BAC Information

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BAC

Clone NameB6Ng01-083O18
Chromosome7 (Build37)
Map Location 15,609,435 - 15,610,539
singlet/doubletsinglet
Overlap geneLOC100042685
Upstream geneEG629203, LOC677512, EG629219, EG434123, 2810007J24Rik, EG638251, B430211C08Rik, EG194588, LOC666352, EG666312, LOC666365, LOC671978, LOC100042677
Downstream geneEG666381, LOC100042691, LOC100042702, LOC100042707, LOC100042711, LOC100042714, LOC100042717, LOC100042721, LOC100042728, LOC100042731, LOC100042735, LOC100042739, LOC100042742, LOC235841, EG666407, LOC666337, Obox2, LOC100042753, LOC100042756, LOC100042758, EG545921, LOC100042762, Obox1, LOC100042765, Obox3, LOC100042771, Obox5, EG638338, Obox6, Crx, Crxos1, Sepw1, Gltscr2, Ehd2, Gltscr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-083O18.bB6Ng01-083O18.g
ACCDH898041DH898042
length1,0971,184
definitionDH898041|Mus musculus domesticus DNA, BAC clone: B6Ng01-083O18, 5' end.DH898042|Mus musculus domesticus DNA, BAC clone: B6Ng01-083O18, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctggtgaggggagttccttgatggtctaaactcaggaggatagc
tgacatccacatgtctctggcacacagaatctggactggcagcgaaatca
ggaacttcaccaccactgcaggaagtaggcctatagtgaggtccacttcc
aattctccgagggagttgtgaactcttccgatattctttacctggtctgt
tcttgaaccaggtctggaaaacaaaggagacatcagaggaatacctgatt
gcccctaacgggaccacaggttgaagcctttagatgggaggtgtttttat
agccatagaaactgcatgaggcagaaacagagaagtctgaggctctaaat
cccaaagagatcgcagtaaggtaggatgtatatgacttggcaccaaaatc
tggggaagattcaggtagtgtgtcctgtgtcttagtagaagccgtggtgt
atgggtctctaagaccctgcaggaaaataatcttgacccaaaatggtacc
aggtcaaaacagaatgggaggtccacccctagagggctgaatatccacca
ttcacaaatctccaaggtgcccttagcacataagaagcacggagttcagg
taattgattgaggaagagccccttttggtgttgaacagagggaaaagaga
gaggcatacctggatcttgtattctgtcacaccaatcattaatgccattg
ccttccgttgttccaggtctgggttctggcactgatgaaaatgttcttgc
agcagacacttttgttctttggagtacacggtgcgttcctttcgaacctt
tcttggagccacagggccagattgtttgttataatatttatcagacaatg
gcatagaacctatgggaacagggaaaccagaactcactgagggtcttgaa
agtatctgatgacttgggctgccctgagagtcttctcagagttggtaaac
ctgggcccatgacacacttgtttgcattcgcatactgagtttctggatgg
tctggggactctttcttgatgtagtccctttcatggactgatgacttgat
tgcatgacgtgttgggtcagtagaagacctctgacacattgaaggta
gaattctggacaaggtaaggctgttgatccaggtgggacccaggtctgct
ctgaaaaacaatggctttaacttcaaagataagagtcaaaccgaaagtcc
cctgcagtgacaattttacatttaaagtcggccactccactcggaggcac
aaaaatttgccaaggtcccttcataatttctactgaaagattatgggccc
ttgatatatcttcagtacagtggtctaaagtcaaacttaggggggtcttt
acagcctgcaccatcatttacaccaccacgtaaaacatgaaacaaacaca
gaaaacacacatacacacattgacagatgcacattttctaacggactgtc
aaaaccaactcagaaatgcaaaaggttggggaagtgcacaacccgcccca
gatggactcctggagtccttccccttgctcatggggttccaccagagcga
gcagcatctcgtgattcaagcacgtctgctgttcacactcagtgcctcat
cctgaggcaaaggtctccgtttctcatgaaacatagaggctgcaaatttc
aacactgaaccttgccggctcacagaaatatttttagacaaaaaatttca
cctccaagtggatcttcagagatgtgggtggtcacgagatcccagacgag
cccccaaatgaaagattccaagtggagccccttgctcagatctcaggaca
atagcagacacccaagaattcacaatggaccaagcatgatgcaaaccaca
tgaggctttattcagggaaagccagagttctggggacgactcatatccca
caaggggtagaggagtcaacctcgaggggtaagaagtcccattttttata
ggccctcagggagaaaggagaagggggaaataggggatttcctgatctaa
caatgtcttattctcaagaaatgggtatgggaagggtataagaaagagtc
tggtacagtgtagcaactcagattgacggactggtggttgctggaagaga
tttctgacttctttctcagcacattatacaaacaccttgcaatggctcat
caggtgggcaaacaaatgatcagacgggtcataaccattcgcagacacca
tgttcaaggagtgcaagaccattggaccctttgtctaactaagctatgct
gtctacagtaacatttatactggcccaattcatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_15609435_15610539
seq2: B6Ng01-083O18.b_48_1144 (reverse)

seq1  TACCTTTTCAAATGTGTCAGA-GTCCTCTACTGACCCCAACACGTCCATT  49
      ||||||    ||||||||||| ||| |||||||| |||||||||||   |
seq2  TACCTT---CAATGTGTCAGAGGTCTTCTACTGA-CCCAACACGTC--AT  44

seq1  GCAATCAAGTCATTCAGTCCATGAAAGGGACCTACATC-AGAAAGAGTCC  98
      |||||||||||| ||||||||||||||||| ||||||| |||||||||||
seq2  GCAATCAAGTCA-TCAGTCCATGAAAGGGA-CTACATCAAGAAAGAGTCC  92

seq1  CAAGAACCATCCAGAAACTCAGGTATGCGAATGCAAACAAGTGTTGTCAT  148
      | || |||||||||||||||| ||||||||||||||||||||| ||||||
seq2  CCAG-ACCATCCAGAAACTCA-GTATGCGAATGCAAACAAGTG-TGTCAT  139

seq1  GGGCCCAGGTTTACCAACTCTGAGAAGACTCTCAGGGCAG-CCAAGTCAT  197
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GGGCCCAGGTTTACCAACTCTGAGAAGACTCTCAGGGCAGCCCAAGTCAT  189

seq1  CAGATACTTTCAAGACCCTCAGTGAGTTCTGGTTTCCCTGTTCCCATAGG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATACTTTCAAGACCCTCAGTGAGTTCTGGTTTCCCTGTTCCCATAGG  239

seq1  TTCTATGCCATTGTCTGATAAATATTATAACAAACAATCTGGCCCTGTGG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATGCCATTGTCTGATAAATATTATAACAAACAATCTGGCCCTGTGG  289

seq1  CTCCAAGAAAGGTTCGAAAGGAACGCACCGTGTACTCCAAAGAACAAAAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAGAAAGGTTCGAAAGGAACGCACCGTGTACTCCAAAGAACAAAAG  339

seq1  TGTCTGCTGCAAGAACATTTTCATCAGTGCCAGAACCCAGACCTGGAACA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCTGCAAGAACATTTTCATCAGTGCCAGAACCCAGACCTGGAACA  389

seq1  ACGGAAGGCAATGGCATTAATGATTGGTGTGACAGAATACAAGATCCAGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGAAGGCAATGGCATTAATGATTGGTGTGACAGAATACAAGATCCAGG  439

seq1  TATGCCTCTCTCTTTTCCCTCTGTTCAACACCAAAAGGGGCTCTTCCTCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCTCTCTCTTTTCCCTCTGTTCAACACCAAAAGGGGCTCTTCCTCA  489

seq1  ATCAATTACCTGAACTCCGTGCTTCTTATGTGCTAAGGGCACCTTGGAGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATTACCTGAACTCCGTGCTTCTTATGTGCTAAGGGCACCTTGGAGA  539

seq1  TTTGTGAATGGTGGATATTCAGCCCTCTAGGGGTGGACCTCCCATTCTGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGAATGGTGGATATTCAGCCCTCTAGGGGTGGACCTCCCATTCTGT  589

seq1  TTTGACCTGGTACCATTTTGGGTCAAGATTATTTTCCTGCAGGGTCTTAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACCTGGTACCATTTTGGGTCAAGATTATTTTCCTGCAGGGTCTTAG  639

seq1  AGACCCATACACCACGGCTTCTACTAAGACACAGGACACACTACCTGAAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCATACACCACGGCTTCTACTAAGACACAGGACACACTACCTGAAT  689

seq1  CTTCCCCAGATTTTGGTGCCAAGTCATATACATCCTACCTTACTGCGATC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCCAGATTTTGGTGCCAAGTCATATACATCCTACCTTACTGCGATC  739

seq1  TCTTTGGGATTTAGAGCCTCAGACTTCTCTGTTTCTGCCTCATGCAGTTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGGGATTTAGAGCCTCAGACTTCTCTGTTTCTGCCTCATGCAGTTT  789

seq1  CTATGGCTATAAAAACACCTCCCATCTAAAGGCTTCAACCTGTGGTCCCG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGCTATAAAAACACCTCCCATCTAAAGGCTTCAACCTGTGGTCCCG  839

seq1  TTAGGGGCAATCAGGTATTCCTCTGATGTCTCCTTTGTTTTCCAGACCTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGGCAATCAGGTATTCCTCTGATGTCTCCTTTGTTTTCCAGACCTG  889

seq1  GTTCAAGAACAGACCAGGTAAAGAATATCGGAAGAGTTCACAACTCCCTC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAGAACAGACCAGGTAAAGAATATCGGAAGAGTTCACAACTCCCTC  939

seq1  GGAGAATTGGAAGTGGACCTCACTATAGGCCTACTTCCTGCAGTGGTGGT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAATTGGAAGTGGACCTCACTATAGGCCTACTTCCTGCAGTGGTGGT  989

seq1  GAAGTTCCTGATTTCGCTGCCAGTCCAGATTCTGTGTGCCAGAGACATGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTCCTGATTTCGCTGCCAGTCCAGATTCTGTGTGCCAGAGACATGT  1039

seq1  GGATGTCAGCTATCCTCCTGAGTTTAGACCATCAAGGAACTCCCCTCACC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTCAGCTATCCTCCTGAGTTTAGACCATCAAGGAACTCCCCTCACC  1089

seq1  AGGAATTC  1105
      ||||||||
seq2  AGGAATTC  1097