BAC Information

Click to search

BAC

Clone NameB6Ng01-083M18
Chromosome7 (Build37)
Map Location 25,125,251 - 25,263,767
singlet/doubletdoublet
Overlap geneLypd5, Kcnn4, 1500002O20Rik, Irgc1, Plaur
Upstream geneNlrp4e, LOC434261, Nlrp5, LOC100043095, EG622032, LOC667651, LOC100043101, LOC100043103, EG546944, V1rd7, V1rd9, EG545934, V1rd22, LOC384573, EG622222, LOC546943, V1rd12, V1rd13, V1rd17, LOC100043121, V1rd16, LOC384575, V1rd20, V1rd18, V1rd15, EG622446, Zfp180, Zfp112, Zfp235, Zfp114, Zfp111, Zfp109, Zfp108, Zfp93, LOC100043690, Zfp61, LOC100043691, Zfp94, 1700008P20Rik
Downstream geneCadm4, Zfp428, Irgq, 2310033E01Rik, Xrcc1, Zfp575, Ethe1, LOC100043138, EG232970, Lypd3, LOC100043706, Tex101, Gm1096, BC049730, EG210155, Cd177, Ceacam10, EG545936, LOC100043712, Lypd4, Dmrtc2, Rps19, Cd79a, Arhgef1, EG232974, Rabac1, Atp1a3, Grik5, Zfp574, Pou2f2, Dedd2, Zfp526, Gsk3a, 9130221H12Rik, Erf, Cic, Pafah1b3, EG623131, Tmem145, Megf8, Cnfn, Lipe, BC024561, LOC434148, Ceacam1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083M18.bB6Ng01-083M18.g
ACCDH897959DH897960
length3501,048
definitionDH897959|Mus musculus domesticus DNA, BAC clone: B6Ng01-083M18, 5' end.DH897960|Mus musculus domesticus DNA, BAC clone: B6Ng01-083M18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,263,412 - 25,263,767)(25,125,251 - 25,126,292)
sequence
aaggtcagctcctgtgacatagtttagggccagtgtagcctccacatacc
ccaccccaccccgtttcagtgaggccaagggctctcccttgagtttcttc
agtagacttctttgttcaaccatccttttcttcccggtgtctggcctcac
tagtaattctagccctagggctgtctgccagccatctattaagatgaggg
gaaccatcggtgctcagcatagacaaatggccaggttatgccaaagtgac
agggtgggttgggattgtgtgcattttttttcttctctctctctctctct
ctctctctctctctctctctctctctctctctctccctctctctctcatg

gaattctgcagaggctcctagtagacatctgtgcacctacgttcatccac
tagaggtggcatatggaaacaactcacgtggccattgatggatgggcaaa
ggaaaagtggtaggcccatacagtggaatattattcagtctttaagaaga
agaaagccaggtgtggtggtaatcccagcaatccttgggagacaagaggg
tcatcagttctgagatctttgtgtcaagacacaacgtttgtgagtctcaa
gacaaccagtgctacacagagagttccaggacagccagggaaacatacag
aaaccctgtctcaaaaaaaaaaaaaaataaaacaaacaacaatagcaaaa
attcaaaaagaaaaacaaggctattgtacaggggttggaacttgagaata
ctaggctaagtgaaaagagccggtcagaaaaggagaaggaacccacagtt
ccgcctgtgtaaggcttgcagtagaatcttgggcacagaaataaagtagg
agaccacctgacgggtacttccggtttcctaaccggtgcttctggtttcc
ggtcttctcccagatctcagatgtcagaagcttcatctttaggtttatat
tgaatgatagtgacagtggagcctttgagagtaatgaggctgagatgagg
tcaccagatgggtccccatggtggtatcaatgattttctgaagaaaaaca
gggctgggggatgtagtttagttggtagagtgctagcctggcatgcatca
caccctgggttcgaccctcaacactgcatatggcaggtgtgataccttat
gcatctttgatgtggaggcaggaatatcagaagttcaaggtcaacctttg
gctacatagcagtttgaggccagcctatgcttttatgagatctcaagaaa
ataaaaaacagggcctagagagatggcttcagtggtttagagccacttac
tattcttgcagaaaaacccatgtttctgttcccagcacccacatgatgct
cacaacccttctgtaactctggtttcagggcttcaagctgtcttcttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_25263412_25263767
seq2: B6Ng01-083M18.b_46_401 (reverse)

seq1  CATGAGACAGAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  50
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGAGAGAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  50

seq1  AGAGAGAGAGAGAGAGAAGAAAAAAAATGCACACAATCCCAACCCACCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAAGAAAAAAAATGCACACAATCCCAACCCACCCT  100

seq1  GTCACTTTGGCATAACCTGGCCATTTGTCTATGCTGAGCACCGATGGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTTTGGCATAACCTGGCCATTTGTCTATGCTGAGCACCGATGGTTC  150

seq1  CCCTCATCTTAATAGATGGCTGGCAGACAGCCCTAGGGCTAGAATTACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCATCTTAATAGATGGCTGGCAGACAGCCCTAGGGCTAGAATTACTA  200

seq1  GTGAGGCCAGACACCGGGAAGAAAAGGATGGTTGAACAAAGAAGTCTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGCCAGACACCGGGAAGAAAAGGATGGTTGAACAAAGAAGTCTACT  250

seq1  GAAGAAACTCAAGGGAGAGCCCTTGGCCTCACTGAAACGGGGTGGGGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAACTCAAGGGAGAGCCCTTGGCCTCACTGAAACGGGGTGGGGTGG  300

seq1  GGTATGTGGAGGCTACACTGGCCCTAAACTATGTCACAGGAGCTGACCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGTGGAGGCTACACTGGCCCTAAACTATGTCACAGGAGCTGACCTT  350

seq1  GAATTC  356
      ||||||
seq2  GAATTC  356

seq1: chr7_25125251_25126292
seq2: B6Ng01-083M18.g_73_1118

seq1  ATTCTGCAGAGGCTCCTAGTAGACATCTGTGCACCTACGTTCATCCACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGCAGAGGCTCCTAGTAGACATCTGTGCACCTACGTTCATCCACTA  50

seq1  GAGGTGGCATATGGAAACAACTCACGTGGCCATTGATGGATGGGCAAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGGCATATGGAAACAACTCACGTGGCCATTGATGGATGGGCAAAGG  100

seq1  AAAAGTGGTAGGCCCATACAGTGGAATATTATTCAGTCTTTAAGAAGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGGTAGGCCCATACAGTGGAATATTATTCAGTCTTTAAGAAGAAG  150

seq1  AAAGCCAGGTGTGGTGGTAATCCCAGCAATCCTTGGGAGACAAGAGGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCAGGTGTGGTGGTAATCCCAGCAATCCTTGGGAGACAAGAGGGTC  200

seq1  ATCAGTTCTGAGATCTTTGTGTCAAGACACAACGTTTGTGAGTCTCAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTTCTGAGATCTTTGTGTCAAGACACAACGTTTGTGAGTCTCAAGA  250

seq1  CAACCAGTGCTACACAGAGAGTTCCAGGACAGCCAGGGAAACATACAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAGTGCTACACAGAGAGTTCCAGGACAGCCAGGGAAACATACAGAA  300

seq1  ACCCTGTCTCAAAAAAAAAAAAAAATAAAACAAACAACAATAGCAAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGTCTCAAAAAAAAAAAAAAATAAAACAAACAACAATAGCAAAAAT  350

seq1  TCAAAAAGAAAAACAAGGCTATTGTACAGGGGTTGGAACTTGAGAATACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAAGAAAAACAAGGCTATTGTACAGGGGTTGGAACTTGAGAATACT  400

seq1  AGGCTAAGTGAAAAGAGCCGGTCAGAAAAGGAGAAGGAACCCACAGTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAAGTGAAAAGAGCCGGTCAGAAAAGGAGAAGGAACCCACAGTTCC  450

seq1  GCCTGTGTAAGGCTTGCAGTAGAATCTTGGGCACAGAAATAAAGTAGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGTAAGGCTTGCAGTAGAATCTTGGGCACAGAAATAAAGTAGGAG  500

seq1  ACCACCTGACGGGTACTTCCGGTTTCCTAACCGGTGCTTCTGGTTTCCGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCTGACGGGTACTTCCGGTTTCCTAACCGGTGCTTCTGGTTTCCGG  550

seq1  TCTTCTCCCAGATCTCAGATGTCAGAAGCTTCATCTTTAGGTTTATATTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCCCAGATCTCAGATGTCAGAAGCTTCATCTTTAGGTTTATATTG  600

seq1  AATGATAGTGACAGTGGAGCCTTTGAGAGTAATGAGGCTGAGATGAGGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATAGTGACAGTGGAGCCTTTGAGAGTAATGAGGCTGAGATGAGGTC  650

seq1  ACCAGATGGGTCCCCATGGTGGTATCAATGATTTTCTGAAGAAAAACAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGATGGGTCCCCATGGTGGTATCAATGATTTTCTGAAGAAAAACAGG  700

seq1  GCTGGGGGATGTAGTTTAGTTGGTAGAGTGCTAGCCTGGCATGCATCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGGGATGTAGTTTAGTTGGTAGAGTGCTAGCCTGGCATGCATCACA  750

seq1  CCCTGGGTTCGACCCTCAACACTGCATATGGCAGGTGTGATACCTTATGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGGTTCGACCCTCAACACTGCATATGGCAGGTGTGATACCTTATGC  800

seq1  ATCTTTGATGTGGAGGCAGGAATATCAGAAGTTCAAGGTCAACC-TTGGC  849
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATCTTTGATGTGGAGGCAGGAATATCAGAAGTTCAAGGTCAACCTTTGGC  850

seq1  TACATAGCAGATTTGAGGCCAGCCTAGGC-TATATGAGATCTCAAGAAAA  898
      |||||||||| ||||||||||||||| || | ||||||||||||||||||
seq2  TACATAGCAG-TTTGAGGCCAGCCTATGCTTTTATGAGATCTCAAGAAAA  899

seq1  TAAAAAACAGGG-CTAGAGAGATGGC-TCAGTGGTTTAGAG-CACTTACT  945
      |||||||||||| ||||||||||||| |||||||||||||| ||||||||
seq2  TAAAAAACAGGGCCTAGAGAGATGGCTTCAGTGGTTTAGAGCCACTTACT  949

seq1  ATTCTTGCAG-AAAACCCA-GGTTCTGTTCCCAGCACCCACATGATGGCT  993
      |||||||||| |||||||| | |||||||||||||||||||||||| |||
seq2  ATTCTTGCAGAAAAACCCATGTTTCTGTTCCCAGCACCCACATGAT-GCT  998

seq1  CACAACCC-TCTGTAACTCTGGTTTCAGGGGCTCCAAAGCTGTCTTCTGG  1042
      |||||||| |||||||||||||||||||||  ||  |||||||||||| |
seq2  CACAACCCTTCTGTAACTCTGGTTTCAGGGCTTC--AAGCTGTCTTCTTG  1046