BAC Information

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BAC

Clone NameB6Ng01-085F14
Chromosome6 (Build37)7 (Build37)
Map Location 47,347,229 - 47,347,874114,519,112 - 114,520,180
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCntnap2, Rbpsuh-rs3, LOC622745, LOC100041064, LOC100041078
Downstream geneA930035D04Rik, Cul1, Ezh2, Rn4.5s, EG384379, Pdia4, LOC100041154, Zfp786, Zfp398, Zfp282, Zfp212, A230106D06Rik, AI894139, LOC623601, Zfp777, Zfp746, LOC665990, Krba1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085F14.bB6Ng01-085F14.g
ACCDH899044DH899045
length8011,055
definitionDH899044|Mus musculus domesticus DNA, BAC clone: B6Ng01-085F14, 5' end.DH899045|Mus musculus domesticus DNA, BAC clone: B6Ng01-085F14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(47,347,229 - 47,347,874)(114,519,112 - 114,520,180)
sequence
gaattcaagggaacataaacatttagttcaggtaccaaactccatttatc
agtaacactgtgaacagagatgagtgagagagaagcctgcaagatgctcc
tgtcacatcttcaaaaacaaaaaaatgtgtgtgtgtgtggggggggggta
atatgacaattgactaaaaacgtcaacattgaactaatcccaaattgtta
tgtatgagaaaggagaaaatgaaggaaggaaacagtacaaaaaaaaaaat
gggaggaagcactttggagggctggactcgctggctgacatttcttctgg
aaaaatgcttgtgtgtttgtaaaagacttacagtaaggtcagtgtgcaac
caaacccagcacagagacatgtgaccttctgatgtcccacccctccctgc
cccagatgactccctacatgccctttaaggggctattctagttacatatt
ctcctgtatagcattttaatctttctatatgccatgccctttagtgactt
tttcttaaatgacttttaatgaaaaatttcaatcatacataaaagttgag
agaatattacagagaacactgatgtgctcaccgcctagactggataggga
ggagtttccaatcctttgtttaattccgtatcatttgtctctctgtcttc
tatattttatattttgtattacctactgaagcaaattgcttagtgctcta
aacactgtgagccccgccccccccgggtaaaattcatagacaataaaatg
taagtgatctttactatatttttctcactaattctaacataaaaccccag
g
gaattctttatccagccttagtttccattcatggtccactgttatgttct
ggaagtatttctgcatattttcaaaaaaaaaaaaaaggcctagaaaatgt
ttagcagctgagttgtgagacagagctttaatgtcactttgtcagtggct
ctcccttgcagctaacttcactatgtcatggaaagcaagctctacttccg
cggtggtcaggtttggctgcatattgaggccaacctgggctgtatgagac
tctgtcccagggtcagagaaacccttaaggattccagcagaaagaagaat
atcagaaacctagcaatgactgggctgtaacctagaccagttaaaccaaa
gtctcaggggtggtggtacctgggattggtgttgccttacatttcctggt
tgaggctgatttacagtcagatagaggaaaacctgttataaccatagacc
acggcagaatccactgaactcagctcagctcatgttcccttactctaaaa
atatttttaaagtgacttaaaaacccagaggaatttgactgctgcctttg
gtatagctactacccatatgagttgattcttaacttacttttgataatat
tttgccaagtttttattttgaggacttttttctttctctctctctctctc
tctctctctctctctctctctttctttctttctttctttttttggttttt
tgagacaaggtttctctgtatagctcaggctgtcctggagctcactctgt
agaccaggctggcctcgaactcagaaatccacctgcctctacctcccagg
tctggaattaaaggtgtgcgccaccactgccgggccttgaggacttttat
gagtatcagaagacttgattgtgtcatccactttaaggtgaaaaaaaaaa
acaaccacattaaaagctaaatgtgtgacttacatcgtgtattgatatcc
cagctctagtagatagagacacagatcaggagtccatggccagccttagc
tcttatggattgaggccagtctgggctttatgagaccttgcttcgaatca
gagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_47347229_47347874
seq2: B6Ng01-085F14.b_190_841 (reverse)

seq1  CATGGGG-TTTCTGTTAGAATTAGTTGGAAAAATATAGTTAAGATCACTT  49
      | ||||| ||| |||||||||||||  |||||||||||| ||||||||||
seq2  CCTGGGGTTTTATGTTAGAATTAGTGAGAAAAATATAGTAAAGATCACTT  50

seq1  ACATTTTATTGTCTCTAAATTTTAACCCGGGGGGGCGGGGCTC-CAGTGT  98
      |||||||||||||| | ||||||| || ||||||||||||||| ||||||
seq2  ACATTTTATTGTCTATGAATTTTACCCGGGGGGGGCGGGGCTCACAGTGT  100

seq1  TTAGAGC-CTAAGCAATTTGCTTCAGTAGGT-ATACAAAATAT-AAATAT  145
      ||||||| ||||||||||||||||||||||| ||||||||||| ||||||
seq2  TTAGAGCACTAAGCAATTTGCTTCAGTAGGTAATACAAAATATAAAATAT  150

seq1  AGAAGACAGAGAGACAAATGATACGGAATTAAAC-AAGGATTGGAAACTC  194
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AGAAGACAGAGAGACAAATGATACGGAATTAAACAAAGGATTGGAAACTC  200

seq1  CTCCCTATCCAGTCTAGGCGGTGAGCACATCAGTGTTCTCTGTAATATTC  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTATCCAGTCTAGGCGGTGAGCACATCAGTGTTCTCTGTAATATTC  250

seq1  TCTCAACTTTTATGTATGATTGAAATTTTTCATTAAAAGTCATTTAAGAA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAACTTTTATGTATGATTGAAATTTTTCATTAAAAGTCATTTAAGAA  300

seq1  AAAGTCACTAAAGGGCATGGCATATAGAAAGATTAAAATGCTATACAGGA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCACTAAAGGGCATGGCATATAGAAAGATTAAAATGCTATACAGGA  350

seq1  GAATATGTAACTAGAATAGCCCCTTAAAGGGCATGTAGGGAGTCATCTGG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATGTAACTAGAATAGCCCCTTAAAGGGCATGTAGGGAGTCATCTGG  400

seq1  GGCAGGGAGGGGTGGGACATCAGAAGGTCACATGTCTCTGTGCTGGGTTT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGGAGGGGTGGGACATCAGAAGGTCACATGTCTCTGTGCTGGGTTT  450

seq1  GGTTGCACACTGACCTTACTGTAAGTCTTTTACAAACACACAAGCATTTT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCACACTGACCTTACTGTAAGTCTTTTACAAACACACAAGCATTTT  500

seq1  TCCAGAAGAAATGTCAGCCAGCGAGTCCAGCCCTCCAAAGTGCTTCCTCC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAAGAAATGTCAGCCAGCGAGTCCAGCCCTCCAAAGTGCTTCCTCC  550

seq1  CATTTTTTTTTTTGTACTGTTTCCTTCCTTCATTTTCTCCTTTCTCATAC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTTTTTTTGTACTGTTTCCTTCCTTCATTTTCTCCTTTCTCATAC  600

seq1  ATAACAATTTGGGATTAGTTCAATGTTGACGTTTTTAGTCAATTGTCATA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAATTTGGGATTAGTTCAATGTTGACGTTTTTAGTCAATTGTCATA  650

seq1  TT  646
      ||
seq2  TT  652

seq1: chr7_114519112_114520180
seq2: B6Ng01-085F14.g_69_1123

seq1  GAATTCTTTATCCAGCCTTAGTTTCCATTCATGGTCCACTGTTATGTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATCCAGCCTTAGTTTCCATTCATGGTCCACTGTTATGTTCT  50

seq1  GGAAGTATTTCTGCATATTTTCAAAAAAAAAAAAAAGGCCTAGAAAATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTATTTCTGCATATTTTCAAAAAAAAAAAAAAGGCCTAGAAAATGT  100

seq1  TTAGCAGCTGAGTTGTGAGACAGAGCTTTAATGTCACTTTGTCAGTGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAGCTGAGTTGTGAGACAGAGCTTTAATGTCACTTTGTCAGTGGCT  150

seq1  CTCCCTTGCAGCTAACTTCACTATGTCATGGAAAGCAAGCTCTACTTCCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTTGCAGCTAACTTCACTATGTCATGGAAAGCAAGCTCTACTTCCG  200

seq1  CGGTGGTCAGGTTTGGCTGCATATTGAGGCCAACCTGGGCTGTATGAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGGTCAGGTTTGGCTGCATATTGAGGCCAACCTGGGCTGTATGAGAC  250

seq1  TCTGTCCCAGGGTCAGAGAAACCCTTAAGGATTCCAGCAGAAAGAAGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCCCAGGGTCAGAGAAACCCTTAAGGATTCCAGCAGAAAGAAGAAT  300

seq1  ATCAGAAACCTAGCAATGACTGGGCTGTAACCTAGACCAGTTAAACCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAAACCTAGCAATGACTGGGCTGTAACCTAGACCAGTTAAACCAAA  350

seq1  GTCTCAGGGGTGGTGGTACCTGGGATTGGTGTTGCCTTACATTTCCTGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAGGGGTGGTGGTACCTGGGATTGGTGTTGCCTTACATTTCCTGGT  400

seq1  TGAGGCTGATTTACAGTCAGATAGAGGAAAACCTGTTATAACCATAGACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCTGATTTACAGTCAGATAGAGGAAAACCTGTTATAACCATAGACC  450

seq1  ACGGCAGAATCCACTGAACTCAGCTCAGCTCATGTTCCCTTACTCTAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGCAGAATCCACTGAACTCAGCTCAGCTCATGTTCCCTTACTCTAAAA  500

seq1  ATATTTTTAAAGTGACTTAAAAACCCAGAGGAATTTGACTGCTGCCTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTTAAAGTGACTTAAAAACCCAGAGGAATTTGACTGCTGCCTTTG  550

seq1  GTATAGCTACTACCCATATGAGTTGATTCTTAACTTACTTTTGATAATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGCTACTACCCATATGAGTTGATTCTTAACTTACTTTTGATAATAT  600

seq1  TTTGCCAAGTTTTTATTTTGAGGACTTTTTTCTTTCTCTCTCTCTCTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCAAGTTTTTATTTTGAGGACTTTTTTCTTTCTCTCTCTCTCTCTC  650

seq1  TCTCTCTCTCTCTCTCTCTCTTTCTTTCTTTCTTTCTTTTTTTGGTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTTTCTTTCTTTCTTTCTTTTTTTGGTTTTT  700

seq1  TGAGACAAGGTTTCTCTGTATAGCTCAGGCTGTCCTGGAGCTCACTCTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACAAGGTTTCTCTGTATAGCTCAGGCTGTCCTGGAGCTCACTCTGT  750

seq1  AGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTACCTCCCAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTACCTCCCAGG  800

seq1  TTCTGGAATTAAAGGTGTGCGCCACCACTGCCGGGCCTTGAGGACTTTTA  850
       |||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  -TCTGGAATTAAAGGTGTGCGCCACCACTGCCGGGCCTTGAGGACTTTT-  848

seq1  ATGAGTATCAGAAGACTTGATTGTGTCCATCCACTTTTAAGGTTGAAAAA  900
      |||||||||||||||||||||||||| ||||||| ||||||||   ||||
seq2  ATGAGTATCAGAAGACTTGATTGTGT-CATCCAC-TTTAAGGT--GAAAA  894

seq1  AAAAAAACAACCACATTAAAAGCTAAATGTGGTGACATACATCGTGTATT  950
      |||||||||||||||||||||||||||||| ||||| |||||||||||||
seq2  AAAAAAACAACCACATTAAAAGCTAAATGT-GTGACTTACATCGTGTATT  943

seq1  TATAATCCCAGCTCTTAGTAGATAGAGACACCAGATCAGGAGTTCAAGGC  1000
       || |||||||||| ||||||||||||||| |||||||||||| || |||
seq2  GAT-ATCCCAGCTC-TAGTAGATAGAGACA-CAGATCAGGAGTCCATGGC  990

seq1  CAGCCTTAGCTTCTTAGTGAATTTGAGGCCAGTCTGGGCTTTATGAGACC  1050
      |||||||||| |||||  ||  ||||||||||||||||||||||||||||
seq2  CAGCCTTAGC-TCTTATGGA--TTGAGGCCAGTCTGGGCTTTATGAGACC  1037

seq1  TTGTCTCAGAATCAGAGAA  1069
      ||| ||  |||||||||||
seq2  TTG-CTTCGAATCAGAGAA  1055