BAC Information

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BAC

Clone NameB6Ng01-079E20
Chromosome7 (Build37)
Map Location 122,977,736 - 123,162,528
singlet/doubletdoublet
Overlap geneSox6, LOC100042779
Upstream geneInsc, EG627967, LOC668472
Downstream gene1110006G14Rik, EG668479, LOC100043313, 1110004F10Rik, Plekha7, Rps13, Pik3c2a, LOC100042798, Nucb2, LOC100043320, EG668484, LOC668485, LOC546993, LOC100043330
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079E20.bB6Ng01-079E20.g
ACCDH894748DH894749
length1,1641,031
definitionDH894748|Mus musculus domesticus DNA, BAC clone: B6Ng01-079E20, 5' end.DH894749|Mus musculus domesticus DNA, BAC clone: B6Ng01-079E20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,977,736 - 122,978,910)(123,161,496 - 123,162,528)
sequence
gaattcaagtagagaaagaaatgaaagggatttcttacttaatctttccc
agtctatgacagctatagggaatattatatccaatttgcagacaagagac
tgagaaggaacactgcaagcaaattgcaagacgaagatttatatctgggc
ctaaatttgctgtttttattattcagtggctcagagaacaaattacttca
taagctacggcctatcacagttcctttctacatcaggcactgtacaaatt
taccagggaaatgtgctcttggtgaggaatcactgtttaacagggcaggg
gttcttctgtacactggtgtcgctgtcttacaagatctccatctgggttt
tgtggctattgctttgggtttggtattctcagtttgcaatgctagggcgt
acacacaggtaagggctacagccacagcccagcttctttcatgtcgtgtc
catgcctaagatcaaatgtaacacaagtaccaagttttcaggatgagtgt
gagagaatagaccatcaaaacacctgcaaccttcaccaaagtgcagagcc
ttcttagaccttcttagagccctaggcaggaattaggcatgggacatata
tctgtaatcccagcatttagaaggctgaggcaggagaataacagaaactc
aagattacttccattacatagtgaaacaaataaaataaaacttcttataa
ggatgcccaccattcttatatatgtatatacatatattcatatatatatg
aatacatatatatatgaatcattacagtataatctaatatttggcacact
aaattttaaagtaacaaaaattccacacgttgagttgcatgtctctgttt
atttctggttcctattagttccttccactcacttgactgcagtccctctg
accctcacccctgctctgggaatagctgggttcattctacccctcctagg
gagggagtcgctacactggcagctctctgcctggaactctgcttccacta
tgcctgacacttcctcttctgtcttcatttcttgttttattctgtcccaa
gaggatattacttactttctggagcttgcctttcgtgtcgcctgttttcc
tctctgtagatgtaacctctggggctgggttttctctttggctccggatg
tgtccaaggcatgg
gaattccaggctgatttactgtgtctttcctgtggtctttgtttttattg
tataagttttgtgttgcagaggtctgacattacccaaataactctacatt
aggagtatttccaaaaactgtagtctccttttgagtcattgagtctcatt
agtaaaagaatttcaaaacagaaaaaaatgaaaatcttcactgtttcaca
ggtttgtcttgaaaggtagatgttacatatgacacctcagcatttggagg
cagtagttagtaaggcctgtggtactgtctgtagtctcatcctttgttct
tctacctcagccaggacaaccacttcaccaactgttacacacttcctcag
ttacccctgggaattacttttattaaaaaccaaccaaccaaacaaaaaac
aaacaaacaaactcatggccaagattgtatcttctgctgtgtttcagtgt
tatatttcagaaatatcactttaggcatgctaagaaacaagaaacatgta
gatatattaatctgaaaaaacaaggcatgatatgtctttgtgcaaatttt
cagccgtggtttctatgagtctttctttttttatgtatatatatttttta
ttaggtattttcctcgtttacattttcaatgctatcccaaaggtccccca
aacccacccccccaatcccctacccacccactgcccctttttggccctgg
tattcccctgtactggggcatataaagtttgcaagtccaatgggcctctc
tttgcagtgatgaccgactaggccatcttttgatacatatctatgagtct
ttcaatcttgtttgtgacagaactgatgtacaaccccagaggttgtcatt
cacattgcattctgggtaatggctcctccaaagtggtgtattaaatagct
atgattttcatttcatgaagggattgtatattgttgccctattgttatct
tggttttttttttgtagcttcttgatggaagcaacaagacaaaacatgca
acctgtttatttatgaagaaactctaaggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_122977736_122978910
seq2: B6Ng01-079E20.b_44_1207

seq1  GAATTCAAGTAGAGAAAGAAATGAAAGGGATTTCTTACTTAATCTTTCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTAGAGAAAGAAATGAAAGGGATTTCTTACTTAATCTTTCCC  50

seq1  AGTCTATGACAGCTATAGGGAATATTATATCCAATTTGCAGACAAGAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTATGACAGCTATAGGGAATATTATATCCAATTTGCAGACAAGAGAC  100

seq1  TGAGAAGGAACACTGCAAGCAAATTGCAAGACGAAGATTTATATCTGGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGGAACACTGCAAGCAAATTGCAAGACGAAGATTTATATCTGGGC  150

seq1  CTAAATTTGCTGTTTTTATTATTCAGTGGCTCAGAGAACAAATTACTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATTTGCTGTTTTTATTATTCAGTGGCTCAGAGAACAAATTACTTCA  200

seq1  TAAGCTACGGCCTATCACAGTTCCTTTCTACATCAGGCACTGTACAAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTACGGCCTATCACAGTTCCTTTCTACATCAGGCACTGTACAAATT  250

seq1  TACCAGGGAAATGTGCTCTTGGTGAGGAATCACTGTTTAACAGGGCAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGGGAAATGTGCTCTTGGTGAGGAATCACTGTTTAACAGGGCAGGG  300

seq1  GTTCTTCTGTACACTGGTGTCGCTGTCTTACAAGATCTCCATCTGGGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTCTGTACACTGGTGTCGCTGTCTTACAAGATCTCCATCTGGGTTT  350

seq1  TGTGGCTATTGCTTTGGGTTTGGTATTCTCAGTTTGCAATGCTAGGGCGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCTATTGCTTTGGGTTTGGTATTCTCAGTTTGCAATGCTAGGGCGT  400

seq1  ACACACAGGTAAGGGCTACAGCCACAGCCCAGCTTCTTTCATGTCGTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAGGTAAGGGCTACAGCCACAGCCCAGCTTCTTTCATGTCGTGTC  450

seq1  CATGCCTAAGATCAAATGTAACACAAGTACCAAGTTTTCAGGATGAGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTAAGATCAAATGTAACACAAGTACCAAGTTTTCAGGATGAGTGT  500

seq1  GAGAGAATAGACCATCAAAACACCTGCAACCTTCACCAAAGTGCAGAGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAATAGACCATCAAAACACCTGCAACCTTCACCAAAGTGCAGAGCC  550

seq1  TTCTTAGACCTTCTTAGAGCCCTAGGCAGGAATTAGGCATGGGACATATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAGACCTTCTTAGAGCCCTAGGCAGGAATTAGGCATGGGACATATA  600

seq1  TCTGTAATCCCAGCATTTAGAAGGCTGAGGCAGGAGAATAACAGAAACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAATCCCAGCATTTAGAAGGCTGAGGCAGGAGAATAACAGAAACTC  650

seq1  AAGATTACTTCCATTACATAGTGAAACAAATAAAATAAAACTTCTTATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTACTTCCATTACATAGTGAAACAAATAAAATAAAACTTCTTATAA  700

seq1  GGATGCCCACCATTCTTATATATGTATATACATATATTCATATATATATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCCCACCATTCTTATATATGTATATACATATATTCATATATATATG  750

seq1  AATACATATATATATGAATCATTACAGTATAATCTAATATTTGGCACACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATATATATATGAATCATTACAGTATAATCTAATATTTGGCACACT  800

seq1  AAATTTTAAAGTAACAAAAATTCCACACGTTGAGTTGCATGTCTCTGTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTAAAGTAACAAAAATTCCACACGTTGAGTTGCATGTCTCTGTTT  850

seq1  A-TTCTGGTTCCTATTAGTTCCTTCCACTCACTTGACTGCAGTCCCTCTG  899
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGGTTCCTATTAGTTCCTTCCACTCACTTGACTGCAGTCCCTCTG  900

seq1  ACCCTCACCCCTGCTCT-GGAATAGCTGGGTTCATTTCTACCCCTCCTAG  948
      ||||||||||||||||| |||||||||||||||| |||||||||||||||
seq2  ACCCTCACCCCTGCTCTGGGAATAGCTGGGTTCA-TTCTACCCCTCCTAG  949

seq1  GGAGGGAGTCGCTACACTGGCAGCTCCTCTGCCTGGAACTCTGCTTCCAC  998
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GGAGGGAGTCGCTACACTGGCAGCT-CTCTGCCTGGAACTCTGCTTCCAC  998

seq1  TATGCCTGAACACTTCCTCTTTCTGTCTTCATTTCTTGTTTTATTCTGTC  1048
      |||||||| |||||||||| ||||||||||||||||||||||||||||||
seq2  TATGCCTG-ACACTTCCTC-TTCTGTCTTCATTTCTTGTTTTATTCTGTC  1046

seq1  CCATAGAGGATATTACTTTACTTTCT-GAGCTTGCCTTTCTGTTGTCGCC  1097
      ||| |||||||||||| ||||||||| |||||||||||||   |||||||
seq2  CCA-AGAGGATATTAC-TTACTTTCTGGAGCTTGCCTTTC--GTGTCGCC  1092

seq1  TGTTT--CTCTCTGTTAGAATGTAACCTCCTGGGGCTGGGTTTTTCTCTT  1145
      |||||  ||||||| ||| ||||||||| ||||||||||| |||||||||
seq2  TGTTTTCCTCTCTG-TAG-ATGTAACCT-CTGGGGCTGGG-TTTTCTCTT  1138

seq1  TTGCTCACAGATGTGTCCCCAAGGCCATGG  1175
      | |||| | |||||||  |||||| |||||
seq2  TGGCTC-CGGATGTGT--CCAAGG-CATGG  1164

seq1: chr7_123161496_123162528
seq2: B6Ng01-079E20.g_66_1096 (reverse)

seq1  TTCCT--GAGTTTCTTCATAAAATAACAGGTTGCATGTTTGTTCTTGTTG  48
      |||||  |||||||||||||||  ||||||||||||||||  ||||||||
seq2  TTCCTTAGAGTTTCTTCATAAATAAACAGGTTGCATGTTTTGTCTTGTTG  50

seq1  CTCCCATCAAGAAAGCTACAAAAAAAAAAACCAAGATAAACAATAGGGCA  98
      || |||||||| ||||||| ||||||||||||||||| ||||||||||||
seq2  CTTCCATCAAG-AAGCTAC-AAAAAAAAAACCAAGAT-AACAATAGGGCA  97

seq1  ACAATATACAATCCCTTCCTGAAATGAAAATCATAGCTATTTAATACACC  148
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ACAATATACAATCCCTTCATGAAATGAAAATCATAGCTATTTAATACACC  147

seq1  ACTTTGGAGGAGCCATTTACCCAGAATGCAATGTGAATGACAACCTCTGG  198
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ACTTTGGAGGAGCCA-TTACCCAGAATGCAATGTGAATGACAACCTCTGG  196

seq1  GGTTGTACATCAGTTCTGTCACAAACAAGATTGAAAGACTCATAGATATG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTACATCAGTTCTGTCACAAACAAGATTGAAAGACTCATAGATATG  246

seq1  TATCAAAAGATGGCCTAGTCGGTCATCACTGCAAAGAGAGGCCCATTGGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAAAGATGGCCTAGTCGGTCATCACTGCAAAGAGAGGCCCATTGGA  296

seq1  CTTGCAAACTTTATATGCCCCAGTACAGGGGAATACCAGGGCCAAAAAGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAAACTTTATATGCCCCAGTACAGGGGAATACCAGGGCCAAAAAGG  346

seq1  GGCAGTGGGTGGGTAGGGGATTGGGGGGGTGGGTTTGGGGGACCTTTGGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTGGGTGGGTAGGGGATTGGGGGGGTGGGTTTGGGGGACCTTTGGG  396

seq1  ATAGCATTGAAAATGTAAACGAGGAAAATACCTAATAAAAAATATATATA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCATTGAAAATGTAAACGAGGAAAATACCTAATAAAAAATATATATA  446

seq1  CATAAAAAAAGAAAGACTCATAGAAACCACGGCTGAAAATTTGCACAAAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAAAAAGAAAGACTCATAGAAACCACGGCTGAAAATTTGCACAAAG  496

seq1  ACATATCATGCCTTGTTTTTTCAGATTAATATATCTACATGTTTCTTGTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATCATGCCTTGTTTTTTCAGATTAATATATCTACATGTTTCTTGTT  546

seq1  TCTTAGCATGCCTAAAGTGATATTTCTGAAATATAACACTGAAACACAGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGCATGCCTAAAGTGATATTTCTGAAATATAACACTGAAACACAGC  596

seq1  AGAAGATACAATCTTGGCCATGAGTTTGTTTGTTTGTTTTTTGTTTGGTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATACAATCTTGGCCATGAGTTTGTTTGTTTGTTTTTTGTTTGGTT  646

seq1  GGTTGGTTTTTAATAAAAGTAATTCCCAGGGGTAACTGAGGAAGTGTGTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGTTTTTAATAAAAGTAATTCCCAGGGGTAACTGAGGAAGTGTGTA  696

seq1  ACAGTTGGTGAAGTGGTTGTCCTGGCTGAGGTAGAAGAACAAAGGATGAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTGGTGAAGTGGTTGTCCTGGCTGAGGTAGAAGAACAAAGGATGAG  746

seq1  ACTACAGACAGTACCACAGGCCTTACTAACTACTGCCTCCAAATGCTGAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAGACAGTACCACAGGCCTTACTAACTACTGCCTCCAAATGCTGAG  796

seq1  GTGTCATATGTAACATCTACCTTTCAAGACAAACCTGTGAAACAGTGAAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCATATGTAACATCTACCTTTCAAGACAAACCTGTGAAACAGTGAAG  846

seq1  ATTTTCATTTTTTTCTGTTTTGAAATTCTTTTACTAATGAGACTCAATGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCATTTTTTTCTGTTTTGAAATTCTTTTACTAATGAGACTCAATGA  896

seq1  CTCAAAAGGAGACTACAGTTTTTGGAAATACTCCTAATGTAGAGTTATTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAAGGAGACTACAGTTTTTGGAAATACTCCTAATGTAGAGTTATTT  946

seq1  GGGTAATGTCAGACCTCTGCAACACAAAACTTATACAATAAAAACAAAGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAATGTCAGACCTCTGCAACACAAAACTTATACAATAAAAACAAAGA  996

seq1  CCACAGGAAAGACACAGTAAATCAGCCTGGAATTC  1033
      |||||||||||||||||||||||||||||||||||
seq2  CCACAGGAAAGACACAGTAAATCAGCCTGGAATTC  1031