BAC Information

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BAC

Clone NameB6Ng01-081E23
Chromosome7 (Build37)
Map Location 20,327,429 - 20,511,615
singlet/doubletdoublet
Overlap genePvrl2, Bcam, Cblc, Bcl3, Ceacam16, Ceacam19, Pvr
Upstream geneLOC666863, Sycp1-ps1, Psg19, Psg17, Mill2, Pglyrp1, C530028I08Rik, Nova2, Nanos2, P42pop, Irf2bp1, Foxa3, Sympk, Rshl1, Dmwd, Dmpk, Six5, EG243866, Fbxo46, Qpctl, Snrpd2, Gipr, Eml2, Gpr4, Opa3, Vasp, C79127, Rtn2, Fosb, D830036C21Rik, Ercc1, Cd3eap, Ppp1r13l, Ercc2, Klc3, Ckm, Mark4, 4933417E01Rik, Bloc1s3, Trappc6a, Nkpd1, BC024868, Gemin7, Zfp296, Sfrs16, Relb, Clptm1, Apoc2, Apoc4, Apoc1, Apoe, Tomm40
Downstream gene2210010C17Rik, EG243872, Ceacam20, Nlrp9b, EG667040, EG667067, LOC620401, V1rd21, EG620537, LOC100043519, EG620574, LOC100043523, EG545926, LOC100043528, LOC100042964, LOC100042966, LOC100043533, EG435949, LOC100043536, LOC100042968, LOC100042971, EG667129, EG667135, EG435946, LOC100042976, LOC100043550, LOC667156, LOC673977, LOC667166, LOC100042980, EG381936, LOC100043559, LOC667311, LOC100043561, LOC667302, EG667292, LOC100043566
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081E23.bB6Ng01-081E23.g
ACCDH896202DH896203
length721890
definitionDH896202|Mus musculus domesticus DNA, BAC clone: B6Ng01-081E23, 5' end.DH896203|Mus musculus domesticus DNA, BAC clone: B6Ng01-081E23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,327,429 - 20,328,145)(20,510,725 - 20,511,615)
sequence
gaattcacatcaatcctcctgtctcaccatccagaagagctgggattaca
cagctttgcaaatgtgaattagaacaggtcttggagctaggcaaaaggac
atcaaggacagaaaaatgggcttgaaaaggtgtcggggaggggttggtga
gatggcgcagcgggtaaaggtgattgcagccaagaatgataaccggattt
taatctctgagatccgagtagtggatagggagaacagactcctgaacatt
gtcctcttgtattaacacacacacacacacacacacacacacacacacac
acacacacaggaggtatcagtgaaccaggctcagcagccttcagtcataa
ttccaaaactaaggagacagaggcataaggatgtttggggccagagaatt
ccaggttaaccttcgttatccagggacgcccttcataaatgaaaacatac
aaatgacaagaatctcacagccccaagacctccagactaagtctctaatt
ctgaatacaagaatggatgttcagagtgagatgaactgtggcttatgttt
gtttgttttatttaattactgcatttacatatgtgtggggcaggggtggg
ggtgccaatgcacagggtgtggggttggctcttttcttttccactgtgtg
ggtcttggagacagaactcaggctgtcaaggtttggcagcaagcaccttc
acccgctggggccgtctccct
gaattcactatgtggacaaggttgatctggaactcatagggatccctctg
cctctacctcccaaatgctggaattaaagacttgcaccaccaccacaagg
ccggaaaccatttttgttggaacatacaagcagaatccatgatcccaggc
caggccactcacagccagccccagaatggaatctctattctctatgaggc
cagtgttgtggttttcactgataataatggcgtccgatggcagactccaa
gaatgacccattttcagtgaaggagtctcccaaatcgacgccaggtatgg
ctcctgtccagacattgggcaatgtcttgttgggtgggtgtcagtgaatc
acttctgaactgcagacctgctttgcattggtggacagacaactgctttc
ctctaagctggttgtttggctattcttttttatttttaatctagttgtat
gcattagtgttgcagatagtgtggaggtgctcatggaggctggaaggagg
tattggatccccaagagctggattgataggcagttttgagctggccaatg
agaatgctgggaactgaaaccctctagaagaggaaaagactctctctcca
gcccctggcttcctactttgtttaaaaatacttcctaccatttggccttt
tattcctccatctctttgtttatcaaaacctccattctaattctgggcat
ccagccataaagacagatggatgggttgaggcactttctgcctggagggg
tggtacagcgggtaaaggtgcttgcaaccaagtctgatgacctgggtttg
attcccagggcccacctggtgggaaggaaggaccaactctagcaaattaa
ctgtcagtccaaagaaattgtttcccacatcctgacaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_20327429_20328145
seq2: B6Ng01-081E23.b_38_758

seq1  GAATTCACATCAATCCTCCTGTCTCACCATCCAGAAGAGCTGGGATTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATCAATCCTCCTGTCTCACCATCCAGAAGAGCTGGGATTACA  50

seq1  CAGCTTTGCAAATGTGAATTAGAACAGGTCTTGGAGCTAGGCAAAAGGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTTGCAAATGTGAATTAGAACAGGTCTTGGAGCTAGGCAAAAGGAC  100

seq1  ATCAAGGACAGAAAAATGGGCTTGAAAAGGTGTCGGGGAGGGGTTGGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGGACAGAAAAATGGGCTTGAAAAGGTGTCGGGGAGGGGTTGGTGA  150

seq1  GATGGCGCAGCGGGTAAAGGTGATTGCAGCCAAGAATGATAACCGGATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCGCAGCGGGTAAAGGTGATTGCAGCCAAGAATGATAACCGGATTT  200

seq1  TAATCTCTGAGATCCGAGTAGTGGATAGGGAGAACAGACTCCTGAACATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTCTGAGATCCGAGTAGTGGATAGGGAGAACAGACTCCTGAACATT  250

seq1  GTCCTCTTGTATTAACACACACACACACACACACACACACACACACACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCTTGTATTAACACACACACACACACACACACACACACACACACAC  300

seq1  ACACACACAGGAGGTATCAGTGAACCAGGCTCAGCAGCCTTCAGTCATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACAGGAGGTATCAGTGAACCAGGCTCAGCAGCCTTCAGTCATAA  350

seq1  TTCCAAAACTAAGGAGACAGAGGCATAAGGATGTTTGGGGCCAGAGAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAAACTAAGGAGACAGAGGCATAAGGATGTTTGGGGCCAGAGAATT  400

seq1  CCAGGTTAACCTTCGTTATCCAGGGACGCCCTTCATAAATGAAAACATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTTAACCTTCGTTATCCAGGGACGCCCTTCATAAATGAAAACATAC  450

seq1  AAATGACAAGAATCTCACAGCCCCAAGACCTCCAGACTAAGTCTCTAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACAAGAATCTCACAGCCCCAAGACCTCCAGACTAAGTCTCTAATT  500

seq1  CTGAATACAAGAATGGATGTTCAGAGTGAGATGAACTGTGGCTTATGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATACAAGAATGGATGTTCAGAGTGAGATGAACTGTGGCTTATGTTT  550

seq1  GTTTGTTTTATTTAATTACTGCATTTACATATGTGTGGGGCAGGGGTGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTTATTTAATTACTGCATTTACATATGTGTGGGGCAGGGGTGGG  600

seq1  GGTGCCAATGCACA-GGTGTGGGGTTGGCTCTTTTC-TTTCCACTGTGTG  648
      |||||||||||||| ||||||||||||||||||||| |||||||||||||
seq2  GGTGCCAATGCACAGGGTGTGGGGTTGGCTCTTTTCTTTTCCACTGTGTG  650

seq1  GGTCTTGGAGACAGAACTCAGGCTGTCAA-GTTTGGCAGCAAGCACCTTC  697
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GGTCTTGGAGACAGAACTCAGGCTGTCAAGGTTTGGCAGCAAGCACCTTC  700

seq1  ACCCGCT-GGGCCGTCTCCCT  717
      ||||||| |||||||||||||
seq2  ACCCGCTGGGGCCGTCTCCCT  721

seq1: chr7_20510725_20511615
seq2: B6Ng01-081E23.g_68_957 (reverse)

seq1  AATTGTCAGGATGTGGGAAAACAATTTTCTTTGGACTGACAGTTAATTTG  50
      ||||||||||||||||| |||||| |||||||||||||||||||||||||
seq2  AATTGTCAGGATGTGGG-AAACAA-TTTCTTTGGACTGACAGTTAATTTG  48

seq1  CTAGAGTTGGTCCTTCCTTCCCACCAGGTGGGCCCTGGGAATCAAACCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGTTGGTCCTTCCTTCCCACCAGGTGGGCCCTGGGAATCAAACCCA  98

seq1  GGTCATCAGACTTGGTTGCAAGCACCTTTACCCGCTGTACCACCCCTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATCAGACTTGGTTGCAAGCACCTTTACCCGCTGTACCACCCCTCCA  148

seq1  GGCAGAAAGTGCCTCAAACCATCCATCTGTCTTTATGGCTGGATGCCCAG  200
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GGCAGAAAGTGCCTCAACCCATCCATCTGTCTTTATGGCTGGATGCCCAG  198

seq1  AATTAGAATGGAGGTTTTGATAAAC-AAGAGATGGAGGAATAAAAGGCCA  249
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AATTAGAATGGAGGTTTTGATAAACAAAGAGATGGAGGAATAAAAGGCCA  248

seq1  AATGGTAGGAAGTATTTTTAAACAAAGTAGGAAGCCAGGGGCTGGAGAGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTAGGAAGTATTTTTAAACAAAGTAGGAAGCCAGGGGCTGGAGAGA  298

seq1  GAGTCTTTTCCTCTTCTAGAGGGTTTCAGTTCCCAGCATTCTCATTGGCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTTTTCCTCTTCTAGAGGGTTTCAGTTCCCAGCATTCTCATTGGCC  348

seq1  AGCTCAAAACTGCCTATCAATCCAGCTCTTGGGGATCCAATACCTCCTTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAAAACTGCCTATCAATCCAGCTCTTGGGGATCCAATACCTCCTTC  398

seq1  CAGCCTCCATGAGCACCTCCACACTATCTGCAACACTAATGCATACAACT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTCCATGAGCACCTCCACACTATCTGCAACACTAATGCATACAACT  448

seq1  AGATTAAAAATAAAAAAGAATAGCCAAACAACCAGCTTAGAGGAAAGCAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAAAAATAAAAAAGAATAGCCAAACAACCAGCTTAGAGGAAAGCAG  498

seq1  TTGTCTGTCCACCAATGCAAAGCAGGTCTGCAGTTCAGAAGTGATTCACT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTGTCCACCAATGCAAAGCAGGTCTGCAGTTCAGAAGTGATTCACT  548

seq1  GACACCCACCCAACAAGACATTGCCCAATGTCTGGACAGGAGCCATACCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCCACCCAACAAGACATTGCCCAATGTCTGGACAGGAGCCATACCT  598

seq1  GGCGTCGATTTGGGAGACTCCTTCACTGAAAATGGGTCATTCTTGGAGTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTCGATTTGGGAGACTCCTTCACTGAAAATGGGTCATTCTTGGAGTC  648

seq1  TGCCATCGGACGCCATTATTATCAGTGAAAACCACAACACTGGCCTCATA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATCGGACGCCATTATTATCAGTGAAAACCACAACACTGGCCTCATA  698

seq1  GAGAATAGAGATTCCATTCTGGGGCTGGCTGTGAGTGGCCTGGCCTGGGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATAGAGATTCCATTCTGGGGCTGGCTGTGAGTGGCCTGGCCTGGGA  748

seq1  TCATGGATTCTGCTTGTATGTTCCAACAAAAATGGTTTCCGGCCTTGTGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGATTCTGCTTGTATGTTCCAACAAAAATGGTTTCCGGCCTTGTGG  798

seq1  TGGTGGTGCAAGTCTTTAATTCCAGCATTTGGGAGGTAGAGGCAGAGGGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGTGCAAGTCTTTAATTCCAGCATTTGGGAGGTAGAGGCAGAGGGA  848

seq1  TCCCTATGAGTTCCAGATCAACCTTGTCCACATAGTGAATTC  891
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTATGAGTTCCAGATCAACCTTGTCCACATAGTGAATTC  890