCAGGAATGAAGGT  250
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CCTAATCCAAGCAGGATGACAAAGGACACAGACCCATCAGGAATGAAGGT  250

seq1  ATGGGTCAATCCTCCAGGAAAAGAGCCAAGACCTGCTGAGGTGCTGGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTCAATCCTCCAGGAAAAGAGCCAAGACCTGCTGAGGTGCTGGCTG  300

seq1  AAGGTGAAGGAAATACAGAATGGGTAGTAGAGGAAGGTAGTTATAAATAC  350
      |||| |||||||||||||||||| ||||||||||||||||||||||||||
seq2  AAGGAGAAGGAAATACAGAATGGATAGTAGAGGAAGGTAGTTATAAATAC  350

seq1  CAATTAAGGCCACGTAACCAGTTGCAGAAACGAGGATTATAAAGTAATAT  400
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATT-AGGCCACGTAACCAGTTGCAGAAACGAGGATTATAAAGTAATAT  399

seq1  GAATGCCCATTGTAAATTTACTAATGCGTTTGCGA-TTGTACGAGGGATA  449
      |||| |||| |||| |||||| ||||||||||||| ||||||||||||||
seq2  GAATACCCACTGTATATTTACAAATGCGTTTGCGATTTGTACGAGGGATA  449

seq1  GTTATATCATGTTAGGCGTATTTACAACCTTGTTATTGTTTCATGTGAAC  499
      |||||||||||||||||||||| ||| |||||||||||||||| ||||||
seq2  GTTATATCATGTTAGGCGTATTCACACCCTTGTTATTGTTTCACGTGAAC  499

seq1  ATGAGATATTATTTGTGTCAAGTTGACAAGGGGTGGATTGTAGTGGCTAT  549
      |||||||||||||||||||||| |||||||||   |||||||||||  ||
seq2  ATGAGATATTATTTGTGTCAAG-TGACAAGGG--TGATTGTAGTGGTAAT  546

seq1  TCCTGGTTGTCAACTTGACA-ATATTTGGAATGAACTACAATCCGGAATT  598
      ||||||| |   |||||||| ||||| |||||||| ||||||| | ||||
seq2  TCCTGGTGG--CACTTGACATATATTGGGAATGAA-TACAATCAGAAATT  593

seq1  GGAAGGCTCACCA  611
      |  ||||||||||
seq2  GAGAGGCTCACCA  606