BAC Information

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BAC

Clone NameB6Ng01-085H05
Chromosome7 (Build37)
Map Location 140,223,790 - 140,367,638
singlet/doubletdoublet
Overlap geneCtbp2
Upstream geneCpxm2, 4631426J05Rik, LOC100043682, LOC100043683, Oat, Nkx1-2, 2310007H09Rik, A930008G19Rik, 2010208K18Rik, C430003P19Rik, Zranb1
Downstream geneLOC668747, 4930404H21Rik, LOC100043237, 2700050L05Rik, Mmp21, Uros, Bccip, Dhx32, LOC100043695, Fank1, Adam12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085H05.bB6Ng01-085H05.g
ACCDH899118DH899119
length1,163354
definitionDH899118|Mus musculus domesticus DNA, BAC clone: B6Ng01-085H05, 5' end.DH899119|Mus musculus domesticus DNA, BAC clone: B6Ng01-085H05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(140,223,790 - 140,224,959)(140,367,285 - 140,367,638)
sequence
gaattcaatttccagaaaccacatggtggctcacaaccatctgtaatggg
atcggatactctcctctggtgtgtctgaagtgtactcatataaataaaat
aaatctttaaaaataaaagtgaacgcaagtctaatgaaatagcaaaataa
aatacttcttgttaagcttgaactatttgcccatagaaaaattactagtt
ctaatataacttcgatttagttaaagtgaacacgtatgaagccataatct
gtgtctagtaaaagcaattttagaggttagttacaaattacaacaataaa
acatttttaaagcgtcttaagatcttgatttgtttttgttttaaacacgc
ctgcctcttgacttcagtttgaccccacagaagtccctgactctggactg
tcccaatttggcaacactctgtcccataaaagacttcagtgggttacctc
ttgacacggtgaggtccaaaacacatgtctcagtacctgcatcttatagc
ctttatctgcttatcaaaaaagcaatggaaaacaagaccagtcccaccct
accccgtggtcaacctgtcatgctgggagcaagattagcccacgggaaac
attttacccagcgatgaggctcttgatccagcagagggcactgctcaccc
tgcctagacatccccagactgcaaagctgggatatctttgcctgggtctc
aaatgtgaactccataagaacccagagaaaatacgtcaaatacccttgat
ggaaaggcctgagcactgtgtgtcttaggaagcaagagaggcagaacgca
cctggcctcccttctagccatggatgctgaatggtggggatgtgactccc
tccccattgtctcacacctcccctgagagccaaggtctcccccctcccgc
acgcgcacacacacacacacacacacacacacagggcagcccaggaaagt
ggtccaagagccagtgagtttcctgacccacagtgtgaggttttgtcccg
caaaggggcacaaactgccctaagggtaattttcctttatgcttgcaatc
tcattcagagatatgtgaatcctgttgatggacgaatgggaacacttgca
gtggagaggatttaagacagaataaaggagtacacagttctcccaagccc
tgatagagtttcc
cacaggcatcagaaagcagactcccagtggtgaaggcccctctcatgagc
tgaattcagaccctttgaccctggattcacaaagtgttgtagacctgtga
ctttggtgaatgtccacctcccctgaaggactatgcaccccacagggcaa
gagtcagtctagctttgtttacatcttttcttggagtgtaaagctgccac
gacatttttaaattgcccaataaatatgtgtctgtgggtacatgggtctg
tgtggcacacctgcaaatgtataacctgtgtgtggaagccagaggacaac
atcaacaggcactgtccacagcagggtttttgtttggtgtgtgtttgtgt
gtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_140223790_140224959
seq2: B6Ng01-085H05.b_47_1209

seq1  GAATTCAATTTCCAGAAACCACATGGTGGCTCACAACCATCTGTAATGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTTCCAGAAACCACATGGTGGCTCACAACCATCTGTAATGGG  50

seq1  ATCGGATACTCTCCTCTGGTGTGTCTGAAGTGTACTCATATAAATAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGGATACTCTCCTCTGGTGTGTCTGAAGTGTACTCATATAAATAAAAT  100

seq1  AAATCTTTAAAAATAAAAGTGAACGCAAGTCTAATGAAATAGCAAAATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTTAAAAATAAAAGTGAACGCAAGTCTAATGAAATAGCAAAATAA  150

seq1  AATACTTCTTGTTAAGCTTGAACTATTTGCCCATAGAAAAATTACTAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTTCTTGTTAAGCTTGAACTATTTGCCCATAGAAAAATTACTAGTT  200

seq1  CTAATATAACTTCGATTTAGTTAAAGTGAACACGTATGAAGCCATAATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATATAACTTCGATTTAGTTAAAGTGAACACGTATGAAGCCATAATCT  250

seq1  GTGTCTAGTAAAAGCAATTTTAGAGGTTAGTTACAAATTACAACAATAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTAGTAAAAGCAATTTTAGAGGTTAGTTACAAATTACAACAATAAA  300

seq1  ACATTTTTAAAGCGTCTTAAGATCTTGATTTGTTTTTGTTTTAAACACGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTTAAAGCGTCTTAAGATCTTGATTTGTTTTTGTTTTAAACACGC  350

seq1  CTGCCTCTTGACTTCAGTTTGACCCCACAGAAGTCCCTGACTCTGGACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCTTGACTTCAGTTTGACCCCACAGAAGTCCCTGACTCTGGACTG  400

seq1  TCCCAATTTGGCAACACTCTGTCCCATAAAAGACTTCAGTGGGTTACCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAATTTGGCAACACTCTGTCCCATAAAAGACTTCAGTGGGTTACCTC  450

seq1  TTGACACGGTGAGGTCCAAAACACATGTCTCAGTACCTGCATCTTATAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACACGGTGAGGTCCAAAACACATGTCTCAGTACCTGCATCTTATAGC  500

seq1  CTTTATCTGCTTATCAAAAAAGCAATGGAAAACAAGACCAGTCCCACCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATCTGCTTATCAAAAAAGCAATGGAAAACAAGACCAGTCCCACCCT  550

seq1  ACCCCGTGGTCAACCTGTCATGCTGGGAGCAAGATTAGCCCACGGGAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCGTGGTCAACCTGTCATGCTGGGAGCAAGATTAGCCCACGGGAAAC  600

seq1  ATTTTACCCAGCGATGAGGCTCTTGATCCAGCAGAGGGCACTGCTCACCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACCCAGCGATGAGGCTCTTGATCCAGCAGAGGGCACTGCTCACCC  650

seq1  TGCCTAGACATCCCCAGACTGCAAAGCTGGGATATCTTTGCCTGGGTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAGACATCCCCAGACTGCAAAGCTGGGATATCTTTGCCTGGGTCTC  700

seq1  AAATGTGAACTCCATAAGAACCCAGAGAAAATACGTCAAATACCCTTGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGAACTCCATAAGAACCCAGAGAAAATACGTCAAATACCCTTGAT  750

seq1  GGAAAGGCCTGAGCACTGTGTGTCTTAGGAAGCAAGAGAGGCAGAAGGCA  800
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GGAAAGGCCTGAGCACTGTGTGTCTTAGGAAGCAAGAGAGGCAGAACGCA  800

seq1  CCTGGCCTCCCTTCTAGCCATGGATGCTGAATGGT-GGGATGTGACTCCC  849
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CCTGGCCTCCCTTCTAGCCATGGATGCTGAATGGTGGGGATGTGACTCCC  850

seq1  TCCCCATTGTCTCACACCTCCCCTGAGAGCCAAGGTCTCCCCCCTCCCGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCATTGTCTCACACCTCCCCTGAGAGCCAAGGTCTCCCCCCTCCCGC  900

seq1  ACGCGCACACACACACACACACACACACACACAGGGCAGGCCAAGGAAAG  949
      |||||||||||||||||||||||||||||||||||||| ||| |||||| 
seq2  ACGCGCACACACACACACACACACACACACACAGGGCA-GCCCAGGAAA-  948

seq1  GTGGTCCAAGAGCCAGTGAGTTTCCTGACCCACAGTGTGAGGTTTTGTCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCCAAGAGCCAGTGAGTTTCCTGACCCACAGTGTGAGGTTTTGTCC  998

seq1  CGCAAAGGGGCACAAACTGCCCTAAGGGGTAATTTTCCTTTATGCTTGCA  1049
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CGCAAAGGGGCACAAACTGCCCTAA-GGGTAATTTTCCTTTATGCTTGCA  1047

seq1  ATTCTCATTCAGAGATATGTGAATCCTGGTGATGGACG-ATGGGAACAAC  1098
      | |||||||||||||||||||||||||| ||||||||| |||||||| ||
seq2  A-TCTCATTCAGAGATATGTGAATCCTGTTGATGGACGAATGGGAAC-AC  1095

seq1  TTGGCAGT-GAGAGGATTTAAGACAGAATAAATAGGAGGGTACACAGTTC  1147
      || ||||| ||||||||||||||||||||||  ||||  |||||||||||
seq2  TT-GCAGTGGAGAGGATTTAAGACAGAATAA--AGGA--GTACACAGTTC  1140

seq1  TCCACAAG-CCTGATAGAGTTTCC  1170
      ||| |||| |||||||||||||||
seq2  TCC-CAAGCCCTGATAGAGTTTCC  1163

seq1: chr7_140367285_140367638
seq2: B6Ng01-085H05.g_77_430 (reverse)

seq1  ACACACACAAACACACACCAAACAAAAACCCTGCTGTGGACAGTGCCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACAAACACACACCAAACAAAAACCCTGCTGTGGACAGTGCCTGT  50

seq1  TGATGTTGTCCTCTGGCTTCCACACACAGGTTATACATTTGCAGGTGTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTTGTCCTCTGGCTTCCACACACAGGTTATACATTTGCAGGTGTGC  100

seq1  CACACAGACCCATGTACCCACAGACACATATTTATTGGGCAATTTAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGACCCATGTACCCACAGACACATATTTATTGGGCAATTTAAAAA  150

seq1  TGTCGTGGCAGCTTTACACTCCAAGAAAAGATGTAAACAAAGCTAGACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCGTGGCAGCTTTACACTCCAAGAAAAGATGTAAACAAAGCTAGACTG  200

seq1  ACTCTTGCCCTGTGGGGTGCATAGTCCTTCAGGGGAGGTGGACATTCACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTGCCCTGTGGGGTGCATAGTCCTTCAGGGGAGGTGGACATTCACC  250

seq1  AAAGTCACAGGTCTACAACACTTTGTGAATCCAGGGTCAAAGGGTCTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCACAGGTCTACAACACTTTGTGAATCCAGGGTCAAAGGGTCTGAA  300

seq1  TTCAGCTCATGAGAGGGGCCTTCACCACTGGGAGTCTGCTTTCTGATGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTCATGAGAGGGGCCTTCACCACTGGGAGTCTGCTTTCTGATGCC  350

seq1  TGTG  354
      ||||
seq2  TGTG  354