BAC Information

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BAC

Clone NameB6Ng01-080N01
Chromosome7 (Build37)
Map Location 19,455,826 - 19,456,469
singlet/doubletsinglet
Overlap genenone
Upstream geneEG381852, Ceacam11, Ceacam13, LOC384560, Ceacam12, Igfl3, LOC671190, Mill1, Psg18, LOC546936, Psg28, LOC666831, EG574429, EG232930, Psg25, EG545925, Psg23, Psg21, EG434540, BC050099, LOC666863, Sycp1-ps1, Psg19, Psg17, Mill2
Downstream genePglyrp1, C530028I08Rik, Nova2, Nanos2, P42pop, Irf2bp1, Foxa3, Sympk, Rshl1, Dmwd, Dmpk, Six5, EG243866, Fbxo46, Qpctl, Snrpd2, Gipr, Eml2, Gpr4, Opa3, Vasp, C79127, Rtn2, Fosb, D830036C21Rik, Ercc1, Cd3eap, Ppp1r13l, Ercc2, Klc3, Ckm, Mark4, 4933417E01Rik, Bloc1s3, Trappc6a, Nkpd1, BC024868, Gemin7, Zfp296, Sfrs16, Relb, Clptm1, Apoc2, Apoc4, Apoc1, Apoe, Tomm40, Pvrl2, Bcam, Cblc, Bcl3, Ceacam16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080N01.bB6Ng01-080N01.g
ACCDH895844DH895845
length1,0481,186
definitionDH895844|Mus musculus domesticus DNA, BAC clone: B6Ng01-080N01, 5' end.DH895845|Mus musculus domesticus DNA, BAC clone: B6Ng01-080N01, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactggtcttaccacattccccatcatcctgaagcagctggtctg
atagaaagatggaatggccttttgaagacgcagttacagcgccaattagg
tggtaacagcttggaaggctggggcagagttcttcagaaggcagtatatg
ctttgaatcagcgctcaatatatggtacagtttcacccatagccaggatt
catgggtccaggaatcaaggggtggaaaacagaatagttccacttactat
cactcctagtgaccctctaggaaaatttttgcttcctgtccccataactc
taggttctgctggcttagaagttttggctccagagaggggagtgctccta
ccaggagctacaacaaacattccattgaactggaagctcagacttccccc
tggtcattttgggcttctaatgcccttaaaccaacaggctaaaaaaggaa
taacagtgttaggaggggtgatagatccagattaccatggagaaattgga
ttacctcttcacaatggtggtaagcaagattatgtctggagtgtaggaga
tcccttagggcgtctcttagtactaccatgtcctgtgattaaagtcaatg
ggaaactacaacagcctaatccaagcaggatgacaaaggacgcagaccca
tcaggaatgaaggtatgggtcaatcctccaggaaaagagccaagacctgc
tgaggtgctggctgaaggtgaaggaaatacagaatgggtagtagaggaag
gtagttataaataccaattaaggccacgtaaccagttgcagaaacgagga
ttataaagtaatatgaatgcccattgtaaatttacaaatgcgtttgcgat
tgtacgaggaatagttatatcatgttaggcgtatttacaaccttgttatt
gtttcatgtgaacatgagatattattgtgtcaagttgacacgggtggatt
gtagtggctattcctggttgtcaacttgacatatttggaatgaactacat
ccggaatggaggctcatcatgacccttatctggagcttgagatcttat
gaattcccattaaattccaacacaattcttacagaccttgaaggctcaat
tctctattccatatggaaaactaaaaataaaaaatacaggatagctaaaa
caatcccatccaataaaagaacttctaaaaagaatcaccgtccctgatct
catgttgtactacataaccatagtaaaatgaaaactgcctagtattgact
gaaaaacagaaaagttgatcaacggaatacccctgaatgtgcacaaataa
accaatacaactatcaaccatcaacacttcatttttaacagagaaggcaa
aagagacattggaaaaaagaaagcatcttcatcaatgggtggctgtctaa
ctggatatctgcatgtagaagaaagctagttgctctatatttttcatcct
ccagtactctcaagtccaactgatcaaagacctcaaagtaaaaatggatg
cacaacacctaatacaagagaaagtaggggattagtctggaacacattgc
cccaggagataacttcctgaagagaaacccatagctcagaccatgagatc
aacaattaataatgggacttggtgaaactgaaaagcttctatacagcaaa
agagaacatcagtatgccaaaacgacagcctaaagattggaagaagatcc
tcactaacactacatctgacagaaggatgatatccaaaaactataaatat
aacaaaatattagttatccacaagccaaatcctccaatttaaaaatcaag
cactaaattacacagaatatttcaacagaggaatctctacaggctgagaa
gcacctaaataaatgttcaacattcccaatcatctaagaatgcaaattgc
aatgactcttgagatccatcttacacacttcagaatggctaagatcacac
ctcagtgacagctcatgttggggagtatacacaaggacacttcctcaatt
gtttctgagaagtgaaactggacaccactttgaaatcatcttgcagtata
ttcagaaatttgagatgcttctagtcaggcttaacctctcctaagagact
ttatacaaaagaccttgctcactaggtccaagcacggttcctcactgaga
acctgccttctaaacagcgactgatgtccattactgatcggatatcaggc
catgtgattatttcgtacagtcatgtttggtagaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_19455826_19456469
seq2: B6Ng01-080N01.b_457_1090

seq1  TTCTAATGCCCTTAAACCAACAGGCTAAAAAAGGAATAACAGTGTTAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATGCCCTTAAACCAACAGGCTAAAAAAGGAATAACAGTGTTAGGA  50

seq1  GGGGTGATAGATCCAGATTACCATGGGGAAATTGGATTACCTCTTCACAA  100
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GGGGTGATAGATCCAGATTACCATGGAGAAATTGGATTACCTCTTCACAA  100

seq1  TGGTGGTAAGCAAGATTATGTCTGGAGTGCAGGAGATCCCTTAGGGCGTC  150
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGGTGGTAAGCAAGATTATGTCTGGAGTGTAGGAGATCCCTTAGGGCGTC  150

seq1  TCTTAGTACTACCATGTCCTGTGATTAAAGTCAATGGGAAACTACAACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGTACTACCATGTCCTGTGATTAAAGTCAATGGGAAACTACAACAG  200

seq1  CCTAATCCAAGCAGGATGACAAAGGACGCAGACCCATCAGGAATGAAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATCCAAGCAGGATGACAAAGGACGCAGACCCATCAGGAATGAAGGT  250

seq1  ATGGGTCAATCCTCCAGGAAAAGAGCCAAGACCTGCTGAGGTGCTGGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTCAATCCTCCAGGAAAAGAGCCAAGACCTGCTGAGGTGCTGGCTG  300

seq1  AAGGTGAAGGAAATACAGAATGGGTAGTAGAGGAAGGTAGTTATAAATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGAAGGAAATACAGAATGGGTAGTAGAGGAAGGTAGTTATAAATAC  350

seq1  CAATTAAGGCCACGTAACCAGTTGCAGAAACGAGGATTATAAAGTAATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAAGGCCACGTAACCAGTTGCAGAAACGAGGATTATAAAGTAATAT  400

seq1  GAATGCCCATTGTAAATTTACTAATGCGTTTGCGATTGTACGAGGGATAG  450
      ||||||||||||||||||||| ||||||||||||||||||||||| ||||
seq2  GAATGCCCATTGTAAATTTACAAATGCGTTTGCGATTGTACGAGGAATAG  450

seq1  TTATATCATGTTAGGCGTATTTACAACCTTGTTATTGTTTCATGTGAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATCATGTTAGGCGTATTTACAACCTTGTTATTGTTTCATGTGAACA  500

seq1  TGAGATATTATTTGTGTCAAGTTGACAAGGGGTGGATTGTAGTGGCTATT  550
      |||||||||| ||||||||||||||| | |||||||||||||||||||||
seq2  TGAGATATTA-TTGTGTCAAGTTGAC-ACGGGTGGATTGTAGTGGCTATT  548

seq1  CCTGGTTGTCAACTTGACAATATTTGGAATGAACTACAATCCGGAATTGG  600
      |||||||||||||||||| |||||||||||||||||| |||||||||  |
seq2  CCTGGTTGTCAACTTGAC-ATATTTGGAATGAACTAC-ATCCGGAAT--G  594

seq1  AAGGCTCACCAGTGACCCTTATCTGGAGGCTTGGAGATCCTTAT  644
       ||||||| || ||||||||||||||| |||| ||||| |||||
seq2  GAGGCTCATCA-TGACCCTTATCTGGA-GCTT-GAGAT-CTTAT  634