BAC Information

Click to search

BAC

Clone NameB6Ng01-081L23
Chromosome7 (Build37)
Map Location 89,898,358 - 90,003,849
singlet/doubletdoublet
Overlap geneEftud1, LOC100038986, LOC619808
Upstream gene2610204K14Rik, 3110040N11Rik, Btbd1, Tm6sf1, LOC100043161, Hdgfrp3, Bnc1, Sh3gl3, Adamtsl3, 1700129I04Rik
Downstream geneRkhd3, LOC619909, A530021J07Rik, EG666160, Tmc3, Stard5, Il16, Phgdh-ps1, LOC666170, 1700026D08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081L23.bB6Ng01-081L23.g
ACCDH896504DH896505
length230305
definitionDH896504|Mus musculus domesticus DNA, BAC clone: B6Ng01-081L23, 5' end.DH896505|Mus musculus domesticus DNA, BAC clone: B6Ng01-081L23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,898,358 - 89,898,587)(90,003,545 - 90,003,849)
sequence
agaatagctggggggatgggggggtggagttaatactcagtagccatgtc
acactgcagatttccaaatgtcccttatctgtatgtaaatatatttagca
agatgattatatttagcagaggtttgtattcattaaattagtatatattt
tttaaaggtgattacaaactataacttgaaaaaatatctagaagtggggc
ctgtagagatggctcagtctggaaagtgtc
tgtcttcccctaagttgaggtctctaaaaagaacttcatgggctgctgga
gtttcatgacttgaaggcctaaaaccaaaggacagcaagaccctctaaaa
gcatagagcctgcctgaggcaggggcctctcctacctaacacaacctaat
tggccagatgatgtagtcctgagatcacaatcactccatattacaaatga
gtaaagtgtaagttgacttgggaagctctggatgccatagctgttgagaa
tcattccacaggtagcatcttccactgactccttcctccctcctccctcc
tccct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_89898358_89898587
seq2: B6Ng01-081L23.b_51_280

seq1  AGAATAGCTGGGGGGATGGGGGGGTGGAGTTAATACTCAGTAGCCATGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAGCTGGGGGGATGGGGGGGTGGAGTTAATACTCAGTAGCCATGTC  50

seq1  ACACTGCAGATTTCTAAATGTCCCTTATCTGTATGTAAATATATTTAGCA  100
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ACACTGCAGATTTCCAAATGTCCCTTATCTGTATGTAAATATATTTAGCA  100

seq1  AGATGATTATATTTAGCAGAGGTTTGTATTCATTAAATTAGTATATATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGATTATATTTAGCAGAGGTTTGTATTCATTAAATTAGTATATATTT  150

seq1  TTTAAAGGTGATTACAAACTATAACTTGAAAAAATATCTAGAAGTGGGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGGTGATTACAAACTATAACTTGAAAAAATATCTAGAAGTGGGGC  200

seq1  CTGGAGAGATGGCTCAGTCTGGAAAGTGTC  230
      ||| ||||||||||||||||||||||||||
seq2  CTGTAGAGATGGCTCAGTCTGGAAAGTGTC  230

seq1: chr7_90003545_90003849
seq2: B6Ng01-081L23.g_75_379 (reverse)

seq1  AGGGAGGAGGGAGGAGGGAGGAAGGAGTCAGTGGAAGATGCTACCTGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGAGGGAGGAGGGAGGAAGGAGTCAGTGGAAGATGCTACCTGTGG  50

seq1  AATGATTCTCAACAGCTATGGCATCCAGAGCTTCCCAAGTCAACTTACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATTCTCAACAGCTATGGCATCCAGAGCTTCCCAAGTCAACTTACAC  100

seq1  TTTACTCATTTGTAATATGGAGTGATTGTGATCTCAGGACTACATCATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTCATTTGTAATATGGAGTGATTGTGATCTCAGGACTACATCATCT  150

seq1  GGCCAATTAGGTTGTGTTAGGTAGGAGAGGCCCCTGCCTCAGGCAGGCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAATTAGGTTGTGTTAGGTAGGAGAGGCCCCTGCCTCAGGCAGGCTC  200

seq1  TATGCTTTTAGAGGGTCTTGCTGTCCTTTGGTTTTAGGCCTTCAAGTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTTTTAGAGGGTCTTGCTGTCCTTTGGTTTTAGGCCTTCAAGTCAT  250

seq1  GAAACTCCAGCAGCCCATGAAGTTCTTTTTAGAGACCTCAACTTAGGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTCCAGCAGCCCATGAAGTTCTTTTTAGAGACCTCAACTTAGGGGA  300

seq1  AGACA  305
      |||||
seq2  AGACA  305