BAC Information

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BAC

Clone NameB6Ng01-084C20
Chromosome7 (Build37)
Map Location 134,934,375 - 135,058,797
singlet/doubletdoublet
Overlap geneSetd1a, Hsd3b7, Stx1b2, Stx4a, Zfp668, Zfp646, BC039632, Vkorc1, Bckdk, Myst1
Upstream genePpp4c, Aldoa, 1500016O10Rik, 4930451I11Rik, Doc2a, Ccdc95, Hirip3, 1110032O16Rik, Kctd13, A830007L07Rik, Sez6l2, D830044I16Rik, Cdipt, Mvp, 2900092E17Rik, Maz, Kif22, 1810010M01Rik, AI467606, Qprt, Spn, Cd2bp2, Tbc1d10b, Mylpf, Sept1, LOC100043580, Zfp553, Zfp771, 2410015N17Rik, Sephs2, Itgal, Zfp768, LOC100043097, LOC100043589, 6430604K15Rik, 9130019O22Rik, E430018J23Rik, LOC100043590, Zfp764, Zfp688, Zfp689, Prr14, Fbs1, 1700008J07Rik, LOC100043597, D030022P06Rik, Phkg2, Gm166, Rnf40, 1700120K04Rik, Zfp629, Bcl7c, Ctf1, Ctf2, Fbxl19, Tmem142c
Downstream genePrss8, Prss36, Fus, Pycard, Trim72, LOC436010, EG668675, Itgam, Itgax, Itgad, Cox6a2, LOC100043133, Armc5, Tgfb1i1, Slc5a2, BC017158, EG628781, Rgs10, LOC100043643, Tial1, Bag3, EG639030, Inpp5f, LOC100043651, 1110007A13Rik, Sec23ip
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084C20.bB6Ng01-084C20.g
ACCDH898217DH898218
length8411,197
definitionDH898217|Mus musculus domesticus DNA, BAC clone: B6Ng01-084C20, 5' end.DH898218|Mus musculus domesticus DNA, BAC clone: B6Ng01-084C20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,057,960 - 135,058,797)(134,934,375 - 134,935,587)
sequence
gaattcttctcggccttcctggtcattcactcgagactggatcacttctg
ctgaatctgtcaagaaaaaaaaaaagggggggggatctgaggggtaattt
ccagatccatctgtccacacctgccatttaccctgtaaggtgagccaggt
taggacttgggggaggtacagggggtgttacagaggaccagagatttgaa
aactgagaaaacctggtatttaagcatgtttaagactacctccaaagtca
gtgctcattcactcatttgggggccatgagagctggctggggattaagac
agtttaagcttccttcacatttcctaaatgactgtagccccatggtttga
ctttctgagctttagttccttcatctggagaatacctaaaagggtgacca
tgctttagtctgtagcacagggacagatgcagagatgtctagaaattaat
gctcgtctggcgctccactatgtaatgctggccacagtgagaagatacag
tgaggaatcacaagagatcttgttctctagtgttttcccattgacagaga
aaggcagataattttaacagtatggctgccgggtgtggtggcgcacacct
tttaatcccagcacttgggaggcagaggcaggcggatttcttctgagttc
gaggccagcctggtctacagagtgagttccaggacagccaggggctacac
agagaaaccctggtctctaaaaaactaaaaacaaaacaaataaaaatccc
atatggctgaggtacgataaaaaaaaacgtgccaaccatgcaattaactt
gactttgcctgaaggggtctataatgggattcaccacagga
gaattctttttattttctacagaacttcagtggtctaggccaactgattg
ccagtctccaggtctacctatatctgtctgtcctggaactctttctgtag
accgggccttcatctctatttctgtgtggtagaacatctccttcttgggt
ttagcatttaggcggggatcttcccaacttgttcttccagcagagcccag
ggctttccttccttcactctgatgttgtcactctgagcatgcacttgctt
atttaacttcttgagctttcagcacctggcctagagcctcacatccagag
gacttcgtcagtgctccctcctcttgaccactaactaccattgtggattt
ccaggtgaggatgaggacagtgactcgtcctcccagtgctctctgtatgc
ggattcagatggtgaaaatggcagcacatcagactccgagagtggcagct
cgtcttcctcttcctcatcgtcttcctcctcttcctcctcttcctcatca
gagtcctcctctgaggaagaggagcagtcagcagtcattccctcagcttc
accccccagagaagttccagagccccttccagctcctgatgagaagcctg
agacagacgggcttgtagattcccctgtcatgcctctctctgaaaaggag
acattgcccacacagcctgcaggtaggtggcatgggacaggtgacatgat
taagatacatgtttatcagggtcttggagaatggccttggggtgctgtgt
ttatgtggaacagttacatgggcacagagtaacactaacgcatgactgag
ctcttgtgcccttgtcaagctcttgtcattcaatagttcttgttatcata
tatgcatatgatgggcctcctgtagggattatttattcatacagtacggt
ttatcgagcattgctactggtaccaggagcagtgtgagatgtgatgatgt
tgtctgacaggcactgctctcatctcacaagctttcgtctgtaagagaga
aggccagttaagcaataatgcatagaaataactgctttcaccaatacgtt
ctatgagaacaaagttcagaacctctgaaattcctggaggtatctatggg
gctggagacactctcctgtctgaagcatagtttgagctgatgttcgacaa
gacattgagggagagcttctataggtcaaactagttgaaggtttgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_135057960_135058797
seq2: B6Ng01-084C20.b_46_886 (reverse)

seq1  TCCTGTGGTG-ATCCCATTCTAGACCCCTTCAGGCAAAGTC-AGTTGCTT  48
      |||||||||| |||||||| ||||||||||||||||||||| ||||  ||
seq2  TCCTGTGGTGAATCCCATTATAGACCCCTTCAGGCAAAGTCAAGTTAATT  50

seq1  GCATGGTCTGGCACGTTTTTCTTTTTCGTACCTCAGCCATACTGGGTTTT  98
      ||||||| |||||||||||| ||| |||||||||||||||| |||| |||
seq2  GCATGGT-TGGCACGTTTTTTTTTATCGTACCTCAGCCATA-TGGGATTT  98

seq1  TTTGTTTGTTTGTTTTTTGTTTTTTCGAGA-CAGGGTTTCTCTGTGTAG-  146
      ||  ||  ||||||||| ||||||| |||| |||||||||||||||||| 
seq2  TTATTTGTTTTGTTTTTAGTTTTTTAGAGACCAGGGTTTCTCTGTGTAGC  148

seq1  CCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCA  198

seq1  GAAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATT-AAAGGTGTG  245
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GAAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAAGGTGTG  248

seq1  CGCCACCACACCCGGCAGCCATACTGTTAAAATTATCTGCCTTTCTCTGT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCACCACACCCGGCAGCCATACTGTTAAAATTATCTGCCTTTCTCTGT  298

seq1  CAATGGGAAAACACTAGAGAACAAGATCTCTTGTGATTCCTCACTGTATC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGGAAAACACTAGAGAACAAGATCTCTTGTGATTCCTCACTGTATC  348

seq1  TTCTCACTGTGGCCAGCATTACATAGTGGAGCGCCAGACGAGCATTAATT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCACTGTGGCCAGCATTACATAGTGGAGCGCCAGACGAGCATTAATT  398

seq1  TCTAGACATCTCTGCATCTGTCCCTGTGCTACAGACTAAAGCATGGTCAC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGACATCTCTGCATCTGTCCCTGTGCTACAGACTAAAGCATGGTCAC  448

seq1  CCTTTTAGGTATTCTCCAGATGAAGGAACTAAAGCTCAGAAAGTCAAACC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTAGGTATTCTCCAGATGAAGGAACTAAAGCTCAGAAAGTCAAACC  498

seq1  ATGGGGCTACAGTCATTTAGGAAATGTGAAGGAAGCTTAAACTGTCTTAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGCTACAGTCATTTAGGAAATGTGAAGGAAGCTTAAACTGTCTTAA  548

seq1  TCCCCAGCCAGCTCTCATGGCCCCCAAATGAGTGAATGAGCACTGACTTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAGCCAGCTCTCATGGCCCCCAAATGAGTGAATGAGCACTGACTTT  598

seq1  GGAGGTAGTCTTAAACATGCTTAAATACCAGGTTTTCTCAGTTTTCAAAT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTAGTCTTAAACATGCTTAAATACCAGGTTTTCTCAGTTTTCAAAT  648

seq1  CTCTGGTCCTCTGTAACACCCCCTGTACCTCCCCCAAGTCCTAACCTGGC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTCCTCTGTAACACCCCCTGTACCTCCCCCAAGTCCTAACCTGGC  698

seq1  TCACCTTACAGGGTAAATGGCAGGTGTGGACAGATGGATCTGGAAATTAC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTTACAGGGTAAATGGCAGGTGTGGACAGATGGATCTGGAAATTAC  748

seq1  CCCTCAGATCCCCCCCCCTTTTTTTTTTTCTTGACAGATTCAGCAGAAGT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAGATCCCCCCCCCTTTTTTTTTTTCTTGACAGATTCAGCAGAAGT  798

seq1  GATCCAGTCTCGAGTGAATGACCAGGAAGGCCGAGAAGAATTC  838
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCAGTCTCGAGTGAATGACCAGGAAGGCCGAGAAGAATTC  841

seq1: chr7_134934375_134935587
seq2: B6Ng01-084C20.g_69_1265

seq1  GAATTCTTTCTATTTTCTACAGAACTTCAGTGGTCTAGGCCAACTGATTG  50
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTATTTTCTACAGAACTTCAGTGGTCTAGGCCAACTGATTG  50

seq1  CCAGTCTCCAGGTCTACCTATATCTGTCTGTCCTGGAACTCTTTCTGTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCTCCAGGTCTACCTATATCTGTCTGTCCTGGAACTCTTTCTGTAG  100

seq1  ACCGGGCCTTCATCTCTATTTCTGTGTGGTAGAACATCTCCTTCTTGGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGGGCCTTCATCTCTATTTCTGTGTGGTAGAACATCTCCTTCTTGGGT  150

seq1  TTAGCATTTAGGCGGGGATCTTCCCAACTTGTTCTTCCAGCAGAGCCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCATTTAGGCGGGGATCTTCCCAACTTGTTCTTCCAGCAGAGCCCAG  200

seq1  GGCTTTCCTTCCTTCACTCTGATGTTGTCACTCTGAGCATGCACTTGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTCCTTCCTTCACTCTGATGTTGTCACTCTGAGCATGCACTTGCTT  250

seq1  ATTTAACTTCTTGAGCTTTCAGCACCTGGCCTAGAGCCTCACATCCAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAACTTCTTGAGCTTTCAGCACCTGGCCTAGAGCCTCACATCCAGAG  300

seq1  GACTTCGTCAGTGCTCCCTCCTCTTGACCACTAACTACCATTGTGGATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCGTCAGTGCTCCCTCCTCTTGACCACTAACTACCATTGTGGATTT  350

seq1  CCAGGTGAGGATGAGGACAGTGACTCGTCCTCCCAGTGCTCTCTGTATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTGAGGATGAGGACAGTGACTCGTCCTCCCAGTGCTCTCTGTATGC  400

seq1  GGATTCAGATGGTGAAAATGGCAGCACATCAGACTCCGAGAGTGGCAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCAGATGGTGAAAATGGCAGCACATCAGACTCCGAGAGTGGCAGCT  450

seq1  CGTCTTCCTCTTCCTCATCGTCTTCCTCCTCTTCCTCCTCTTCCTCATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTTCCTCTTCCTCATCGTCTTCCTCCTCTTCCTCCTCTTCCTCATCA  500

seq1  GAGTCCTCCTCTGAGGAAGAGGAGCAGTCAGCAGTCATTCCCTCAGCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCTCCTCTGAGGAAGAGGAGCAGTCAGCAGTCATTCCCTCAGCTTC  550

seq1  ACCCCCCAGAGAAGTTCCAGAGCCCCTTCCAGCTCCTGATGAGAAGCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCCAGAGAAGTTCCAGAGCCCCTTCCAGCTCCTGATGAGAAGCCTG  600

seq1  AGACAGACGGGCTTGTAGATTCCCCTGTCATGCCTCTCTCTGAAAAGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGACGGGCTTGTAGATTCCCCTGTCATGCCTCTCTCTGAAAAGGAG  650

seq1  ACATTGCCCACACAGCCTGCAGGTAGGTGGCATGGGACAGGTGACATGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGCCCACACAGCCTGCAGGTAGGTGGCATGGGACAGGTGACATGAT  700

seq1  TAAGATACATGTTTATCAGGGTCTTGGAGAATGGCCTTGGGGTGCTGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATACATGTTTATCAGGGTCTTGGAGAATGGCCTTGGGGTGCTGTGT  750

seq1  TTATGTGGAACAGTTACATGGGCACAGAGTAACACTAACGCATGACTGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTGGAACAGTTACATGGGCACAGAGTAACACTAACGCATGACTGAG  800

seq1  CTCTTGTGCCCTTGTCAAGCTCTTGTCATTCAATAGTTCTTGTTATCATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGTGCCCTTGTCAAGCTCTTGTCATTCAATAGTTCTTGTTATCATA  850

seq1  TATGCATATGATGGGCCTCCTGTAGGGATTATTTATTCATACAGTAGGGT  900
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TATGCATATGATGGGCCTCCTGTAGGGATTATTTATTCATACAGTACGGT  900

seq1  TTATCGAGCATTGCTACTGGTACCAGGAGCAGTGTGAAGATGTGATGATG  950
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTATCGAGCATTGCTACTGGTACCAGGAGCAGTGTG-AGATGTGATGATG  949

seq1  -TGTCTGACAGGCACTGCTCTCATCCTCACAAAGCTTTCGGTCTGTAAGG  999
       ||||||||||||||||||||||| ||||| |||||||| |||||||| |
seq2  TTGTCTGACAGGCACTGCTCTCAT-CTCAC-AAGCTTTC-GTCTGTAA-G  995

seq1  AGAGAAAGGCCAGTTAAGCAATAAATGCATAGAAATAACTGCTTTCAACC  1049
      |||| ||||||||||||||||| ||||||||||||||||||||||||  |
seq2  AGAG-AAGGCCAGTTAAGCAAT-AATGCATAGAAATAACTGCTTTCA--C  1041

seq1  CAATACGTTCTATGAAGACAAAGTACAAGGAA---CTCAGATTCCTGAGG  1096
      |||||||||||||||  ||||||| ||  |||   || | |||||||  |
seq2  CAATACGTTCTATGAGAACAAAGTTCA--GAACCTCTGAAATTCCTGGAG  1089

seq1  GTATCTATGGGTCTGGGAGCATCCTCTTG-CTGAAGCATAG-TTGAGCTG  1144
      ||||||||||| ||||   ||  ||| || ||||||||||| ||||||||
seq2  GTATCTATGGGGCTGGAGACACTCTCCTGTCTGAAGCATAGTTTGAGCTG  1139

seq1  ATGTCTGGACAAAGCAGTGAGGGAGGAGGCTCTACATAAGGTCCAGAACA  1194
      |||| | |||||  || ||||||| |||  ||||    |||||      |
seq2  ATGT-TCGACAAGACATTGAGGGA-GAGCTTCTA---TAGGTC-----AA  1179

seq1  GCAAGTTAGAAGGTTTGGA  1213
       | |||| |||||||||||
seq2  ACTAGTT-GAAGGTTTGGA  1197