BAC Information

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BAC

Clone NameB6Ng01-080P18
Chromosome7 (Build37)
Map Location 49,969,056 - 50,111,118
singlet/doubletdoublet
Overlap geneEG546965, LOC546964, LOC100039706
Upstream geneEG628403, EG628422, Gprc2a-rs1, EG628444, EG434174, EG637913, EG434175, LOC100039556, EG637898, Gprc2a-rs2, LOC434177, Vmn2r-ps60, 4933421I07Rik, LOC628503, BC063263, LOC100039449, EG637776, C330019L16Rik, EG434179
Downstream geneEG637572, LOC100039507, EG435975, LOC668606, EG668668, LOC100039543, LOC668612, LOC385199, LOC100039589, EG668620, Zfp715, Siglecf, Siglecg, LOC100039610, Lim2, Nkg7, Cldnd2, Etfb, 2210412E05Rik, A230106M20Rik, 4931406B18Rik, LOC668630, LOC100039946, Cd33, BC043301, Zfp719, 4933405K07Rik, Ceacam18, Siglece, Atpbd3, Klk14, Klk13, Klk12, Klk11, Klk10, Klk9, Klk8, Klk7, Klk6, Klk5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080P18.bB6Ng01-080P18.g
ACCDH895966DH895967
length1,1881,101
definitionDH895966|Mus musculus domesticus DNA, BAC clone: B6Ng01-080P18, 5' end.DH895967|Mus musculus domesticus DNA, BAC clone: B6Ng01-080P18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,969,056 - 49,969,867)(50,110,008 - 50,111,118)
sequence
gaattctctagacagatacatcttgtaaaatcagaaaacaattattcctt
tccagcatacagtggcatagaatacatattcccattagaaataaaggaat
tataaatttagcaaattatatagtatatatatatatatatataattataa
agttagagaagattaaaccaaagcaagacagaaccccagcaggacaaaca
cccaatcctgtagttgtgtctcagattcatgcagcttcaggttcaaagga
cttagatggccctactccttcaacttctcataaatcttcctctttggtta
cttccactccctacacacagcggtccatgcagatgtctcatcactcagat
gggtcagcatcttgtggtctcaaattgcaactcaggcgtcaacctcacag
tttcatgcagggaagtcttacagtctcctcagtgcagctctgattctatc
aaacacagatggctggaataagtgagcaactaaaaccacacactaagaat
tcatgacattatcttattcatctttcctaattccagaaccagtacaagat
aagtgataatgccaagtttggcttccaagttgttatgatggaccctgcag
tgcttggaccacaattccaacactttttgcatagatgcttcctggaactg
tgaatcactttgtctactcattacattactccaagtcttagcaggataca
tttgggaaccatcatcggctttcaatggggagcaatggcgtactctttaa
tggtgataccatacttaaaactcctgtctgtgtcagcacttgactatcat
gcaaactccctagtgctgtttttctccatgaacatcagtctttgtttttt
ctattctctaccagttgcttttattccactcgagtggtggattcgtcact
ttttattcttttaagatttattcatttattatatgtaagcacactgtatc
tatctttagacactccagaagagggagtaagatcttggtagggatggctg
tgagccaccatgtggttgcttgggatttgaactcagaccttcagagagca
gtcgttgcttcttaacttcttgagcacggggtttataattcccacaatat
tactcatagagcatttatactgtcacattctgctctccactactgcttgc
ttctctctttccaacctggaagtccatgctctttggaa
gaattccactttctatttttttaagatttatttattatatataactacac
tgtagctgttttcagacacaccagaaaaaggcttcagatctcactacaga
tggttgtaagccatcgtgtggttcttgggatttgaactcaggacctctgg
aagaacagtcagtgatcttaaaagctgagctatctctccagcctgagaat
tgcaacttcaatgtctgtagaaagttgtgtttgaattttgaagggaattg
aattgaatttgtagagtggccatactgactatgttttttggttgtctatt
tttcaaacctggtttttctgggtgatgagcttgtggtcctggaacttgtc
ccatctatcaggctggccttgaactcagagaattctgcctacctctgcct
ctgcctcctttcctattctttaagaatttcattcctaaccaggcagtgat
ggcacacacgcctttaatcccaccacttgggaggcagaggcaggcagatt
tttgaattcgaagccacctggtctacaaaatgagttccaggatagccagg
tctatacagagaaacactttctcagaaaaaaaaaaaaagaatttgattcc
ttacttaaactgctttaatattagtttctcattagaataatactttctga
atctttggcttcccttatgcttttaattaaggattgcattgtacacctca
tcctgcctgtgtgttccagtgacttgaaggcattcctgcaactctttcag
gcttgacccttactaatcagtgagatggaaaagagaccagtgtgtgaggg
tcctctgacttccataccttttatgggcatttaaaatgaaatgggacttg
agacagaattgacttcaccgaccaactctgatgctgctgtattcacagca
cagagagggatgggggacaaggagggggagctttcatgtttccacagtat
ttggttatcattagcagtgagtagtcagatcatcaaatttgatatcattt
aaagtcctgactggcaaatttgtcagtttcatgacccaagccaatcaaag
cttctgataaagactgactcaattttagaaccaatctgtagtcagaagtt
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_49969056_49969867
seq2: B6Ng01-080P18.b_425_1234

seq1  AACTCAGGCGTCAACCTCACAGTTTCATGCAGGGAAGTCTTACAGTCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGGCGTCAACCTCACAGTTTCATGCAGGGAAGTCTTACAGTCTCC  50

seq1  TCAGTGCAGCTCTGATTCTATCAAACACAGATGGCTGGAATAAGTGAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGCAGCTCTGATTCTATCAAACACAGATGGCTGGAATAAGTGAGCA  100

seq1  ACTAAAACCACACACTAAGAATTCATGACATTATCTTATTCATCTTTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAACCACACACTAAGAATTCATGACATTATCTTATTCATCTTTCCT  150

seq1  AATTCCAGAACCAGTACAAGATAAGTGATAATGCCAAGTTTGGCTTCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCAGAACCAGTACAAGATAAGTGATAATGCCAAGTTTGGCTTCCAA  200

seq1  GTTGTTATGATGGACCCTGCAGTGCTTGGACCACAATTCCAACACTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTATGATGGACCCTGCAGTGCTTGGACCACAATTCCAACACTTTTT  250

seq1  GCATAGATGCTTCCTGGAACTGTGAATCACTTTGTCTACTCATTACATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGATGCTTCCTGGAACTGTGAATCACTTTGTCTACTCATTACATTA  300

seq1  CTCCAAGTCTTAGCAGGATACATTTGGGAACCATCATCGGCTTTCAATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAGTCTTAGCAGGATACATTTGGGAACCATCATCGGCTTTCAATGG  350

seq1  GGAGCAATGGCGTACTCTTTAATGGTGATACCATACTTAAAACTCCTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAATGGCGTACTCTTTAATGGTGATACCATACTTAAAACTCCTGTC  400

seq1  TGTGTCAGCACTTGACTATCATGCAAACTCCCTAGTGCTGTTTTTCTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCAGCACTTGACTATCATGCAAACTCCCTAGTGCTGTTTTTCTCCA  450

seq1  TGAACATCAGTCTTTGTTTTTTCTATTCTCTACCAGTTGCTTTTATTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACATCAGTCTTTGTTTTTTCTATTCTCTACCAGTTGCTTTTATTCCA  500

seq1  CTCGAGTGGTGGATTCGTCACTTTTTATTCTTTTAAGATTTATTCATTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAGTGGTGGATTCGTCACTTTTTATTCTTTTAAGATTTATTCATTTA  550

seq1  TTATATGTAAGCACACTGTATCTATCTTTAGACACTCCAGAAGAGGGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATGTAAGCACACTGTATCTATCTTTAGACACTCCAGAAGAGGGAGT  600

seq1  AAGATCTTGGTAGGGATGGCTGTGAGCCACCATGTGGTTGC-TGGGATTT  649
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AAGATCTTGGTAGGGATGGCTGTGAGCCACCATGTGGTTGCTTGGGATTT  650

seq1  GAACTCAGGACCTTCAGAAGAGCAGTCGGTGC-TCTTAACTTC-TGAGCA  697
      ||||||| ||||||||| |||||||||| ||| |||||||||| ||||||
seq2  GAACTCA-GACCTTCAG-AGAGCAGTCGTTGCTTCTTAACTTCTTGAGCA  698

seq1  CGGGGTTTATAATTCCCACAATATAACTCATAGAGGCATCTATACTGTCA  747
      |||||||||||||||||||||||| ||||||||| |||| ||||||||||
seq2  CGGGGTTTATAATTCCCACAATATTACTCATAGA-GCATTTATACTGTCA  747

seq1  CATTTCTGGCTCTCCACTTACTGC-TGC-TCTCTC-TTCCACACTGAGAG  794
      || |||| ||||||||| |||||| ||| |||||| |||||  |||  ||
seq2  CA-TTCT-GCTCTCCAC-TACTGCTTGCTTCTCTCTTTCCAACCTGGAAG  794

seq1  GCTCCATGCTCTTTGGAA  812
        ||||||||||||||||
seq2  --TCCATGCTCTTTGGAA  810

seq1: chr7_50110008_50111118
seq2: B6Ng01-080P18.g_71_1171 (reverse)

seq1  TAACTTCCTGAAACTACAGAATTTTGGTTTCTAAAAATGAGTTCAGTTCT  50
      |||||| |||  ||||||||   |||| |||||||| |||| |||| |||
seq2  TAACTT-CTG--ACTACAGA---TTGG-TTCTAAAATTGAG-TCAG-TCT  41

seq1  TTATCCAGAGCTTTGATTGCCTGGGTTCATGAAACTGACAAATTTGCCAG  100
      |||||   ||||||||||| || || ||||||||||||||||||||||||
seq2  TTATCAGAAGCTTTGATTGGCTTGGGTCATGAAACTGACAAATTTGCCAG  91

seq1  TCAGGACTTTTAATGATTATCAAAATTTGATGATCTGACTACTCACTGCT  150
      |||||||||| ||||| |||| ||||||||||||||||||||||||||||
seq2  TCAGGACTTTAAATGA-TATC-AAATTTGATGATCTGACTACTCACTGCT  139

seq1  AATGATAACCAAATACTGT-GAAACATGAAAGCT-CCCCTCCTTGTCCCC  198
      ||||||||||||||||||| |||||||||||||| ||||||||||| |||
seq2  AATGATAACCAAATACTGTGGAAACATGAAAGCTCCCCCTCCTTGT-CCC  188

seq1  CCATCCCTCTCTGTGCTGTGAATACAGCAGCATCAGAGTTGGTCGGTGAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCCTCTCTGTGCTGTGAATACAGCAGCATCAGAGTTGGTCGGTGAA  238

seq1  GTCAATTCTGTCTCAAGTCCCATTTCATTTTAAATGCCCATAAAAGGTAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATTCTGTCTCAAGTCCCATTTCATTTTAAATGCCCATAAAAGGTAT  288

seq1  GGAAGTCAGAGGACCCTCACACACTGGTCTCTTTTCCATCTCACTGATTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTCAGAGGACCCTCACACACTGGTCTCTTTTCCATCTCACTGATTA  338

seq1  GTAAGGGTCAAGCCTGAAAGAGTTGCAGGAATGCCTTCAAGTCACTGGAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGGTCAAGCCTGAAAGAGTTGCAGGAATGCCTTCAAGTCACTGGAA  388

seq1  CACACAGGCAGGATGAGGTGTACAATGCAATCCTTAATTAAAAGCATAAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGGCAGGATGAGGTGTACAATGCAATCCTTAATTAAAAGCATAAG  438

seq1  GGAAGCCAAAGATTCAGAAAGTATTATTCTAATGAGAAACTAATATTAAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCCAAAGATTCAGAAAGTATTATTCTAATGAGAAACTAATATTAAA  488

seq1  GCAGTTTAAGTAAGGAATCAAATTCTTTTTTTTTTTTTCTGAGAAAGTGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTTAAGTAAGGAATCAAATTCTTTTTTTTTTTTTCTGAGAAAGTGT  538

seq1  TTCTCTGTATAGACCTGGCTATCCTGGAACTCATTTTGTAGACCAGGTGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGTATAGACCTGGCTATCCTGGAACTCATTTTGTAGACCAGGTGG  588

seq1  CTTCGAATTCAAAAATCTGCCTGCCTCTGCCTCCCAAGTGGTGGGATTAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGAATTCAAAAATCTGCCTGCCTCTGCCTCCCAAGTGGTGGGATTAA  638

seq1  AGGCGTGTGTGCCATCACTGCCTGGTTAGGAATGAAATTCTTAAAGAATA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGTGTGTGCCATCACTGCCTGGTTAGGAATGAAATTCTTAAAGAATA  688

seq1  GGAAAGGAGGCAGAGGCAGAGGTAGGCAGAATTCTCTGAGTTCAAGGCCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGAGGCAGAGGCAGAGGTAGGCAGAATTCTCTGAGTTCAAGGCCA  738

seq1  GCCTGATAGATGGGACAAGTTCCAGGACCACAAGCTCATCACCCAGAAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGATAGATGGGACAAGTTCCAGGACCACAAGCTCATCACCCAGAAAA  788

seq1  ACCAGGTTTGAAAAATAGACAACCAAAAAACATAGTCAGTATGGCCACTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGTTTGAAAAATAGACAACCAAAAAACATAGTCAGTATGGCCACTC  838

seq1  TACAAATTCAATTCAATTCCCTTCAAAATTCAAACACAACTTTCTACAGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATTCAATTCAATTCCCTTCAAAATTCAAACACAACTTTCTACAGA  888

seq1  CATTGAAGTTGCAATTCTCAGGCTGGAGAGATAGCTCAGCTTTTAAGATC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAAGTTGCAATTCTCAGGCTGGAGAGATAGCTCAGCTTTTAAGATC  938

seq1  ACTGACTGTTCTTCCAGAGGTCCTGAGTTCAAATCCCAAGAACCACACGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACTGTTCTTCCAGAGGTCCTGAGTTCAAATCCCAAGAACCACACGA  988

seq1  TGGCTTACAACCATCTGTAGTGAGATCTGAAGCCTTTTTCTGGTGTGTCT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTACAACCATCTGTAGTGAGATCTGAAGCCTTTTTCTGGTGTGTCT  1038

seq1  GAAAACAGCTACAGTGTAGTTATATATAATAAATAAATCTTAAAAAAATA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAGCTACAGTGTAGTTATATATAATAAATAAATCTTAAAAAAATA  1088

seq1  GAAAGTGGAATTC  1111
      |||||||||||||
seq2  GAAAGTGGAATTC  1101