BAC Information

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BAC

Clone NameB6Ng01-083J20
Chromosome7 (Build37)
Map Location 30,745,971 - 30,930,989
singlet/doubletdoublet
Overlap geneLOC625437, LOC100043796, Zfp568, Zfp14, LOC100043798, Zfp82, Zfp566, Zfp260, Zfp382
Upstream geneActn4, Eif3s12, Map4k1, Ryr1, Rasgrp4, 1110006G06Rik, Spred3, Ggn, Psmd8, A230107C01Rik, Kcnk6, Yif1b, Spint2, Ppp1r14a, Neud4, Sipa1l3, LOC100043791, 4932431P20Rik, 4930432E11Rik, 1700067C01Rik, Zfp84, LOC100043794, Zfp30, EG625349, 6330581L23Rik, BC027344, Zfp420, Zfp27, Zfp74
Downstream geneZfp146, EG330503, Cox7a1, Capns1, Tbcb, Polr2i, Ovol3, Wdr62, EG668354, 1700020L13Rik, Clip3, Alkbh6, AI428936, 0610010E21Rik, Lrfn3, Tyrobp, Hcst, AY078069, Aplp1, Kirrel2, Nphs1, LOC100034728, Prodh2, Gm1082, Snx26, BC053749, Hspb6, 1810054G18Rik, Psenen, U2af1l4, Tmem149, Wbp7, Zbtb32, Upk1a, Cox6b1, Etv2, 3100004P22Rik, 2310022K01Rik, 4930479M11Rik, 2200002J24Rik, EG233075, Atp4a, Tmem147, Gapdhs, Sbsn, Dmkn, Krtdap, Ffar2, Ffar3, Ffar1, Cd22, Mag, Hamp2, Usf2-ps1, Hamp1, Usf2, LOC100043823, Lsr, Tmem162, Fxyd5, Fxyd7, Fxyd1, Lgi4, Fxyd3, Hpn, Scn1b, Gramd1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083J20.bB6Ng01-083J20.g
ACCDH897827DH897828
length513351
definitionDH897827|Mus musculus domesticus DNA, BAC clone: B6Ng01-083J20, 5' end.DH897828|Mus musculus domesticus DNA, BAC clone: B6Ng01-083J20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,745,971 - 30,746,488)(30,930,633 - 30,930,989)
sequence
ttctcaaaggcatttgtacagttgtgtgatgttggagaactatagaatcc
tggtgtctctgggtgagtgtgctggctagctctatgtcatctgagaagaa
ggaacctcaattaagaataagattgggggggctggtgagatggctcagcg
gttaggagcaccgactgctcttccaaaggtcctgagttcaaatcccagca
accacatagtaactcacaaccatccgtaatgagatctgatgccctcttct
ggagtgtctgaagacagctacagtgtacttacatataataaataaataaa
taaatattagaaaacatacctttaatcagaatcttaaaaaaaaaaaagaa
taagattgggggctggagagatcgctcagcagttaagagcactgactgct
cttccagaggtcctgagttcaattcccagcaaccacatggtggctcacta
ccatctgtaatgggatctcatgccctcttctggtgtgtcctaatacagct
actgtgtactcaa
ttgacccaaacgtatgtgacaagaggaagtaattctcacctcaacactgg
atgaagaccccaagggcggtatctgcttgggttatgttggctcctatcca
agaagacccagtggacaaacaagatcccgcccaaacaggtgggccctgca
tatccaggtgaacaggaggcggcagctggagaagaggctggacacagaga
aaggatgtgtaactgggggggggggggtcccagaaagcagcttctcgtag
gaaataagtagcgatagatgctacattacagttgccagttacgctggcct
cctgttgtcctcgagataaaatggaggttggagaattggggaaagggggt
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_30745971_30746488
seq2: B6Ng01-083J20.b_46_563

seq1  GAATTCTTCTCAAAGGCATTTGTACAGTTGTGTGATGTTGGAGAACTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTCAAAGGCATTTGTACAGTTGTGTGATGTTGGAGAACTATA  50

seq1  GAATCCTGGTGTCTCTGGGTGAGTGTGCTGGCTAGCTCTATGTCATCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCTGGTGTCTCTGGGTGAGTGTGCTGGCTAGCTCTATGTCATCTGA  100

seq1  GAAGAAGGAACCTCAATTAAGAATAAGATTGGGGGGGCTGGTGAGATGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGGAACCTCAATTAAGAATAAGATTGGGGGGGCTGGTGAGATGGC  150

seq1  TCAGCGGTTAGGAGCACCGACTGCTCTTCCAAAGGTCCTGAGTTCAAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCGGTTAGGAGCACCGACTGCTCTTCCAAAGGTCCTGAGTTCAAATC  200

seq1  CCAGCAACCACATAGTAACTCACAACCATCCGTAATGAGATCTGATGCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAACCACATAGTAACTCACAACCATCCGTAATGAGATCTGATGCCC  250

seq1  TCTTCTGGAGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGGAGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAAATA  300

seq1  AATAAATAAATATTAGAAAACATACCTTTAATCAGAATCTTAAAAAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAAATATTAGAAAACATACCTTTAATCAGAATCTTAAAAAAAAA  350

seq1  AAAGAATAAGATTGGGGGCTGGAGAGATCGCTCAGCAGTTAAGAGCACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATAAGATTGGGGGCTGGAGAGATCGCTCAGCAGTTAAGAGCACTG  400

seq1  ACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGC  450

seq1  TCACAACCATCTGTAATGGGATCTCATGCCCTCTTCTGGTGTGTCCGAAG  500
      |||| ||||||||||||||||||||||||||||||||||||||||| || 
seq2  TCACTACCATCTGTAATGGGATCTCATGCCCTCTTCTGGTGTGTCCTAAT  500

seq1  ACAGCTACAGTGTACTCA  518
      |||||||| |||||||||
seq2  ACAGCTACTGTGTACTCA  518

seq1: chr7_30930633_30930989
seq2: B6Ng01-083J20.g_67_423 (reverse)

seq1  CACCCCCTTTCCCCAATTCTCCAACCTCCATTTTATCTCGAGGACAACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCCTTTCCCCAATTCTCCAACCTCCATTTTATCTCGAGGACAACAG  50

seq1  GAGGCCAGCGTAACTGGCAACTGTAATGTAGCATCTATCGCTACTTATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCAGCGTAACTGGCAACTGTAATGTAGCATCTATCGCTACTTATTT  100

seq1  CCTACGAGAAGCTGCTTTCTGGGACCCCCCCCCCCCCAGTTACACATCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACGAGAAGCTGCTTTCTGGGACCCCCCCCCCCCCAGTTACACATCCT  150

seq1  TTCTCTGTGTCCAGCCTCTTCTCCAGCTGCCGCCTCCTGTTCACCTGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGTGTCCAGCCTCTTCTCCAGCTGCCGCCTCCTGTTCACCTGGAT  200

seq1  ATGCAGGGCCCACCTGTTTGGGCGGGATCTTGTTTGTCCACTGGGTCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGGGCCCACCTGTTTGGGCGGGATCTTGTTTGTCCACTGGGTCTTC  250

seq1  TTGGATAGGAGCCAACATAACCCAAGCAGATACCGCCCTTGGGGTCTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATAGGAGCCAACATAACCCAAGCAGATACCGCCCTTGGGGTCTTCA  300

seq1  TCCAGTGTTGAGGTGAGAATTACTTCCTCTTGTCACATACGTTTGGGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTGTTGAGGTGAGAATTACTTCCTCTTGTCACATACGTTTGGGTCA  350

seq1  AGAATTC  357
      |||||||
seq2  AGAATTC  357