BAC Information

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BAC

Clone NameB6Ng01-080P16
Chromosome7 (Build37)
Map Location 25,923,167 - 26,051,678
singlet/doubletdoublet
Overlap geneDedd2, Zfp526, Gsk3a, 9130221H12Rik, Erf
Upstream geneZfp235, Zfp114, Zfp111, Zfp109, Zfp108, Zfp93, LOC100043690, Zfp61, LOC100043691, Zfp94, 1700008P20Rik, Lypd5, Kcnn4, 1500002O20Rik, Irgc1, Plaur, Cadm4, Zfp428, Irgq, 2310033E01Rik, Xrcc1, Zfp575, Ethe1, LOC100043138, EG232970, Lypd3, LOC100043706, Tex101, Gm1096, BC049730, EG210155, Cd177, Ceacam10, EG545936, LOC100043712, Lypd4, Dmrtc2, Rps19, Cd79a, Arhgef1, EG232974, Rabac1, Atp1a3, Grik5, Zfp574, Pou2f2
Downstream geneCic, Pafah1b3, EG623131, Tmem145, Megf8, Cnfn, Lipe, BC024561, LOC434148, Ceacam1, Ceacam2, LOC100043722, EG632778, 2310004L02Rik, B3gnt8, Bckdha, Exosc5, A830041P22Rik, BC028440, Tgfb1, Ccdc97, Hnrpul1, Axl, LOC667950, Cyp2s1, LOC100043732, EG623475, Cyp2b10, LOC232993, EG667957, BC026762, Cyp2b13, EG668047, LOC623532, Cyp2b9, LOC667968
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080P16.bB6Ng01-080P16.g
ACCDH895962DH895963
length1,057917
definitionDH895962|Mus musculus domesticus DNA, BAC clone: B6Ng01-080P16, 5' end.DH895963|Mus musculus domesticus DNA, BAC clone: B6Ng01-080P16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,923,167 - 25,924,223)(26,051,031 - 26,051,678)
sequence
gaattcaagaccaagcagtgagttccaggacagctggagcaaaataatgg
agagagcttgtctcaaagacacccccccacacacacacacaggatagaac
gaacacttggaataaactggaggagggtatgctataagaaagctgctctg
atgaagcgcgtttacatagcaatctgattgacttcagactgtacagactt
cagaagacaaagcatgtgatgcggtatttccaggcagtgtgaacagagga
ggtggtggcccctaagtggtaaacagcatcgaggctggcatagctgagtg
ctgggagaggggaagaggctgtgctgggcaacgctgtggagaggcagcag
ggctgaagcactcaggccttgcggccatattagctttggatggcagagag
gtagctcagtggtagatgccagtgagtagctgaaccgtggctcagaagca
gagcgctcgctcaatacacacaaggctctgggctccatccccagagcata
caaagaagagaaagaaaaggggttaaattttaatccaggaagagtaggaa
gggttttaagtagaagcagtgtgattctatgaacagtgtgtgtgcatgtg
catatgtatgtgtggtgtgtccaagtgtgtgtgcttacacacgtgcgggg
gttggcactcctcaggagccatttgcctccgtcttttagatgaggtctct
cactggtatctaggtgccaatttgggtagactggttggccagcaagcccc
aggcatatcccgtctccacctcccagcactgaagcgtttgacatctgtgc
tgggaattgaactcaggtccctgagcttggcctgcaggcgctttacagag
acgacttctctcccagcccctctgtcagcattttttgagactttaaaaat
cattttatgtgcatgggtctttgccttgcctgtatgtatgtatgccgtgt
acatgcctggggattttgttgagctgttatgttggagccgggaattgacc
ttggttctttgcaagagcagccatgcgctctaacttctgagccaggtctc
agcccct
gaattcttgcccagagttcctgccctgacgccccttcagatgggcttgat
gaaatataagttgagataaacccctttctcattgagctgcttttagttat
tctgctttccttatgcttgcactatgctctgtaagagaatgttctgggat
atatggctgcttcacataggacatgcaaaaagcacccattatctatggca
cttacagtgaggcaacttctcgatatctacaggaagttcccaccgtgccg
cagaccctattgatcccttgtctgcatggaacgggtctctagtctcaggt
gggcaaggagtcagcgggaatggatggacagactcaacacaagggagtgt
ggatctgaatgtaatttgtcaaattgagcatcaaactttttatacagaag
aaaatagggaagatgggtgacaccagcaaggtacaaagaggttactggat
tcttacacaaaacagaggaatgcaaacacggaagaactggcaggaaccaa
ctgagataaaattctgttaacaactgggatcagaaacagctccacctaag
gtccacttaatcttagaagccaggggcttgtgcccttgccatagttccta
ctctagtctattgtatagtccaccttccccctaggccattgtaaatactt
gcgttttgggtgtaactcagctatctatagttctaagtatctactctggt
tcctctttaggtcactttagttctaagtatctacttctggttcctcgtta
tcttcctagataatggtcaatttccaggcagcggtggcacacgcctttaa
tcccagcacttgggaggcagaggcaggcaaatttctgagttcaaggccag
cctggtctacagagtgagttccaggacagccgaggctacacagagaaacc
ctgtctcaaaaccaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_25923167_25924223
seq2: B6Ng01-080P16.b_44_1100

seq1  GAATTCAAGACCAAGCAGTGAGTTCCAGGACAGCTGGAGCAAAATAATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGACCAAGCAGTGAGTTCCAGGACAGCTGGAGCAAAATAATGG  50

seq1  AGAGAGCTTGTCTCAAAGACACCCCCCCACACACACACACAGGATAGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGCTTGTCTCAAAGACACCCCCCCACACACACACACAGGATAGAAC  100

seq1  GAACACTTGGAATAAACTGGAGGAGGGTATGCTATAAGAAAGCTGCTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACTTGGAATAAACTGGAGGAGGGTATGCTATAAGAAAGCTGCTCTG  150

seq1  ATGAAGCGCGTTTACATAGCAATCTGATTGACTTCAGACTGTACAGACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGCGCGTTTACATAGCAATCTGATTGACTTCAGACTGTACAGACTT  200

seq1  CAGAAGACAAAGCATGTGATGCGGTATTTCCAGGCAGTGTGAACAGAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGACAAAGCATGTGATGCGGTATTTCCAGGCAGTGTGAACAGAGGA  250

seq1  GGTGGTGGCCCCTAAGTGGTAAACAGCATCGAGGCTGGCATAGCTGAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTGGCCCCTAAGTGGTAAACAGCATCGAGGCTGGCATAGCTGAGTG  300

seq1  CTGGGAGAGGGGAAGAGGCTGTGCTGGGCAACGCTGTGGAGAGGCAGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGAGGGGAAGAGGCTGTGCTGGGCAACGCTGTGGAGAGGCAGCAG  350

seq1  GGCTGAAGCACTCAGGCCTTGCGGCCATATTAGCTTTGGATGGCAGAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAAGCACTCAGGCCTTGCGGCCATATTAGCTTTGGATGGCAGAGAG  400

seq1  GTAGCTCAGTGGTAGATGCCAGTGAGTAGCTGAACCGTGGCTCAGAAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTCAGTGGTAGATGCCAGTGAGTAGCTGAACCGTGGCTCAGAAGCA  450

seq1  GAGCGCTCGCTCAATACACACAAGGCTCTGGGCTCCATCCCCAGAGCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGCTCGCTCAATACACACAAGGCTCTGGGCTCCATCCCCAGAGCATA  500

seq1  CAAAGAAGAGAAAGAAAAGGGGTTAAATTTTAATCCAGGAAGAGTAGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAGAGAAAGAAAAGGGGTTAAATTTTAATCCAGGAAGAGTAGGAA  550

seq1  GGGTTTTAAGTAGAAGCAGTGTGATTCTATGAACAGTGTGTGTGCATGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTTAAGTAGAAGCAGTGTGATTCTATGAACAGTGTGTGTGCATGTG  600

seq1  CATATGTATGTGTGGTGTGTCCAAGTGTGTGTGCTTACACACGTGCGGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTATGTGTGGTGTGTCCAAGTGTGTGTGCTTACACACGTGCGGGG  650

seq1  GTTGGCACTCCTCAGGAGCCATTTGCCTCCGTCTTTTAGATGAGGTCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCACTCCTCAGGAGCCATTTGCCTCCGTCTTTTAGATGAGGTCTCT  700

seq1  CACTGGTATCTAGGTGCCAATTTGGGTAGACTGGTTGGCCAGCAAGCCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGTATCTAGGTGCCAATTTGGGTAGACTGGTTGGCCAGCAAGCCCC  750

seq1  AGGCATATCCCGTCTCCACCTCCCAGCACTGAAGCGTTTGACATCTGTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATATCCCGTCTCCACCTCCCAGCACTGAAGCGTTTGACATCTGTGC  800

seq1  TGGGAATTGAACTCAGGTCCCTGAGCTTGGCCTGCAGGCGCTTTACAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAATTGAACTCAGGTCCCTGAGCTTGGCCTGCAGGCGCTTTACAGAG  850

seq1  ACGACTTCTCTCCCAGCCCCTCTGTCAGCA-TTTTTGAGACTTTTAAAAA  899
      |||||||||||||||||||||||||||||| |||||||||||||  ||||
seq2  ACGACTTCTCTCCCAGCCCCTCTGTCAGCATTTTTTGAGACTTT--AAAA  898

seq1  ATCATTTTATGTGCATGGGTCTTTGCC-TGCCTGTATGTATGTATGCCGT  948
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATCATTTTATGTGCATGGGTCTTTGCCTTGCCTGTATGTATGTATGCCGT  948

seq1  GTACATGCCTGGGGATTT--GTGAGCTGTTATGTGGGAGCCGGGAATTGA  996
      ||||||||||||||||||   ||||||||||||| |||||||||||||||
seq2  GTACATGCCTGGGGATTTTGTTGAGCTGTTATGTTGGAGCCGGGAATTGA  998

seq1  ACTTGGGTCCTATGCAAGAGCAGCCA-GCGCTCTTAACCTCTGAGCCAGG  1045
       ||| ||| || |||||||||||||| |||||| |||| |||||||||||
seq2  CCTT-GGTTCTTTGCAAGAGCAGCCATGCGCTC-TAACTTCTGAGCCAGG  1046

seq1  TCTTCAGCCCCT  1057
      || |||||||||
seq2  TC-TCAGCCCCT  1057

seq1: chr7_26051031_26051678
seq2: B6Ng01-080P16.g_69_716 (reverse)

seq1  GTATTTACAATGGCCTAGGGGGAAGGTGGACTATACAATAGACTAGAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTACAATGGCCTAGGGGGAAGGTGGACTATACAATAGACTAGAGTA  50

seq1  GGAACTATGGCAAGGGCACAAGCCCCTGGCTTCTAAGATTAAGTGGACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTATGGCAAGGGCACAAGCCCCTGGCTTCTAAGATTAAGTGGACCT  100

seq1  TAGGTGGAGCTGTTTCTGATCCCAGTTGTTAACAGAATTTTATCTCAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGGAGCTGTTTCTGATCCCAGTTGTTAACAGAATTTTATCTCAGTT  150

seq1  GGTTCCTGCCAGTTCTTCCGTGTTTGCATTCCTCTGTTTTGTGTAAGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCTGCCAGTTCTTCCGTGTTTGCATTCCTCTGTTTTGTGTAAGAAT  200

seq1  CCAGTAACCTCTTTGTACCTTGCTGGTGTCACCCATCTTCCCTATTTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTAACCTCTTTGTACCTTGCTGGTGTCACCCATCTTCCCTATTTTCT  250

seq1  TCTGTATAAAAAGTTTGATGCTCAATTTGACAAATTACATTCAGATCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATAAAAAGTTTGATGCTCAATTTGACAAATTACATTCAGATCCAC  300

seq1  ACTCCCTTGTGTTGAGTCTGTCCATCCATTCCCGCTGACTCCTTGCCCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCTTGTGTTGAGTCTGTCCATCCATTCCCGCTGACTCCTTGCCCAC  350

seq1  CTGAGACTAGAGACCCGTTCCATGCAGACAAGGGATCAATAGGGTCTGCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGACTAGAGACCCGTTCCATGCAGACAAGGGATCAATAGGGTCTGCG  400

seq1  GCACGGTGGGAACTTCCTGTAGATATCGAGAAGTTGCCTCACTGTAAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGGTGGGAACTTCCTGTAGATATCGAGAAGTTGCCTCACTGTAAGTG  450

seq1  CCATAGATAATGGGTGCTTTTTGCATGTCCTATGTGAAGCAGCCATATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGATAATGGGTGCTTTTTGCATGTCCTATGTGAAGCAGCCATATAT  500

seq1  CCCAGAACATTCTCTTACAGAGCATAGTGCAAGCATAAGGAAAGCAGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAACATTCTCTTACAGAGCATAGTGCAAGCATAAGGAAAGCAGAAT  550

seq1  AACTAAAAGCAGCTCAATGAGAAAGGGGTTTATCTCAACTTATATTTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAAAGCAGCTCAATGAGAAAGGGGTTTATCTCAACTTATATTTCAT  600

seq1  CAAGCCCATCTGAAGGGGCGTCAGGGCAGGAACTCTGGGCAAGAATTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCCATCTGAAGGGGCGTCAGGGCAGGAACTCTGGGCAAGAATTC  648