BAC Information

Click to search

BAC

Clone NameB6Ng01-086G06
Chromosome10 (Build37)7 (Build37)
Map Location 129,184,574 - 129,185,37333,220,576 - 33,221,099
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneWibg, LOC622655, Mmp19, 1110012D08Rik, Dnajc14, Ormdl2, 1110005A23Rik, Gdf11, Cd63, Rdh5, Bloc1s1, Itga7, Mettl7b, Olfr9, Olfr763, EG622733, EG546487, Olfr765, Olfr768, Olfr769, Olfr770, Olfr771, Olfr772, Olfr773-ps1, LOC624925, Olfr774, Olfr1518, Olfr776, Olfr777, Olfr778-ps1, LOC544749, Olfr780, Olfr781, Olfr782, Olfr783-ps1, Olfr784, EG546488, Olfr786, Olfr787, Olfr788, Olfr789-ps1, Olfr790, Olfr791, Olfr792, GA_x5J8B7W6HFP-3168293-3169194, Olfr794, GA_x5J8B7W6HFP-3198834-3199739, Olfr796, GA_x5J8B7W6HFP-3231749-3230798, Olfr798, Olfr799, Olfr800, Smt3h2-ps3, Olfr801, Olfr802, Olfr803, Olfr804, Olfr805, Olfr806
Downstream geneOlfr807, Olfr808, Olfr809, Olfr810, Olfr811, Olfr812, Olfr813, Olfr814, Olfr815, Olfr816, Olfr1544-ps1, Olfr817-ps1, Olfr818, LOC100043200, Olfr247, LOC100043203, Olfr820, Olfr821, Olfr822, Olfr1542-ps1, Olfr823, LOC382471, Olfr824, LOC672405, Olfr825, Olfr826, Olfr827, Neurod4, 5830405N20Rik, EG625068, LOC100043719, EG623734, EG625109, EG625131
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086G06.bB6Ng01-086G06.g
ACCDH899803DH899804
length800975
definitionDH899803|Mus musculus domesticus DNA, BAC clone: B6Ng01-086G06, 5' end.DH899804|Mus musculus domesticus DNA, BAC clone: B6Ng01-086G06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(129,184,574 - 129,185,373)(33,220,576 - 33,221,099)
sequence
gaattcaatcacaatgttgaacaagaatgatggtgaatagaagtgtcttg
ttcctgatatcagaaaaatattttcagcattagtcagtccatttagtgta
atgttcactgtgggtctgtcatatgcatttttgtaaccttctattcttag
atatttttaaaatttttatcataaaatatgtaaaattttgtcaaaggggt
tttcttcatctattgagataactaagtgatttttatctttgatttaattc
atgtaatattttgtgtgtgtaaaactccgttttactctgtagaataaaac
aaaggcaaaataatttgatcttttaaatgtattaaatgcattttttcttc
agattttgtaaagggattttgactttatcttcatcagaagaattgatcta
ttgttcacagtgtccttacttattagtgtatttgtgactttgtagttcag
tcagatgccgtaaaaatggaaatcagttgtgcatgaagggacatgaagaa
gaagattactataaatttgagaagtccttaagattaaatagggaattcaa
accctttcagctaaagtactaaaggagctgaagggctgtgcagccccata
ggacaaacaacaatatgaacttaccagtaccccttagagctccctgggac
taaaccaccaaccaaagacagcacatggtaggactcatggctctagctgc
atatgtagcagaagatggacgaatcggtcatcaatgggaggagaggccct
tggtcctataaaggttctatgccccagtataggggaatgccagggccagg

gaattcctgatctttccaagacttttatcatcaatgggtgttggatcttg
ttgaatgctttttccgcatctaaggagatgatcatgtggtttttgtcttt
gtaattgtttatataatggattacgttgatggatttccctatattaaatt
atccctgcatccctggaataaaaccaacttggtcaggatggatgattgct
ttaatgtgttctttgattcggctagggagaattttattaagtatttttgt
atcgatattcataagggaaattggtctgaagttctctattttggatcttt
ctgtggtttaggtatcagagtaattgtggcttcatagaatgagttgggta
gagtaccttctacttctattttgtggaatagtttgtacagaactggaatt
agatcttctttgaaggtctgatagaactctgcactaaacccatctggtcc
tgggcttttattggctgggagactattaatgactgcttctatttctttag
gggatatgggactgtttagattgtttacttgatcctgatttaactttggt
acctggtatctgtctagaaatttgtccatttcatccaggttttccagttt
tgttgagtatagccttttgtagaaggatctgatggtggtttggatttctt
caggatctgctgttatggctcccttttcatttctgatttcgttaattaca
atgctgtccctgtgccctctagtgagtctatctaagggtttatctatctt
gttgattttctcaaagaaccaactcctcatttggttaattctttgaatag
ttcttcttgtttccacttggttgatttcacccccgtgtttgattatttcc
tgccgtctactcctcttgggtgaatattctccctttttttctagagcttt
tagatgtgttgtcaagctgctagtgtgtgctctctccagtttctttttga
aggcactcagagctatgagtttccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_129184574_129185373
seq2: B6Ng01-086G06.b_46_845

seq1  GAATTCAATCACAATGTTGAACAAGAATGATGGTGAATAGAAGTGTCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCACAATGTTGAACAAGAATGATGGTGAATAGAAGTGTCTTG  50

seq1  TTCCTGATATCAGAAAAATATTTTCAGCATTAGTCAGTCCATTTAGTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGATATCAGAAAAATATTTTCAGCATTAGTCAGTCCATTTAGTGTA  100

seq1  ATGTTCACTGTGGGTCTGTCATATGCATTTTTGTAACCTTCTATTCTTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCACTGTGGGTCTGTCATATGCATTTTTGTAACCTTCTATTCTTAG  150

seq1  ATATTTTTAAAATTTTTATCATAAAATATGTAAAATTTTGTCAAAGGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTTAAAATTTTTATCATAAAATATGTAAAATTTTGTCAAAGGGGT  200

seq1  TTTCTTCATCTATTGAGATAACTAAGTGATTTTTATCTTTGATTTAATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCATCTATTGAGATAACTAAGTGATTTTTATCTTTGATTTAATTC  250

seq1  ATGTAATATTTTGTGTGTGTAAAACTCCGTTTTACTCTGTAGAATAAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAATATTTTGTGTGTGTAAAACTCCGTTTTACTCTGTAGAATAAAAC  300

seq1  AAAGGCAAAATAATTTGATCTTTTAAATGTATTAAATGCATTTTTTCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCAAAATAATTTGATCTTTTAAATGTATTAAATGCATTTTTTCTTC  350

seq1  AGATTTTGTAAAGGGATTTTGACTTTATCTTCATCAGAAGAATTGATCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTGTAAAGGGATTTTGACTTTATCTTCATCAGAAGAATTGATCTA  400

seq1  TTGTTCACAGTGTCCTTACTTATTAGTGTATTTGTGACTTTGTAGTTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCACAGTGTCCTTACTTATTAGTGTATTTGTGACTTTGTAGTTCAG  450

seq1  TCAGATGCCGTAAAAATGGAAATCAGTTGTGCATGAAGGGACATGAAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATGCCGTAAAAATGGAAATCAGTTGTGCATGAAGGGACATGAAGAA  500

seq1  GAAGATTACTATAAATTTGAGAAGTCCTTAAGATTAAATAGGGAATTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATTACTATAAATTTGAGAAGTCCTTAAGATTAAATAGGGAATTCAA  550

seq1  ACCCTTTCAGCTAAAGTACTAAAGGAGCTGAAGGGCTGTGCAGCCCCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTTCAGCTAAAGTACTAAAGGAGCTGAAGGGCTGTGCAGCCCCATA  600

seq1  GGACAAACAACAATATGAACTTACCAGTACCCCTTAGAGCTCCCTGGGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAACAACAATATGAACTTACCAGTACCCCTTAGAGCTCCCTGGGAC  650

seq1  TAAACCACCAACCAAAGACAGCACATGGTAGGACTCATGGCTCTAGCTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCACCAACCAAAGACAGCACATGGTAGGACTCATGGCTCTAGCTGC  700

seq1  ATATGTAGCAGAAGATGGACGAATCGGTCATCAATGGGAGGAGAGGCCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTAGCAGAAGATGGACGAATCGGTCATCAATGGGAGGAGAGGCCCT  750

seq1  TGGTCCTATAAAGGTTCTATGCCCCAGTATAGGGGAATGCCAGGGCCAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCTATAAAGGTTCTATGCCCCAGTATAGGGGAATGCCAGGGCCAGG  800

seq1: chr7_33220576_33221099
seq2: B6Ng01-086G06.g_68_586 (reverse)

seq1  CTAAACATTCCCATATCCCCTAAAGAAATAGAATCAGTCATTAGTAGTCT  50
      ||||||| ||||||||||||||||||||||||| ||||||||| ||||||
seq2  CTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTCATTAATAGTCT  50

seq1  CCCAGCCAAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTAC  100
      ||||||| || |||||||||||||||||||||||||||||||||||||| 
seq2  CCCAGCC-AATAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTAT  99

seq1  CAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCATAAAGTATTCCACAA  150
      ||||||||||||||||||||||||||||||||| | ||| ||||||||||
seq2  CAGACCTTCAAAGAAGATCTAATTCCAGTTCTGTACAAACTATTCCACAA  149

seq1  AATAGAAGTAGATGGAACTCTACCCAACTCATTCTATGAAGCCACAATTA  200
      |||||||||||| || ||||||||||||||||||||||||||||||||||
seq2  AATAGAAGTAGAAGGTACTCTACCCAACTCATTCTATGAAGCCACAATTA  199

seq1  CTCTGATACCTAAACCACAGAAAGATCCAAAAAAGATAGAGAACTTCAGA  250
      |||||||||||||||||||||||||||||||    |||||||||||||||
seq2  CTCTGATACCTAAACCACAGAAAGATCCAAA----ATAGAGAACTTCAGA  245

seq1  CCAATTTCCCTTATGAATATAGATGCAAAAATCCTCAATAAAATTCTCGC  300
      |||||||||||||||||||| ||| ||||||| || |||||||||||| |
seq2  CCAATTTCCCTTATGAATATCGATACAAAAATACTTAATAAAATTCTCCC  295

seq1  TAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAG  350
      || ||||||| ||||||||||||||||||||||||||||||||||||| |
seq2  TAGCCGAATCAAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTTG  345

seq1  GTTTTATTCCAGGGATGCAGGGATGGTTTAATATTCGGAAATCCATCAAC  400
      ||||||||||||||||||||||||  ||||||||  ||||||||||||||
seq2  GTTTTATTCCAGGGATGCAGGGATAATTTAATATAGGGAAATCCATCAAC  395

seq1  GTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTC  450
      ||||||||||||||||||||   |||||||||||||||||||||||||||
seq2  GTAATCCATTATATAAACAATTACAAAGACAAAAACCACATGATCATCTC  445

seq1  GTTAGATGCGGAAAAAGCATTCGACAAGATCCAACACCCATTCATGATAA  500
       ||||||||||||||||||||| ||||||||||||||||||| |||||||
seq2  CTTAGATGCGGAAAAAGCATTCAACAAGATCCAACACCCATTGATGATAA  495

seq1  AAGTCTTGGAAAGATCAGGAATTC  524
      ||||||||||||||||||||||||
seq2  AAGTCTTGGAAAGATCAGGAATTC  519