BAC Information

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BAC

Clone NameB6Ng01-081N22
Chromosome7 (Build37)
Map Location 79,978,383 - 80,130,336
singlet/doubletdoublet
Overlap geneLOC100042029
Upstream geneMctp2, LOC100042873, LOC100042880, LOC233391, LOC665570
Downstream geneEG384643, LOC625243, 4930429H19Rik, LOC665588, Rgma, Chd2, 1810026B05Rik, EG665610, LOC244061, A830073O21Rik, St8sia2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081N22.bB6Ng01-081N22.g
ACCDH896593DH896594
length867995
definitionDH896593|Mus musculus domesticus DNA, BAC clone: B6Ng01-081N22, 5' end.DH896594|Mus musculus domesticus DNA, BAC clone: B6Ng01-081N22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,978,383 - 79,979,249)(80,129,786 - 80,130,336)
sequence
gaattcaatattgctagttttatctagacagatcttgaaatgtctaagtt
gtagtatcatttatactcttggataaaatgaggaacgtaaaataagtttt
acaaagcacatgatttttcttttcaattgaaaatcttcaaaacttgtttc
tttggactagggtgtaattcagtgtagaatgcttacctggcagtcatgaa
actttgggtttgaccacttaccatcaataatgaaaaccattcctctgctg
tgtcctgttttttgttgtgtcatgagccagaaatcctaaaagttgctgat
tgaagaatcctaatataaacatggtggaaaaacagaagtttcatagccct
ttaaaagcatagaactttcagtgaaatgctagatgttgagagaaataaag
aaagaagtggactgaacatggaggaatggaaggccttgaaagactcagaa
tagaatgcagaagcaagcacaagagtcctggtgtggctgaaggatgcccc
tgatggagactgcccaagaagtttggagccagaaggacttatcgtggaaa
catgggatcattgcgtactatctacatgatgggggtagggttcatggcag
ttggggctggctatgaatgtcagctggaaccaaggtacacaacagaggtg
gaaacaacggaagccctacgtaaacctgtctactcaaagactgaaaccaa
agataatgactgggattggggaggggggagagagattttcacccaattgc
caatttatttgatatcgtctaaaataccaaaagaaagaccaaggctgaga
agacagaagattactcaagagatgagcatggggaaacttagccgaatgtt
gtgttcttatatcttaa
gaattctctatttaggtctataccccatttttaaagttggatcatttgtt
tacttaatatcatgcgttcttatttattttggatattaactctccatcag
agttattgtattagtaaaaaaagtgtgtattagtaaagatattttcccac
tctatggactgccactttgtctggttcatggcacctttttcccatataga
tatgagatacatttattaaattttgattttagagcctatgctatcagtat
tcagttcagatagcctttccttgtgccaatggattcaagactattccata
ctttttcctttatcatattcagaggatatggtcttattttgcggtccttg
attctttgtgcagggtgatacatgtggttctatttacaattttctccatg
cacccatccagtttgaacagtaccctttgtccttttgtacagtgtgtacc
tctggcttcttgataaaaataatcatttgtccataggtatccagacttat
gcctgggtctatatttcaattacattgaacaacctgtctgtttttattat
tctgattttctagaataacttgagatgggagatggtgatatctcctgcag
ttatgttgttattcaggactattttagctatcctgtttgtttgagagagc
acacatgcatgcacacacgtgcacgtgtgcacacgcacagatgcgtgcat
acacacacatatgtttgtatgtttccatatgaagcagaaaattgtgttga
aatgttgacagggattgcattgagtttgtagattgcttctggcaagatgt
tcatttttaccatattatcttgctatggctctgattttttgtgtgtgtgt
gtgtgtgtagagttgattgatttagatcttactttgttcttctgcatggt
gcacattgacatcctgctgtcctagctcatgtgttgaggatgttaaaaat
tacatcacaagtgtagcccagagaatgaatgcaagcttcctgaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_79978383_79979249
seq2: B6Ng01-081N22.b_49_915

seq1  GAATTCAATATTGCTAGTTTTATCTAGACAGATCTTGAAATGTCTAAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATATTGCTAGTTTTATCTAGACAGATCTTGAAATGTCTAAGTT  50

seq1  GTAGTATCATTTATACTCTTGGATAAAATGAGGAACGTAAAATAAGTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTATCATTTATACTCTTGGATAAAATGAGGAACGTAAAATAAGTTTT  100

seq1  ACAAAGCACATGATTTTTCTTTTCAATTGAAAATCTTCAAAACTTGTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGCACATGATTTTTCTTTTCAATTGAAAATCTTCAAAACTTGTTTC  150

seq1  TTTGGACTAGGGTGTAATTCAGTGTAGAATGCTTACCTGGCAGTCATGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGACTAGGGTGTAATTCAGTGTAGAATGCTTACCTGGCAGTCATGAA  200

seq1  ACTTTGGGTTTGACCACTTACCATCAATAATGAAAACCATTCCTCTGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGGGTTTGACCACTTACCATCAATAATGAAAACCATTCCTCTGCTG  250

seq1  TGTCCTGTTTTTTGTTGTGTCATGAGCCAGAAATCCTAAAAGTTGCTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGTTTTTTGTTGTGTCATGAGCCAGAAATCCTAAAAGTTGCTGAT  300

seq1  TGAAGAATCCTAATATAAACATGGTGGAAAAACAGAAGTTTCATAGCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAATCCTAATATAAACATGGTGGAAAAACAGAAGTTTCATAGCCCT  350

seq1  TTAAAAGCATAGAACTTTCAGTGAAATGCTAGATGTTGAGAGAAATAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGCATAGAACTTTCAGTGAAATGCTAGATGTTGAGAGAAATAAAG  400

seq1  AAAGAAGTGGACTGAACATGGAGGAATGGAAGGCCTTGAAAGACTCAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGTGGACTGAACATGGAGGAATGGAAGGCCTTGAAAGACTCAGAA  450

seq1  TAGAATGCAGAAGCAAGCACAAGAGTCCTGGTGTGGCTGAAGGATGCCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATGCAGAAGCAAGCACAAGAGTCCTGGTGTGGCTGAAGGATGCCCC  500

seq1  TGATGGAGACTGCCCAAGAAGTTTGGAGCCAGAAGGACTTATCGTGGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGAGACTGCCCAAGAAGTTTGGAGCCAGAAGGACTTATCGTGGAAA  550

seq1  CATGGGATCATTGCGTACTATCTACATGATGGGGGTAGGGTTCATGGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGATCATTGCGTACTATCTACATGATGGGGGTAGGGTTCATGGCAG  600

seq1  TTGGGGCTGGCTATGAATGTCAGCTGGAACCAAGGTACACAACAGAGGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGCTGGCTATGAATGTCAGCTGGAACCAAGGTACACAACAGAGGTG  650

seq1  GAAACAACGGAAGCCCTACGTAAACCTGTCTACTCAAAGACTGAAACCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAACGGAAGCCCTACGTAAACCTGTCTACTCAAAGACTGAAACCAA  700

seq1  AGATAATGACTGGGATTGGGGA-GGGGGAGAGAGATTTTCACCCAATTGC  749
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGATAATGACTGGGATTGGGGAGGGGGGAGAGAGATTTTCACCCAATTGC  750

seq1  CAATTTATTTGATAATCGTCTAAAAGTACCAAAAGAAAGACCAAGGCTGA  799
      ||||||||||||| ||||||||||| ||||||||||||||||||||||||
seq2  CAATTTATTTGAT-ATCGTCTAAAA-TACCAAAAGAAAGACCAAGGCTGA  798

seq1  GAAGACAGAAGATAACACAAGAGATGAGCAT-GGGAAACTTAGCTG-ATG  847
      ||||||||||||| || |||||||||||||| |||||||||||| | |||
seq2  GAAGACAGAAGATTACTCAAGAGATGAGCATGGGGAAACTTAGCCGAATG  848

seq1  TTGTGTTTCTTATATTTTAA  867
      ||||| ||||||||| ||||
seq2  TTGTG-TTCTTATATCTTAA  867

seq1: chr7_80129786_80130336
seq2: B6Ng01-081N22.g_514_1063 (reverse)

seq1  TCTCAGGAAGCTTGCATTCTATCTCCTGGCTACACTTGTGATGTAATTTT  50
      |||||||||||||||||||  ||||  |||||||||||||||||||||||
seq2  TCTCAGGAAGCTTGCATTCATTCTCTGGGCTACACTTGTGATGTAATTTT  50

seq1  TAACATCCTCAACACATGGAGCTAGGACAGCAGGATGTCAATGTGCACCA  100
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TAACATCCTCAACACAT-GAGCTAGGACAGCAGGATGTCAATGTGCACCA  99

seq1  TGCAGAAGAACAAAGTTAGATCTAAATCAATC-ACTCTACACACACACAC  149
      |||||||||||||||| ||||||||||||||| |||||||||||||||||
seq2  TGCAGAAGAACAAAGTAAGATCTAAATCAATCAACTCTACACACACACAC  149

seq1  ACACACAAAAAATCAGAGCCATAGCAAGATTAATATGGTAAAAATGAACA  199
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ACACACAAAAAATCAGAGCCATAGCAAGA-TAATATGGTAAAAATGAACA  198

seq1  TCTTGCCAGAAGCAATCTACAAACTCAATGCAATCCCTGTCAACATTTCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCCAGAAGCAATCTACAAACTCAATGCAATCCCTGTCAACATTTCA  248

seq1  ACACAATTTTCTGCTTCATATGGAAACATACAAACATATGTGTGTGTATG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAATTTTCTGCTTCATATGGAAACATACAAACATATGTGTGTGTATG  298

seq1  CACGCATCTGTGCGTGTGCACACGTGCACGTGTGTGCATGCATGTGTGCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCATCTGTGCGTGTGCACACGTGCACGTGTGTGCATGCATGTGTGCT  348

seq1  CTCTCAAACAAACAGGATAGCTAAAATAGTCCTGAATAACAACATAACTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAAACAAACAGGATAGCTAAAATAGTCCTGAATAACAACATAACTG  398

seq1  CAGGAGATATCACCATCTCCCATCTCAAGTTATTCTAGAAAATCAGAATA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGATATCACCATCTCCCATCTCAAGTTATTCTAGAAAATCAGAATA  448

seq1  ATAAAAACAGACAGGTTGTTCAATGTAATTGAAATATAGACCCAGGCATA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAACAGACAGGTTGTTCAATGTAATTGAAATATAGACCCAGGCATA  498

seq1  AGTCTGGATACCTATGGACAAATGATTATTTTTATCAAGAAGCCAGAGGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGGATACCTATGGACAAATGATTATTTTTATCAAGAAGCCAGAGGT  548

seq1  AC  551
      ||
seq2  AC  550