BAC Information

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BAC

Clone NameB6Ng01-078I03
Chromosome7 (Build37)
Map Location 12,805,852 - 12,806,736
singlet/doubletsinglet
Overlap geneLOC100043092
Upstream geneLOC672893, LOC546931, LOC675762, Zscan4e, LOC665857, LOC665861, Zscan4f, LOC673742, LOC665887, LOC637541, LOC100042361, Zscan4-ps2, LOC675782, LOC100042386, LOC665926, LOC637571, LOC100043042, LOC628853, V1rg1, V1rg2, EG628898, V1rg5, V1rg6, LOC665999, V1rg4, LOC100042423, LOC628946, LOC100043075, LOC100042433, V1rg7, LOC100042437, V1rg3, LOC100042446
Downstream geneV1rg9, V1rg12, V1rg8, V1rg11, Zfp551, EG666065, Zfp606, 2900092C05Rik, EG637908, EG666085, Vmn2r55, LOC629079, LOC629081, EG232875, LOC100043128, LOC100042515, Zfp329, Zfp110, Zfp128, Zscan22, Rps5, 2310014L17Rik, 1810019N24Rik, Zfp324, Zfp446, Slc27a5, ZBTB45, LOC100042553, Trim28, Chmp2a, Ube2m, Mzf1, V1rj3, LOC100043156, V1rk1, LOC666177, EG232887, V1rj2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078I03.bB6Ng01-078I03.g
ACCDH894185DH894186
length8851,062
definitionDH894185|Mus musculus domesticus DNA, BAC clone: B6Ng01-078I03, 5' end.DH894186|Mus musculus domesticus DNA, BAC clone: B6Ng01-078I03, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaagcaggtcagaaagcaagagttgatgcagaggccatggaggga
tgttcattactggcttgcttcccctggcttgctcagccttctctgttata
gaacccaaggctgccagcccagagatggtcccacccacaaggggcctttc
ccccttgatcactaattgagaagatatcccacagctggatctcatggagg
catttccccaactgaagctcctttctctgtgataaccccagccagtgtca
agttgacacataaaaccagccagtgcagccagtaagttttttaaatgttc
ctagactatattttgggcttgttttatttattttttctcatgaagggagc
attgatagtgagttattcctgatatgagggaaaaacaaaacattttagca
aaaatcacactatctaactaactaaggagcagctaactagaaatgatcta
tctaacaactaactaattctggtgcagccaagctagcttatgctgtagca
gtggcggtggagctccatctgtcatcctttggaactcaggtgttgttgct
ctcaggtgacaggctatgggcagaaagtgctgacaggcaggacagagcag
agagttctgggttccagtcagactatgtgggaggacaagtctgaaactta
catggctggtctggaaaactagtggccgtggagtccatttctctgccaaa
atgcgtttagcaaaaaattcctgtctctatctctgtgtctctatctctct
cttctttgctctttccttttcttttttcttctttccttttctttactctt
cttttcttccttcctctttcctctcttcctttttttcttcctgtcttctg
tccttccttccttccttccttccttccttactttc
gaattctcggtttagttctataccccatttttttcattggtttgtttggg
atttttagttagcttcttgagttcttaatatattttggatattagcccta
tatcagatttagggttagtgaaggtttttatttcccaatctttaggttgc
tgatttgtctaattgactatatcctttgcctaatagaagcttttataagg
tcccataatcaattcttgatcttagagtgtgagccattagagttctgttt
cagaaatttcttcctgtgcccatgagtgcaaggctctttcctactttctc
ttctattagattgaatgtatctggttttatgttgaggtccttgattcact
caaacttgagctttgtggaaggtgacgaatatggatctattttccttttt
ctacatacagacagtcaattagaccagcaccatttattgaagatgctttc
ttttgttccatgaatatgtttggcttctttgtcaaagatcaagttgagtt
aacttttataatccagtcactttgctgaagttgaggatcatccatagtag
ttctttggtagaattatgtatagtactatatcatctgcagagtgacatat
tgacttcttcctttccaatttgtattcctttgatctcctttttcttgtct
aattgcttctggctaggacttcaaggactatcttgaataaatagggagag
ggtggaacacattctcttttccctggttttagtgggatcacttcacattt
ttctccatttaatttgatgttggctattggtctgatgtatattgtttatt
attatgtttagttatgtgtcttgagatctttccaaaacttttaacattaa
ggtgtgttgttttttaccaaaggatttttcaacatctaatgagatgattt
gtgttttttcctttgagttatttatatattggattatattgatgactcct
atatatgaaccatcttccattcatgtgaacgaagcctacgtgataatgtg
aatgacaatttaatgtgttttgcataaatttaaagaccttactttgtatt
ttttgccatgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_12805852_12806736
seq2: B6Ng01-078I03.b_47_931 (reverse)

seq1  GAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGACAGAAGACAGGAAGA  50
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTAAGGAAGGAAGGAAGGAAGGAAGGAAGGACAGAAGACAGGAAGA  50

seq1  AAAAAAGGAAGAGAGGAAAGAGGAAGGAAGAAAAGAAGAGTAAAGAAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGGAAGAGAGGAAAGAGGAAGGAAGAAAAGAAGAGTAAAGAAAAG  100

seq1  GAAAGAAGAAAAAAGAAAAGGAAAGAGCAAAGAAGAGAGAGATAGAGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAGAAAAAAGAAAAGGAAAGAGCAAAGAAGAGAGAGATAGAGACA  150

seq1  CAGAGATAGAGACAGGAATTTTTTGCTAAACGCATTTTGGCAGAGAAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATAGAGACAGGAATTTTTTGCTAAACGCATTTTGGCAGAGAAATG  200

seq1  GACTCCACGGCCACTAGTTTTCCAGACCAGCCATGTAAGTTTCAGACTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCACGGCCACTAGTTTTCCAGACCAGCCATGTAAGTTTCAGACTTG  250

seq1  TCCTCCCACATAGTCTGACTGGAACCCAGAACTCTCTGCTCTGTCCTGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCACATAGTCTGACTGGAACCCAGAACTCTCTGCTCTGTCCTGCC  300

seq1  TGTCAGCACTTTCTGCCCATAGCCTGTCACCTGAGAGCAACAACACCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGCACTTTCTGCCCATAGCCTGTCACCTGAGAGCAACAACACCTGA  350

seq1  GTTCCAAAGGATGACAGATGGAGCTCCACCGCCACTGCTACAGCATAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAAAGGATGACAGATGGAGCTCCACCGCCACTGCTACAGCATAAGC  400

seq1  TAGCTTGGCTGCACCAGAATTAGTTAGTTGTTAGATAGATCATTTCTAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTGGCTGCACCAGAATTAGTTAGTTGTTAGATAGATCATTTCTAGT  450

seq1  TAGCTGCTCCTTAGTTAGTTAGATAGTGTGATTTTTGCTAAAATGTTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGCTCCTTAGTTAGTTAGATAGTGTGATTTTTGCTAAAATGTTTTG  500

seq1  TTTTTCCCTCATATCAGGAATAACTCACTATCAATGCTCCCTTCATGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCCTCATATCAGGAATAACTCACTATCAATGCTCCCTTCATGAGA  550

seq1  AAAAATAAATAAAACAAGCCCAAAATATAGTCTAGGAACATTTAAAAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAAATAAAACAAGCCCAAAATATAGTCTAGGAACATTTAAAAAAC  600

seq1  TTACTGGCTGCACTGGCTGGTTTTATGTGTCAACTTGACACTGGCTGGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGGCTGCACTGGCTGGTTTTATGTGTCAACTTGACACTGGCTGGGG  650

seq1  TTATCACAGAGAAAGGAGCTTCAGTTGGGGAAATGCCTCCATGAGATCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCACAGAGAAAGGAGCTTCAGTTGGGGAAATGCCTCCATGAGATCCA  700

seq1  GCTGTGGGATATCTTCTCAATTAGTGATCAAGGGGGAAAGGCCCCTTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGGGATATCTTCTCAATTAGTGATCAAGGGGGAAAGGCCCCTTGTG  750

seq1  GGTGGGACCATCTCTGGGCTGGCAGCCTTGGGTTCTATAACAGAGAAGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGACCATCTCTGGGCTGGCAGCCTTGGGTTCTATAACAGAGAAGGC  800

seq1  TGAGCAAGCCAGGGGAAGCAAGCCAGTAATGAACATCCCTCCATGGCCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAAGCCAGGGGAAGCAAGCCAGTAATGAACATCCCTCCATGGCCTC  850

seq1  TGCATCAACTCTTGCTTTCTGACCTGCTTGAATTC  885
      |||||||||||||||||||||||||||||||||||
seq2  TGCATCAACTCTTGCTTTCTGACCTGCTTGAATTC  885