BAC Information

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BAC

Clone NameB6Ng01-084H03
Chromosome7 (Build37)
Map Location 38,183,477 - 38,356,925
singlet/doubletdoublet
Overlap geneZfp536
Upstream geneTshz3, LOC100043874
Downstream geneLOC100043453, EG627844, C80913, Ccne1, 1600014C10Rik, Plekhf1, Pop4, LOC668519, LOC100043464, 1700010N08Rik, EG627975, EG625594, EG627983, EG434171, LOC100043467
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084H03.bB6Ng01-084H03.g
ACCDH898400DH898401
length1,1951,192
definitionDH898400|Mus musculus domesticus DNA, BAC clone: B6Ng01-084H03, 5' end.DH898401|Mus musculus domesticus DNA, BAC clone: B6Ng01-084H03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,183,477 - 38,184,687)(38,355,721 - 38,356,925)
sequence
gaattctcacagaatgactgaacttagagacctacttgtatgtcaatcta
gatctcagagtaccacgcacaccatggaatctccagctagcttctaggct
gagttttacaaagcaggagagagggtttatacagtagttgctaagtgttg
caaagggcttttccccccaaaggttcgtgtgtttgaggattgttccctgt
aacaataggattgggacaggcttagtggacagtaattaggtcatgagggc
cccatcctgaagaatggattaatgtaggtctcttggagtagaccagatct
cataggagtgtatttgctgtatgaaggacaggttgtgataaagcaaggcc
accccaaaggtggctttcgtcactactacatgaagctgtgataaagccag
agatccctaaccagggtaccatattgttttacccttccatatatgagtct
catgagttaagtaacccccttcactttataaattaaccatcctcgggtgt
tttgttattgccacacaaaaatgaactaatagaataaagtcatagtgaga
caggctcacttcagaaccttgtctcataaggcacacaacctctctaaccc
ataaaacacagaggaaattttcactcactcattcattcattcattcattc
attcattcattcatccatccatctagccactcattcatttgatatatttt
aaagaccttgccaacaccaagcacccacgaagtgctggagtttgactaac
cggataagtagccaaaccctttatctatgcagaggatgctggagtagcag
atggtgacacaccctggagacagactggggagaaatctagaatgagaatt
gttggagccttaaatgggggagggatacccagggaaggatgctctgggat
attatagataaaaagaccttgcgaaagtgaggagccatatttaccgtgcc
atttagtgggtgaatgctctgcaggggacagaggacatggcaatattgtg
ctttgagacagagcgtgacagcttttaccagagagccagtatgggcaggt
caagttctgttcacagtcagtgtcaagtagaggtgcacagtgggtttagc
ttgtgcaagaggatccccaagatctgacctttctagcatgttcagccaga
catggaagaatcatgagcaagttgaggacaggctctgcagcggag
gaattcagtaggttggttgagtaaactctagaatatccatgacaaccttg
ctcctgaccagtcttcaaaagggaagatgacaaacttggaagttgttttt
aactgcaggtgaacatgcccctctgagagggtgtgtgagcatgtgcggag
ttgaccatgccatcattcaagggctacactggactgaagtccctctccct
cctgtaactgatctcccacttcattactcttgctaagacccatgctacta
ctctcgcactggagacccctatgtcacacactgtctagtctatctggaag
gcagcccagcaaacagcagactccactgctaaatgtacttgcccacagtt
gatagctctggccctacaagtcccccagtgaagtttcttggtcccacggt
tttggctagggttaaacacagggtctctgggcattctagctggccaatac
attgaaagactgggctctaaagagatgcacacaaatccattctaaaagca
ggaaatgaacctggactccttcaggggaaggcatgtttgaaaacagaagg
actccaggcatgggctcattgctttccaagctaagcaccctgcaggctct
gatgtggaggagggcctgccctctgacccacctagaacagtctggtgttt
gctgttctgcacaggctgtggagggggcagaggggactattaaagacaat
tacgcagactagctttgagtgtttgtgtttaacaaacagctttgagttct
aattttctgcaaaacacatactgcaggtacaatttgtactcattactgta
tattggggaaagttattaaaaacactcaaacttggttgagacttcctatg
gcatcgtccctgggattttaattggtttttatctagttctgcaaaagatc
tctttaaggccatcaaagtccctggctcgactgtcttgccagccaaaaga
cagggagaaaccattatattgtataagtctacttcatccaacatcaacag
cctggaaagtccatcaagagttcatcaggagacaagtataggatggacac
gataccagatgacaaaaaaaatcatggtttcataacttagggttaaattt
tatttctggagtttgcaagcctgctactagcagctctctaaaattgaatt
ctcgttataggcttcttggcaaactgaagatttatgattata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_38183477_38184687
seq2: B6Ng01-084H03.b_38_1232

seq1  GAATTCTCACAGAATGACTGAACTTAGAGACCTACTTGTATGTCAATCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACAGAATGACTGAACTTAGAGACCTACTTGTATGTCAATCTA  50

seq1  GATCTCAGAGTACCACGCACACCATGGAATCTCCAGCTAGCTTCTAGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCAGAGTACCACGCACACCATGGAATCTCCAGCTAGCTTCTAGGCT  100

seq1  GAGTTTTACAAAGCAGGAGAGAGGGTTTATACAGTAGTTGCTAAGTGTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTTACAAAGCAGGAGAGAGGGTTTATACAGTAGTTGCTAAGTGTTG  150

seq1  CAAAGGGCTTTTCCCCCCAAAGGTTCGTGTGTTTGAGGATTGTTCCCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGGCTTTTCCCCCCAAAGGTTCGTGTGTTTGAGGATTGTTCCCTGT  200

seq1  AACAATAGGATTGGGACAGGCTTAGTGGACAGTAATTAGGTCATGAGGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATAGGATTGGGACAGGCTTAGTGGACAGTAATTAGGTCATGAGGGC  250

seq1  CCCATCCTGAAGAATGGATTAATGTAGGTCTCTTGGAGTAGACCAGATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCCTGAAGAATGGATTAATGTAGGTCTCTTGGAGTAGACCAGATCT  300

seq1  CATAGGAGTGTATTTGCTGTATGAAGGACAGGTTGTGATAAAGCAAGGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGAGTGTATTTGCTGTATGAAGGACAGGTTGTGATAAAGCAAGGCC  350

seq1  ACCCCAAAGGTGGCTTTCGTCACTACTACATGAAGCTGTGATAAAGCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAAAGGTGGCTTTCGTCACTACTACATGAAGCTGTGATAAAGCCAG  400

seq1  AGATCCCTAACCAGGGTACCATATTGTTTTACCCTTCCATATATGAGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCCTAACCAGGGTACCATATTGTTTTACCCTTCCATATATGAGTCT  450

seq1  CATGAGTTAAGTAACCCCCTTCACTTTATAAATTAACCATCCTCGGGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGTTAAGTAACCCCCTTCACTTTATAAATTAACCATCCTCGGGTGT  500

seq1  TTTGTTATTGCCACACAAAAATGAACTAATAGAATAAAGTCATAGTGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTATTGCCACACAAAAATGAACTAATAGAATAAAGTCATAGTGAGA  550

seq1  CAGGCTCACTTCAGAACCTTGTCTCATAAGGCACACAACCTCTCTAACCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTCACTTCAGAACCTTGTCTCATAAGGCACACAACCTCTCTAACCC  600

seq1  ATAAAACACAGAGGAAATTTTCACTCACTCATTCATTCATTCATTCATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACACAGAGGAAATTTTCACTCACTCATTCATTCATTCATTCATTC  650

seq1  ATTCATTCATTCATCCATCCATCTAGCCACTCATTCATTTGATATATTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTCATTCATCCATCCATCTAGCCACTCATTCATTTGATATATTTT  700

seq1  AAAGACCTTGCCAACACCAAGCACCCACGAAGTGCTGGAGTTTGACTAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACCTTGCCAACACCAAGCACCCACGAAGTGCTGGAGTTTGACTAAC  750

seq1  CGGATAAGTAGCCAAACCCTTTATCTATGCAGAGGATGCTGGAGTAGCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATAAGTAGCCAAACCCTTTATCTATGCAGAGGATGCTGGAGTAGCAG  800

seq1  ATGGTGACACACCCTGGAGACAGACTGGGGAGAAATCTAGAATGAGAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGACACACCCTGGAGACAGACTGGGGAGAAATCTAGAATGAGAATT  850

seq1  GTTGGAGCCTTAAATGGGGGAGGGATACCCAGGGAAGGATGCTCTGGGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAGCCTTAAATGGGGGAGGGATACCCAGGGAAGGATGCTCTGGGAT  900

seq1  ATTATAGATAAAAAAGACC-TGCGAAAGGTGAGGAGCCATATTTACCGTG  949
      ||||||||| ||||||||| ||||||| ||||||||||||||||||||||
seq2  ATTATAGAT-AAAAAGACCTTGCGAAA-GTGAGGAGCCATATTTACCGTG  948

seq1  CCATTTAGTGGGTGAATGCCCTGCAGGGGGACAGAGGACATGGGCAATAT  999
      ||||||||||||||||||| ||||| ||||||||||||||| ||||||||
seq2  CCATTTAGTGGGTGAATGCTCTGCA-GGGGACAGAGGACAT-GGCAATAT  996

seq1  TGTGGCTTTGAGACAGGAGCGTGACAGCTTTTACCCAGAGAGCCAGTATG  1049
      ||| ||||||||||| ||||||||||||||||| ||||||||||||||||
seq2  TGT-GCTTTGAGACA-GAGCGTGACAGCTTTTA-CCAGAGAGCCAGTATG  1043

seq1  GGCAGGGTCAAGTTCTG-TCACAGTCAAGTGTCAAGTTAGAGGTGCACAG  1098
      |||| |||||||||||| |||||||| ||||||||| |||||||||||||
seq2  GGCA-GGTCAAGTTCTGTTCACAGTC-AGTGTCAAG-TAGAGGTGCACAG  1090

seq1  GTGGGTCAGCCTGTGGCAAGAGGAACCCCCAGGAATCTGAACTTCCCTAG  1148
        || | ||| ||| ||||||||| |||| ||  |||||| |||  ||||
seq2  TGGGTTTAGCTTGT-GCAAGAGGATCCCCAAG--ATCTGACCTT-TCTAG  1136

seq1  CAATGTCAGGCAAGACATGGAGAGAAACATTGAGCAGAGCCGAGGACAGG  1198
      | ||||   || ||||||||| |||| || |||||| ||  |||||||||
seq2  C-ATGTTCAGCCAGACATGGA-AGAATCA-TGAGCA-AGTTGAGGACAGG  1182

seq1  CTCTGCAGCGGAG  1211
      |||||||||||||
seq2  CTCTGCAGCGGAG  1195

seq1: chr7_38355721_38356925
seq2: B6Ng01-084H03.g_69_1260 (reverse)

seq1  TATAATCATAAAAATCCTTCAGTGTTTGCAAGGAAGCAT-TAACGAGGTA  49
      ||||||||||||    |||||  |||||| | ||||| | |||||||   
seq2  TATAATCATAAA---TCTTCA--GTTTGCCAAGAAGCCTATAACGAG---  42

seq1  TATTAAATTTTAAGGAGACTGCTAGTAGCAGCTTTGCAAACCTCAGAGAT  99
       ||| |||||||  ||| |||||||||||||  ||||||||  |||| | 
seq2  AATTCAATTTTAGAGAG-CTGCTAGTAGCAGGCTTGCAAACTCCAGA-AA  90

seq1  TAAAATTTAACCCTTAGTTATGAAACACTGATTTTTTTTTGTCATCTGGT  149
      |||||||||||||| |||||||||||  ||| ||||||||||||||||||
seq2  TAAAATTTAACCCTAAGTTATGAAACCATGA-TTTTTTTTGTCATCTGGT  139

seq1  AATCGTGTCCATCCTATACCTGGTCTCCTGATGGACTCTTGGTGGACTTT  199
       ||||||||||||||||| || ||||||||||| ||||||| ||||||||
seq2  -ATCGTGTCCATCCTATA-CTTGTCTCCTGATGAACTCTTGATGGACTTT  187

seq1  CCAGGCTGTTGGTGTTTGGATGGAGGTAGACTTATACAATATAATGGTTT  249
      ||||||||||| || |||||| || |||||||||||||||||||||||||
seq2  CCAGGCTGTTGATG-TTGGAT-GAAGTAGACTTATACAATATAATGGTTT  235

seq1  CTCCCTGTCTTTTGGCTGGCAAGACAGTCGAGCCAGGGACTTTGATTGGC  299
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTCCCTGTCTTTTGGCTGGCAAGACAGTCGAGCCAGGGACTTTGA-TGGC  284

seq1  CTTAAAGAGATCTTTTGCAGAACTAGATAAAAACCAATTAAAAT-CCAGG  348
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTTAAAGAGATCTTTTGCAGAACTAGATAAAAACCAATTAAAATCCCAGG  334

seq1  GACGATGCCATAGGAAGTCTCAACCAAGTTTGAGTGTTTTTAATAACTTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGATGCCATAGGAAGTCTCAACCAAGTTTGAGTGTTTTTAATAACTTT  384

seq1  -CCCAATATACAGTAATGAGTACAAATTGTACCTGCAGTATGTGTTTTGC  447
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAATATACAGTAATGAGTACAAATTGTACCTGCAGTATGTGTTTTGC  434

seq1  AGAAAATTAGAACTCAAAGCTGTTTGTTAAACACAAACACTCAAAGCTAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATTAGAACTCAAAGCTGTTTGTTAAACACAAACACTCAAAGCTAG  484

seq1  TCTGCGTAATTGTCTTTAATAGTCCCCTCTGCCCCCTCCACAGCCTGTGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCGTAATTGTCTTTAATAGTCCCCTCTGCCCCCTCCACAGCCTGTGC  534

seq1  AGAACAGCAAACACCAGACTGTTCTAGGTGGGTCAGAGGGCAGGCCCTCC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGCAAACACCAGACTGTTCTAGGTGGGTCAGAGGGCAGGCCCTCC  584

seq1  TCCACATCAGAGCCTGCAGGGTGCTTAGCTTGGAAAGCAATGAGCCCATG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATCAGAGCCTGCAGGGTGCTTAGCTTGGAAAGCAATGAGCCCATG  634

seq1  CCTGGAGTCCTTCTGTTTTCAAACATGCCTTCCCCTGAAGGAGTCCAGGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGTCCTTCTGTTTTCAAACATGCCTTCCCCTGAAGGAGTCCAGGT  684

seq1  TCATTTCCTGCTTTTAGAATGGATTTGTGTGCATCTCTTTAGAGCCCAGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCCTGCTTTTAGAATGGATTTGTGTGCATCTCTTTAGAGCCCAGT  734

seq1  CTTTCAATGTATTGGCCAGCTAGAATGCCCAGAGACCCTGTGTTTAACCC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAATGTATTGGCCAGCTAGAATGCCCAGAGACCCTGTGTTTAACCC  784

seq1  TAGCCAAAACCGTGGGACCAAGAAACTTCACTGGGGGACTTGTAGGGCCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAAAACCGTGGGACCAAGAAACTTCACTGGGGGACTTGTAGGGCCA  834

seq1  GAGCTATCAACTGTGGGCAAGTACATTTAGCAGTGGAGTCTGCTGTTTGC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTATCAACTGTGGGCAAGTACATTTAGCAGTGGAGTCTGCTGTTTGC  884

seq1  TGGGCTGCCTTCCAGATAGACTAGACAGTGTGTGACATAGGGGTCTCCAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTGCCTTCCAGATAGACTAGACAGTGTGTGACATAGGGGTCTCCAG  934

seq1  TGCGAGAGTAGTAGCATGGGTCTTAGCAAGAGTAATGAAGTGGGAGATCA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGAGAGTAGTAGCATGGGTCTTAGCAAGAGTAATGAAGTGGGAGATCA  984

seq1  GTTACAGGAGGGAGAGGGACTTCAGTCCAGTGTAGCCCTTGAATGATGGC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAGGAGGGAGAGGGACTTCAGTCCAGTGTAGCCCTTGAATGATGGC  1034

seq1  ATGGTCAACTCCGCACATGCTCACACACCCTCTCAGAGGGGCATGTTCAC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCAACTCCGCACATGCTCACACACCCTCTCAGAGGGGCATGTTCAC  1084

seq1  CTGCAGTTAAAAACAACTTCCAAGTTTGTCATCTTCCCTTTTGAAGACTG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGTTAAAAACAACTTCCAAGTTTGTCATCTTCCCTTTTGAAGACTG  1134

seq1  GTCAGGAGCAAGGTTGTCATGGATATTCTAGAGTTTACTCAACCAACCTA  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGAGCAAGGTTGTCATGGATATTCTAGAGTTTACTCAACCAACCTA  1184

seq1  CTGAATTC  1205
      ||||||||
seq2  CTGAATTC  1192