BAC Information

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BAC

Clone NameB6Ng01-081E16
Chromosome7 (Build37)
Map Location 30,835,045 - 30,979,087
singlet/doubletdoublet
Overlap geneZfp14, LOC100043798, Zfp82, Zfp566, Zfp260, Zfp382, Zfp146, EG330503, Cox7a1, Capns1
Upstream geneRyr1, Rasgrp4, 1110006G06Rik, Spred3, Ggn, Psmd8, A230107C01Rik, Kcnk6, Yif1b, Spint2, Ppp1r14a, Neud4, Sipa1l3, LOC100043791, 4932431P20Rik, 4930432E11Rik, 1700067C01Rik, Zfp84, LOC100043794, Zfp30, EG625349, 6330581L23Rik, BC027344, Zfp420, Zfp27, Zfp74, LOC625437, LOC100043796, Zfp568
Downstream geneTbcb, Polr2i, Ovol3, Wdr62, EG668354, 1700020L13Rik, Clip3, Alkbh6, AI428936, 0610010E21Rik, Lrfn3, Tyrobp, Hcst, AY078069, Aplp1, Kirrel2, Nphs1, LOC100034728, Prodh2, Gm1082, Snx26, BC053749, Hspb6, 1810054G18Rik, Psenen, U2af1l4, Tmem149, Wbp7, Zbtb32, Upk1a, Cox6b1, Etv2, 3100004P22Rik, 2310022K01Rik, 4930479M11Rik, 2200002J24Rik, EG233075, Atp4a, Tmem147, Gapdhs, Sbsn, Dmkn, Krtdap, Ffar2, Ffar3, Ffar1, Cd22, Mag, Hamp2, Usf2-ps1, Hamp1, Usf2, LOC100043823, Lsr, Tmem162, Fxyd5, Fxyd7, Fxyd1, Lgi4, Fxyd3, Hpn, Scn1b, Gramd1a, LOC672598
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081E16.bB6Ng01-081E16.g
ACCDH896188DH896189
length1,132650
definitionDH896188|Mus musculus domesticus DNA, BAC clone: B6Ng01-081E16, 5' end.DH896189|Mus musculus domesticus DNA, BAC clone: B6Ng01-081E16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,835,045 - 30,836,174)(30,978,441 - 30,979,087)
sequence
gaattcctggtcagtataggtacaaattgtttaaaacaagaacaaaacgt
gctattctggtaagaagcgtggtttagcaaaggaatcttccacagtaatt
aaaaacgaactagcaaagcaggcttcgtggataagaaagctgcagcctgg
aatgcagagatggatcagcgggttacactctcagcacctacgtgactgct
gtaactccagttccagagaatccgatgccctcttcagggctcctcaggcg
cagtcacactcagtggtgcacagaaagaaaagcagacagaaacactcaca
tacgtaaaaaacgaacatgttaaaaatttaaaacctgtgaggctggaaac
agctgtactgctaggagcagtggctgctctagcagaggatgcaagtgtga
ttccccgtactcacatggtgtttcacgaccgtctataactccagttcctg
ggaatcagacaccttctcctggcttctgctggtatgtgtatacacacaaa
tacacacacacacacacacacacacacacacataaaaaagaaaaaataca
aaagacatttgtaaccacacaaagagggcctggacccgcatttaatcaga
gacataatctctgagtgatgcttactatcagtctgcatgaatctgtctcc
tctaccctgaccaagataacaccaaaccgctgcttctttccaagctaact
tcattttcactttcacagtaatgaggagtaaatgtccccatgcctggaaa
aacaaggagtacacttcataggacaacgagaaagaagaaagttaggctat
ttttttttccgcagtaatgttgggtctctatgtatgcaacaacaatcgtt
tcctgcttttattccctcgccttccctaaaatgaacaagtctggggaaaa
ggtcaaaccgggaaggtgcgggcttggtagcctggggacacacccctcgc
gaccagcccttccacacacatacctactggaaatggagcgccgcggatgg
agaggacactgggccgccaccggaggggcagttttgacaggcgacggcac
ccggggctgcctggcgggggaggaggcggtacaagcagccctggggtggg
cagctgcgcctgtcttttttggtcggagggcc
ttcttgaagggcggcggtggcggtgggggaggcgggggtctgggcggggg
cctggggaatgtgctcggaggcctgatcagcggagctgctggcggcggcg
gcggtggcggtggaggcatgggactgggaggaggtggcggaggcggtgga
actgccatgcgcatcctgggcggagtcattagcgccatcaggtaaggcgg
ggcctgaaggggcggggcgggccaaataataaagactcacttagagtccg
acctgagaattcttaattagtctgggctgatccataccggaaaactggcc
ctaaggggattctagcgaggctggtgtcactttttagtaccaggattagt
aaacctgcttctgtgggtcaacaaataggatgcagtttcttggggatagg
ggctcttctgtgtttggggaaggtgcaattctataggattgtatccagcc
ttcactgggggcgcagccagtggatctaaggctgtccatggcttaagatt
tgagcgaggtggagcttgctgttttaggagagatcagagtccccaaagaa
gaaatggtccagagaaggttgtgtggggtctggagctgattggtttagtg
ggtaaaaattcctttgctggggttagaaacaggttggctggcatctattt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_30835045_30836174
seq2: B6Ng01-081E16.b_43_1174

seq1  GAATTCCTGGTCAGTATAGGTACAAATTGTTTAAAACAAGAACAAAACGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGTCAGTATAGGTACAAATTGTTTAAAACAAGAACAAAACGT  50

seq1  GCTATTCTGGTAAGAAGCGTGGTTTAGCAAAGGAATCTTCCACAGTAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTCTGGTAAGAAGCGTGGTTTAGCAAAGGAATCTTCCACAGTAATT  100

seq1  AAAAACGAACTAGCAAAGCAGGCTTCGTGGATAAGAAAGCTGCAGCCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACGAACTAGCAAAGCAGGCTTCGTGGATAAGAAAGCTGCAGCCTGG  150

seq1  AATGCAGAGATGGATCAGCGGGTTACACTCTCAGCACCTACGTGACTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAGAGATGGATCAGCGGGTTACACTCTCAGCACCTACGTGACTGCT  200

seq1  GTAACTCCAGTTCCAGAGAATCCGATGCCCTCTTCAGGGCTCCTCAGGCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTCCAGTTCCAGAGAATCCGATGCCCTCTTCAGGGCTCCTCAGGCG  250

seq1  CAGTCACACTCAGTGGTGCACAGAAAGAAAAGCAGACAGAAACACTCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCACACTCAGTGGTGCACAGAAAGAAAAGCAGACAGAAACACTCACA  300

seq1  TACGTAAAAAACGAACATGTTAAAAATTTAAAACCTGTGAGGCTGGAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTAAAAAACGAACATGTTAAAAATTTAAAACCTGTGAGGCTGGAAAC  350

seq1  AGCTGTACTGCTAGGAGCAGTGGCTGCTCTAGCAGAGGATGCAAGTGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTACTGCTAGGAGCAGTGGCTGCTCTAGCAGAGGATGCAAGTGTGA  400

seq1  TTCCCCGTACTCACATGGTGTTTCACGACCGTCTATAACTCCAGTTCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCGTACTCACATGGTGTTTCACGACCGTCTATAACTCCAGTTCCTG  450

seq1  GGAATCAGACACCTTCTCCTGGCTTCTGCTGGTATGTGTATACACACAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCAGACACCTTCTCCTGGCTTCTGCTGGTATGTGTATACACACAAA  500

seq1  TACACACACACACACACACACACACACACACATAAAAAAGAAAAAATACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACACACACACACACACACACACACACATAAAAAAGAAAAAATACA  550

seq1  AAAGACATTTGTAACCACACAAAGAGGGCCTGGACCCGCATTTAATCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACATTTGTAACCACACAAAGAGGGCCTGGACCCGCATTTAATCAGA  600

seq1  GACATAATCTCTGAGTGATGCTTACTATCAGTCTGCATGAATCTGTCTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATAATCTCTGAGTGATGCTTACTATCAGTCTGCATGAATCTGTCTCC  650

seq1  TCTACCCTGACCAAGATAACACCAAACCGCTGCTTCTTTCCAAGCTAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCCTGACCAAGATAACACCAAACCGCTGCTTCTTTCCAAGCTAACT  700

seq1  TCATTTTCACTTTCACAGTAATGAGGAGTAAATGTCCCCATGCCTGGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTCACTTTCACAGTAATGAGGAGTAAATGTCCCCATGCCTGGAAA  750

seq1  AACAAGGAGTACACTTCATAGGACAACGAGAAAGAAGAAAGTTAGGCTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGGAGTACACTTCATAGGACAACGAGAAAGAAGAAAGTTAGGCTAT  800

seq1  TTTTTTTTCCGCAGTAATGTTGGGTCTCTATGTATGCAACAACAATCGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCCGCAGTAATGTTGGGTCTCTATGTATGCAACAACAATCGTT  850

seq1  TCCTGCTTTTATTCCCTCGCCTTCCCTAAAATGAACAAGTCTGGGGAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTTTTATTCCCTCGCCTTCCCTAAAATGAACAAGTCTGGGGAAAA  900

seq1  GGTCAAACCGGGAAGGTGCGGGCTTGGTAGCCTGGGGACACACCCCTCGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAAACCGGGAAGGTGCGGGCTTGGTAGCCTGGGGACACACCCCTCGC  950

seq1  GACCAGCCCTTCCACACACATAACCTACTGGAAATGGAGCGCCGCGGATG  1000
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GACCAGCCCTTCCACACACAT-ACCTACTGGAAATGGAGCGCCGCGGATG  999

seq1  GAGAGGACACT-GGCCGCCACCGGAGGGGCAGGTTTGACAGGCGACGGCC  1049
      ||||||||||| |||||||||||||||||||| |||||||||||||||| 
seq2  GAGAGGACACTGGGCCGCCACCGGAGGGGCAGTTTTGACAGGCGACGGCA  1049

seq1  ACCGGGGCTGCCTGGCGGGGAGGGAGCGCGTACAAAGCAGCCCTGCGGT-  1098
       |||||||||||||||||||  ||||   |||| ||||||||||| ||| 
seq2  CCCGGGGCTGCCTGGCGGGGGAGGAGGCGGTAC-AAGCAGCCCTGGGGTG  1098

seq1  GGCAGCTGCG-CTGTC-TTTTTGTACGGAGGGCC  1130
      |||||||||| ||||| ||||||  |||||||||
seq2  GGCAGCTGCGCCTGTCTTTTTTGGTCGGAGGGCC  1132

seq1: chr7_30978441_30979087
seq2: B6Ng01-081E16.g_78_727 (reverse)

seq1  ATATAGGTGCCAGCC-ACCTG-TTCTAACCCCAGCAAAGG-ATTTTTACC  47
      | |||| |||||||| ||||| |||||||||||||||||| |||||||||
seq2  AAATAGATGCCAGCCAACCTGTTTCTAACCCCAGCAAAGGAATTTTTACC  50

seq1  CACTAAACCAATCAGCTCCAGACCCCACACAACCTTCTCTGGACCATTTC  97
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAACCAATCAGCTCCAGACCCCACACAACCTTCTCTGGACCATTTC  100

seq1  TTCTTTGGGGACTCTGATCTCTCCTAAAACAGCAAGCTCCACCTCGCTCA  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGGGGACTCTGATCTCTCCTAAAACAGCAAGCTCCACCTCGCTCA  150

seq1  AATCTTAAGCCATGGACAGCCTTAGATCCACTGGCTGCGCCCCCAGTGAA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTAAGCCATGGACAGCCTTAGATCCACTGGCTGCGCCCCCAGTGAA  200

seq1  GGCTGGATACAATCCTATAGAATTGCACCTTCCCCAAACACAGAAGAGCC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGATACAATCCTATAGAATTGCACCTTCCCCAAACACAGAAGAGCC  250

seq1  CCTATCCCCAAGAAACTGCATCCTATTTGTTGACCCACAGAAGCAGGTTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCCCCAAGAAACTGCATCCTATTTGTTGACCCACAGAAGCAGGTTT  300

seq1  ACTAATCCTGGTACTAAAAAGTGACACCAGCCTCGCTAGAATCCCCTTAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATCCTGGTACTAAAAAGTGACACCAGCCTCGCTAGAATCCCCTTAG  350

seq1  GGCCAGTTTTCCGGTATGGATCAGCCCAGACTAATTAAGAATTCTCAGGT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGTTTTCCGGTATGGATCAGCCCAGACTAATTAAGAATTCTCAGGT  400

seq1  CGGACTCTAAGTGAGTCTTTATTATTTGGCCCGCCCCGCCCCTTCAGGCC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGACTCTAAGTGAGTCTTTATTATTTGGCCCGCCCCGCCCCTTCAGGCC  450

seq1  CCGCCTTACCTGATGGCGCTAATGACTCCGCCCAGGATGCGCATGGCAGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCTTACCTGATGGCGCTAATGACTCCGCCCAGGATGCGCATGGCAGT  500

seq1  TCCACCGCCTCCGCCACCTCCTCCCAGTCCCATGCCTCCACCGCCACCGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCGCCTCCGCCACCTCCTCCCAGTCCCATGCCTCCACCGCCACCGC  550

seq1  CGCCGCCGCCAGCAGCTCCGCTGATCAGGCCTCCGAGCACATTCCCCAGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCGCCGCCAGCAGCTCCGCTGATCAGGCCTCCGAGCACATTCCCCAGG  600

seq1  CCCCCGCCCAGACCCCCGCCTCCCCCACCGCCACCGCCGCCCTTCAAGAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCGCCCAGACCCCCGCCTCCCCCACCGCCACCGCCGCCCTTCAAGAA  650