BAC Information

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BAC

Clone NameB6Ng01-083C15
Chromosome7 (Build37)
Map Location 149,233,966 - 149,235,238
singlet/doubletsinglet
Overlap gene2700078K21Rik
Upstream geneB4galnt4, Pkp3, Sigirr, Trp53i5, Ptdss2, Rnh1, LOC546015, Hras1, Lrrc56, 1600016N20Rik, Rassf7, AA673488, Irf7, Mucdhl, Sct, Drd4, Deaf1, Tmem80, Eps8l2, B230206H07Rik, Taldo1, LOC100043585, Pddc1, Cend1, Slc25a22, Lrdd, Rplp2, Pnpla2, Efcab4a, Cd151, Polr2l, Tspan4, Chid1, Ap2a2, Muc6, LOC100039649, Muc2, Muc5ac, Muc5b, Tollip, EG623757, Brsk2
Downstream geneDusp8, LOC100039728, EG668763, LOC100043616, EG665295, LOC100043617, Krtap5-2, LOC100039757, LOC100039767, EG665305, Krtap5-5, EG640223, LOC672428, LOC100039800, LOC100043627, LOC100043629, ENSMUSG00000038442, Krtap5-1, Krtap5-4, LOC270015, 6330512M04Rik, Ctsd, Syt8, Tnni2, Lsp1, ENSMUSG00000043795, Tnnt3, Mrpl23, Nctc1, H19, Igf2, Igf2as, Ins2, EG640264, EG624121, Th, Ascl2, Tspan32, R74862
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083C15.bB6Ng01-083C15.g
ACCDH897506DH897507
length1,234399
definitionDH897506|Mus musculus domesticus DNA, BAC clone: B6Ng01-083C15, 5' end.DH897507|Mus musculus domesticus DNA, BAC clone: B6Ng01-083C15, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcacctatgccagcttttgttgtgcaaaccttgctccacaaaga
ggggataggagaaggaagaaggcaccaggaggaggtatttcatgagcaca
tgcacatggccaccagggccagccagttggagtaggagcagactaggtgg
aacatggcaagtgatatctcggagttactgatagtgaacgagacaaacta
gtgtaaagggttgatctccccagctctcatgctttaaggcttattataaa
tagaaaggtcttgtgtcttttacttgggaactaaatgatcttacatgggt
ttgaaccccccaaatatttacagcaacaagaagagtgtaaacacacatga
accaaatgactgtagcatttagcccactgagtgtggtggacgtggaagtc
catgacagtcacatggcacagccagacattactgactttcccatgacctc
tactacagctgtgagtggtggagacagatgctctcagcctaacctaccat
tagtgtctatctgccttggtgttcacctgtctcaaaaatcaacttaagag
ctggacagtggtggcacacacctttaattccagcacttgggaggcagaga
caagcagatttctgagttcaaggccagcctggcctacagagtgagttcca
agacagtcagggctacacagagaaaccctgtctcaaaagaaaaaacaaac
aaatcaacttatgactaaatcctaatactcagtactaacaccctgaccac
acagagaactcatgcctggagtacagcagaactcaaggtcccaagcacca
cttcaaccaaaacagaagacatcctcacagcagaatgtattggaaaataa
gattctgtgaccttcctactgacagtaccatttcagaaaggctccagcct
ccagtgatggataaggagatgttgccatcagtgttattgcatttccatgg
cataaaagagacagatactcatacagctccgctgcttatgaaggaagcag
cagagagactcccgctgcttatgaaggagcagcagagagactcccgctgc
tatgaaggagcagcagaaagattccgctgcttatgaaggacaggcgaaga
aactccactagacacatcctgggttcctggatgaggagagtacgaccgag
agacagagggttgtgagagattttttcagcaaggatgactaggaggactc
cacatactgcgtgtacagagaagagagttgcctt
aggctcaggctctcatccttgcacagcaagtgctttgcacactgagccat
ctccccggcctatggaagcatttccttccttccttccttccttccttcct
tccttacttacttccttccttccttccttccttcctttctttctcttcct
tcctccctgcctctacctttctcaaccttcctccctctaccttccatact
accttccttcctacctctctcactatctctctctctctctctctctttct
gtctttcttcctttttttcttatacatctttaatgaagacatgcataata
ggcaaacatggtttttttctggatttagtcataatacgaagaaaaatttt
tcccatttgtactggttagttttgtgtaaactataataggttgatatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_149233966_149235238
seq2: B6Ng01-083C15.b_42_1275

seq1  GAATTCTCACCTATGCCAGCTTTTGTTGTGCAAACCTTGCTCCACAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACCTATGCCAGCTTTTGTTGTGCAAACCTTGCTCCACAAAGA  50

seq1  GGGGATAGGAGAAGGAAGAAGGCACCAGGAGGAGGTATTTCATGAGCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATAGGAGAAGGAAGAAGGCACCAGGAGGAGGTATTTCATGAGCACA  100

seq1  TGCACATGGCCACCAGGGCCAGCCAGTTGGAGTAGGAGCAGACTAGGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACATGGCCACCAGGGCCAGCCAGTTGGAGTAGGAGCAGACTAGGTGG  150

seq1  AACATGGCAAGTGATATCTCGGAGTTACTGATAGTGAACGAGACAAACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGGCAAGTGATATCTCGGAGTTACTGATAGTGAACGAGACAAACTA  200

seq1  GTGTAAAGGGTTGATCTCCCCAGCTCTCATGCTTTAAGGCTTATTATAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAAAGGGTTGATCTCCCCAGCTCTCATGCTTTAAGGCTTATTATAAA  250

seq1  TAGAAAGGTCTTGTGTCTTTTACTTGGGAACTAAATGATCTTACATGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGGTCTTGTGTCTTTTACTTGGGAACTAAATGATCTTACATGGGT  300

seq1  TTGAACCCCCCAAATATTTACAGCAACAAGAAGAGTGTAAACACACATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACCCCCCAAATATTTACAGCAACAAGAAGAGTGTAAACACACATGA  350

seq1  ACCAAATGACTGTAGCATTTAGCCCACTGAGTGTGGTGGACGTGGAAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAATGACTGTAGCATTTAGCCCACTGAGTGTGGTGGACGTGGAAGTC  400

seq1  CATGACAGTCACATGGCACAGCCAGACATTACTGACTTTCCCATGACCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACAGTCACATGGCACAGCCAGACATTACTGACTTTCCCATGACCTC  450

seq1  TACTACAGCTGTGAGTGGTGGAGACAGATGCTCTCAGCCTAACCTACCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACAGCTGTGAGTGGTGGAGACAGATGCTCTCAGCCTAACCTACCAT  500

seq1  TAGTGTCTATCTGCCTTGGTGTTCACCTGTCTCAAAAATCAACTTAAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTCTATCTGCCTTGGTGTTCACCTGTCTCAAAAATCAACTTAAGAG  550

seq1  CTGGACAGTGGTGGCACACACCTTTAATTCCAGCACTTGGGAGGCAGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACAGTGGTGGCACACACCTTTAATTCCAGCACTTGGGAGGCAGAGA  600

seq1  CAAGCAGATTTCTGAGTTCAAGGCCAGCCTGGCCTACAGAGTGAGTTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAGATTTCTGAGTTCAAGGCCAGCCTGGCCTACAGAGTGAGTTCCA  650

seq1  AGACAGTCAGGGCTACACAGAGAAACCCTGTCTCAAAAGAAAAAACAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGTCAGGGCTACACAGAGAAACCCTGTCTCAAAAGAAAAAACAAAC  700

seq1  AAATCAACTTATGACTAAATCCTAATACTCAGTACTAACACCCTGACCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAACTTATGACTAAATCCTAATACTCAGTACTAACACCCTGACCAC  750

seq1  ACAGAGAACTCATGCCTGGAGTACAGCAGAACTCAAGGTCCCAAGCACCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAACTCATGCCTGGAGTACAGCAGAACTCAAGGTCCCAAGCACCA  800

seq1  CTTCAACCAAAACAGAAGACATCCTCACAGCAGAATGTATTGGAAAATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAACCAAAACAGAAGACATCCTCACAGCAGAATGTATTGGAAAATAA  850

seq1  GATTCTGTGACCTTCCTACTGACAGTACCATTTCCAGAAAGGCTCCAGCC  900
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GATTCTGTGACCTTCCTACTGACAGTACCATTT-CAGAAAGGCTCCAGCC  899

seq1  TCCAGTGATGGATAAGGAGATGTTGCCATCAGTGTTATTGCATTTCCATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTGATGGATAAGGAGATGTTGCCATCAGTGTTATTGCATTTCCATG  949

seq1  GCATAAAAGAAGACAAGATAACTCAATACAGCCCCGCTGCTTATGAAGGA  1000
      ||||||||| |||| |||| |||| ||||||| |||||||||||||||||
seq2  GCATAAAAG-AGAC-AGAT-ACTC-ATACAGCTCCGCTGCTTATGAAGGA  995

seq1  AGGCAGGCAGAGAGACTCCCGCTGCCTATGAAGGAGCAGGCAGAGAGACT  1050
      | ||| ||||||||||||||||||| |||||||||||| |||||||||||
seq2  A-GCA-GCAGAGAGACTCCCGCTGCTTATGAAGGAGCA-GCAGAGAGACT  1042

seq1  CCCGCTGCCTATGAAGGAGCAGGCAGAGAGACTCCCGCTGCCTATGAAGG  1100
      ||||||| ||||||||||||| ||||| ||| | ||||||| ||||||||
seq2  CCCGCTG-CTATGAAGGAGCA-GCAGAAAGA-TTCCGCTGCTTATGAAGG  1089

seq1  AGCAGGCAGAGAGACTCCACTAGCACCACTCCTGGTCTTCCTGAGTGAGG  1150
      | |||||  ||| |||||||||| ||   ||||||  ||||||  |||||
seq2  A-CAGGCGAAGAAACTCCACTAG-ACACATCCTGG-GTTCCTGGATGAGG  1136

seq1  AAGAGTAAAAGAACAGAGAAAAGACAAAAGAGGTATGTAGAAGACATTTT  1200
       |||||   |  || |||   ||||   |||||  |||   ||| |||||
seq2  -AGAGT---ACGACCGAG---AGAC---AGAGGGTTGT--GAGAGATTTT  1174

seq1  ATCAAGGCAAGGATGACATAAGGAAAGGACATCACAAACAATACTGCTGT  1250
       |||  |||||||||||   |||  |||||  |||     |||||||   
seq2  TTCA--GCAAGGATGAC--TAGG--AGGACTCCAC-----ATACTGCGTG  1213

seq1  TACAGAGAGAGAGATGTTGCCTT  1273
      |||||||| ||||| ||||||||
seq2  TACAGAGA-AGAGA-GTTGCCTT  1234