BAC Information

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BAC

Clone NameB6Ng01-083J24
Chromosome7 (Build37)
Map Location 24,193,311 - 24,194,515
singlet/doubletsinglet
Overlap geneNlrp5
Upstream geneV1rd14, LOC100043051, LOC100043058, EG435947, EG667504, EG667512, LOC100043061, LOC100043638, LOC667527, EG667530, LOC667536, EG667543, LOC100043645, EG667551, LOC100043650, LOC100043067, LOC100043069, LOC670857, LOC620758, EG667570, LOC100043658, LOC100043079, LOC100043083, EG667586, EG667599, LOC100043086, LOC100043665, LOC667616, LOC100043667, LOC667623, LOC100043088, EG628664, Nlrp4e, LOC434261
Downstream geneLOC100043095, EG622032, LOC667651, LOC100043101, LOC100043103, EG546944, V1rd7, V1rd9, EG545934, V1rd22, LOC384573, EG622222, LOC546943, V1rd12, V1rd13, V1rd17, LOC100043121, V1rd16, LOC384575, V1rd20, V1rd18, V1rd15, EG622446, Zfp180, Zfp112, Zfp235, Zfp114, Zfp111, Zfp109, Zfp108, Zfp93, LOC100043690, Zfp61, LOC100043691, Zfp94, 1700008P20Rik, Lypd5, Kcnn4, 1500002O20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083J24.bB6Ng01-083J24.g
ACCDH897835DH897836
length1,1711,183
definitionDH897835|Mus musculus domesticus DNA, BAC clone: B6Ng01-083J24, 5' end.DH897836|Mus musculus domesticus DNA, BAC clone: B6Ng01-083J24, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttttttaaaaaacaattttttcaagtcttttttttttcttttc
cattttttattaggtatttagctcatttacatttccaatgctataccaaa
attcccccatagccactcacccccactcctctacccacccactccccctt
tttggccctgacgttcccctgtactggggcatataaagtttgcgtgtcca
atgggcctctctttccagtgatggccaactaggccatcttttgatacata
tgcagctagagtcaagagctccggggtactggttagttcataatgttgtt
ccacctatagggttgcagatccctttagctccttgggtactttctctagc
tcctccattgggagccctgtgatccatccattagctgactgtgagcatcc
acttctgtgtttgctaggccctggcatagtctcacaagagacagctacat
ctgggtcctttcgataaaatcttgctagtgtatgcaatggtgtccgcgtt
tggatgctgattatggggtggatccctggatatggcagtctctacatggt
ccatcctttcatctccactccaaactttgtctctgtaactccttccaagg
gtgttttgttcccacttctaaggaggggcatagtgttcacacttcagtct
tcatttttcttgagtttcatgtgtttaggaaattgtatcttatatcttgg
ctcagccgttaaaggctaggctcacaaccaaaaatataaaaaacaatttt
tattagatattttcttcctttacttttcaaaggctatcaaagtcccctat
accctccccaacccacccactcctgcttcctggcattcccctgtactggg
gtatataatatttgcaagaccaagggcctctcctccaatgatggccgact
aggctatcttctgctacatatgcagctagagacacgatctcgggggtact
gattagttcatattgttcctcttatagggttacagacacttcagtcctgg
taccttctctagctcccccatgggggccctgtgtcatcaataaatgactg
tgagcattaacttcgtgtttgcagactgcatagctcagaaaagacccaaa
ttaatatggtgcatgcagattgaactggtaccactcaggtccagctcaat
gtaattcagcctcagaaatcc
gaattctcctctgaggaaacagactgggaggaagaagcagcccattacca
gccagctaattggtcaagaaaaaagccaaaagcggctggcgaaggccagt
ttgctgattggcctcagggcagtcggcttcaaggtccgccctatgcggag
tccccgccctgcgtagtgcgtcagccctgcgcagagaggcagtgcgcaga
ctcattcattcccagagaggaacaaaggaaaatacaacaggcatttccgg
tctttgaaggagccgagggtgggcgtgtccacgctccggtagaatactta
caaattaaagaaattgccgagtcggtccgtaaatatggaaccaatgctaa
ttttaccttggtgcagttagacaggctcgccggcatggcactaactcctg
ctgactggcaaacggttgtaaaagccgctctccctagtatgggcaaatat
atggaatggagagcgctttggcacgaagctgcacaagcgcaggcccgagc
aaacgcagctgctttgactccagagcagagagattggacttttgacttgt
taacgggtcagggagcttattctgctgatcagacaaactaccattgggga
gcttatgcccagatttcttccacggctattagggcctggaaggcgctctc
tcgagcaggtgaaaccactggtcagttaacaaagataatccagggacctc
aggaatccttctcagattttgtggccagaatgacagaggcagcagagcgt
atttttggagagtcagagcaagctgcgcctctaatagaacagctaatcta
tgagcaagccacaaaggagtgccgagcggccatagccccaagaaagaaca
aaggcttacaagactggctcaggtctgtcgagagcttgggggacctctca
gcaatgcaggtttagcggctgccatccttcatcccaaaacgctcatgggc
agaatgatcagaggacatgttttactgcgaaagcctgggcatttaagaaa
gatgcagagctcagataacaggaggactctcactcttgctctagtgtggc
agggttatcatagagcgaacaggtcgctctgtgaagtattaaagggcgag
tctcccaccgatagtccatcactgagtgctaacgctactggtcctgtcag
gtcctcaagaatattgaaccggtttgtatccga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_24193311_24194515
seq2: B6Ng01-083J24.b_46_1216

seq1  GAATTCTTTTTTTAAAAAACAATTTTTTCAAGTCTTTTTTTTTTCTTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTTTAAAAAACAATTTTTTCAAGTCTTTTTTTTTTCTTTTC  50

seq1  CATTTTTTATTAGGTATTTAGCTCATTTACATTTCCAATGCTATACCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTTATTAGGTATTTAGCTCATTTACATTTCCAATGCTATACCAAA  100

seq1  ATTCCCCCATAGCCACTCACCCCCACTCCTCTACCCACCCACTCCCCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCCCATAGCCACTCACCCCCACTCCTCTACCCACCCACTCCCCCTT  150

seq1  TTTGGCCCTGACGTTCCCCTGTACTGGGGCATATAAAGTTTGCGTGTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCCCTGACGTTCCCCTGTACTGGGGCATATAAAGTTTGCGTGTCCA  200

seq1  ATGGGCCTCTCTTTCCAGTGATGGCCAACTAGGCCATCTTTTGATACATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCCTCTCTTTCCAGTGATGGCCAACTAGGCCATCTTTTGATACATA  250

seq1  TGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCATAATGTTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCATAATGTTGTT  300

seq1  CCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGGTACTTTCTCTAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGGTACTTTCTCTAGC  350

seq1  TCCTCCATTGGGAGCCCTGTGATCCATCCATTAGCTGACTGTGAGCATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCATTGGGAGCCCTGTGATCCATCCATTAGCTGACTGTGAGCATCC  400

seq1  ACTTCTGTGTTTGCTAGGCCCTGGCATAGTCTCACAAGAGACAGCTACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGTGTTTGCTAGGCCCTGGCATAGTCTCACAAGAGACAGCTACAT  450

seq1  CTGGGTCCTTTCGATAAAATCTTGCTAGTGTATGCAATGGTGTCCGCGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTCCTTTCGATAAAATCTTGCTAGTGTATGCAATGGTGTCCGCGTT  500

seq1  TGGATGCTGATTATGGGGTGGATCCCTGGATATGGCAGTCTCTACATGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGCTGATTATGGGGTGGATCCCTGGATATGGCAGTCTCTACATGGT  550

seq1  CCATCCTTTCATCTCCACTCCAAACTTTGTCTCTGTAACTCCTTCCAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCTTTCATCTCCACTCCAAACTTTGTCTCTGTAACTCCTTCCAAGG  600

seq1  GTGTTTTGTTCCCACTTCTAAGGAGGGGCATAGTGTTCACACTTCAGTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTGTTCCCACTTCTAAGGAGGGGCATAGTGTTCACACTTCAGTCT  650

seq1  TCATTTTTCTTGAGTTTCATGTGTTTAGGAAATTGTATCTTATATCTTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTTCTTGAGTTTCATGTGTTTAGGAAATTGTATCTTATATCTTGG  700

seq1  CTCAGCCGTTAAAGGCTAGGCTCACAACCAAAAATATAAAAAACAATTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCCGTTAAAGGCTAGGCTCACAACCAAAAATATAAAAAACAATTTT  750

seq1  TATTAGATATTTTCTTCCTTTACTTTTCAAAGGCTATCAAAGTCCCCTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGATATTTTCTTCCTTTACTTTTCAAAGGCTATCAAAGTCCCCTAT  800

seq1  ACCCTCCCCAACCCACCCACTCCTGCTTCCTGGCATTCCCCTGTACTGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCCCCAACCCACCCACTCCTGCTTCCTGGCATTCCCCTGTACTGGG  850

seq1  GTATATAATATTTGCAAGACCAAGGGGCCTCTCCTCCAATGATGGCCGAC  900
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GTATATAATATTTGCAAGACCAA-GGGCCTCTCCTCCAATGATGGCCGAC  899

seq1  TAGGCTATCTTCTGCTACATATGCAGCTAGAGACACGATCTCGGGGGGTA  950
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TAGGCTATCTTCTGCTACATATGCAGCTAGAGACACGATCTC-GGGGGTA  948

seq1  CTGATTAGTTCATATTGTTCCTCTTATAGGGTTACAGACACCTTCAGTTC  1000
      |||||||||||||||||||||||||||||||||||||||| |||||| ||
seq2  CTGATTAGTTCATATTGTTCCTCTTATAGGGTTACAGACA-CTTCAG-TC  996

seq1  CTTGGGTACCTTCTCTAGCTCCCCCATTGGGGGCCCTGTGTTCCATCCAA  1050
      ||  |||||||||||||||||||||| ||||||||||||||  ||| |||
seq2  CT--GGTACCTTCTCTAGCTCCCCCA-TGGGGGCCCTGTGT--CAT-CAA  1040

seq1  TAGATGACTGTGAGCATCTACTTCTGTGTTTGCCAGGCACTGGCATAGCC  1100
      || ||||||||||||||  ||||| ||||||| |||  ||| |||||| |
seq2  TAAATGACTGTGAGCATTAACTTC-GTGTTTG-CAG--ACT-GCATAG-C  1084

seq1  TCAGGAGAAGACCCCAGAATTTTAATATGTGTGCATGCAGGATTTGAGTT  1150
      ||| || |||||||    |  |||||||| ||||||||||   ||||   
seq2  TCA-GAAAAGACCC----AAATTAATATG-GTGCATGCAG--ATTGA-AC  1125

seq1  TGGTTACCCACATCAGTGTGTCAGAGCTACATGTAATTCAGCCTCCAAGA  1200
      ||||   |||| ||||   |||  ||||  |||||||||||||||  |||
seq2  TGGT--ACCAC-TCAG---GTC-CAGCTCAATGTAATTCAGCCTC--AGA  1166

seq1  AATCC  1205
      |||||
seq2  AATCC  1171