BAC Information

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BAC

Clone NameB6Ng01-087G13
Chromosome7 (Build37)
Map Location 38,155,747 - 38,298,962
singlet/doubletdoublet
Overlap geneZfp536
Upstream geneTshz3, LOC100043874
Downstream geneLOC100043453, EG627844, C80913, Ccne1, 1600014C10Rik, Plekhf1, Pop4, LOC668519, LOC100043464, 1700010N08Rik, EG627975, EG625594, EG627983
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087G13.bB6Ng01-087G13.g
ACCDH900542DH900543
length1,1711,088
definitionDH900542|Mus musculus domesticus DNA, BAC clone: B6Ng01-087G13, 5' end.DH900543|Mus musculus domesticus DNA, BAC clone: B6Ng01-087G13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,297,590 - 38,298,962)(38,155,747 - 38,156,855)
sequence
gaattcccttcgcctttgaggctgagcagattgcaccgaatggcactcgt
tttccaagcaattcccaaggagaagtgccaggctgcagacacaccccttc
tactagcctctgagtttgtcatcccgagagtggctgattggagagaggtg
atccaatttatttcttgtatttaaagatagttagatagatagatagatag
atagatagatagatagatagatagatagtttttaccctcaaccttccctt
aatctatagatgtgaccagagtgtcatgctgagcttgcccccctcccctc
tgatttgcttcctggtaatgaaaggtcacagttgggtgagaaatggtatg
actgtgtagaagccaagataagtgacaaaaagagaagagtggccagtgta
cccagagactccgggctcccatctgcagagggacattgtccttgtctctt
attcttacaggggcagcatccttctgtggagacatagtctttctcctgca
ccaagactgaattccagacagccccaagcctgactctacccagcctaccc
ctccaaacatggcttccatgctgtatcccaaagctcccatcccagccctc
acatacaggacctgctcttgacccttcttctctaccttgtgatcataggt
tcagagtcctctaacactgttgatcatagggtcagagtcctctaacgctg
ttgacctcagctttagagtctggcgtctgaagaccttcacttctgtttgc
tccatcctcgcctaaacttgctgttcagcctctgcacggctcagtttctt
catctatgcaatgggatagtagtacttttctactccatggggatgcagtg
tcaataaagtcaaaccacacagagagagccaagcatactgggccaagcat
tcaatcccagcccctgggctaaggcagaaagatcatgagttcaaggtcaa
cctgagccacaaagtaagctttgtgtagcaaaacaaacaatttcccagaa
aggatccagtcagagcattcgaggctcaggacttgtacacaaccttagag
agtaaagtgtttacaagcgttgtctgctatgcttaatctcactctagatc
acagtcagcttgaagttcggacttctctgctgtcacttatgctctggaag
ccagctctctttcagtgtcct
gaattctttcctctgtccagggcattccatgttttcttttttttttctcc
cagaagacacagaaacctggatatataagttaaagaacacaacacttcag
gctgtttgcaactaattgaaaacaaaagtgtaaatatggcatgggccaaa
ggaaacacatctgtgtgccgaaggcagccagcaggccaccggtgggctcc
tggtgtcctcttggagccttggaggggcttcgctcagcttttcccacctc
atacggaggagcagcaaggagaagctgtagctaaggtttatggacagcaa
acctgggcaggactcggaaggcaacgtgaaccaaggaagcttgggctctt
cccagccctaccgagggcgcctgtgttttgtaagatccagagactcgtgt
gcacgctaggcttggcaaacacttgtataaggctggtgcttgcctaagcc
cgaaagagactgttcagttaagagctcactcaacccggatcagagaagag
acacaaactggtttcccagaatgatggttcctgcagacttcctccctgaa
ggagattttccatccctaaacctttcgaggaggaaggccaaccccccccc
ccccagagcaaaggtacccaattctaactaaatcagtagcatcccgagga
aagaaatttcttcaggaaacaaaaggttgagccccaggcgcagaggaagc
aggaggcagataggatcctcatgatgaggaaggaaaagttaagttgtcca
gagcccctatcctatccaggctcacttgctcctttattgaacatcaacaa
acagtgttagaggcagaaggatgcaggagagagtggacatactctgcagt
tttgcttccgggtcggactccccagtcccccaggccttgccagcagagac
cctgctctcatagtaattatggaggacaccattccaggggcatttccctc
cattcctggcacttacagtgtcagtctgtgcataaatacaattagatttg
agagttctatacaaaagccataagcggctcggtagagatctaatactact
tttcttagaaaaaaatattaaacgcatatccatcagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_38297590_38298962
seq2: B6Ng01-087G13.b_43_1213 (reverse)

seq1  AGGACACTGAAAGCCCTTTAGACCTTCTGACCCCACCCCCACCCCGGCTT  50
                                                        
seq2  --------------------------------------------------  0

seq1  CTTGCTGGGTCTGTGCCCTAGTGTTAGCTTCCCTCTTCTTCCTATAACTC  100
                                                        
seq2  --------------------------------------------------  0

seq1  TTGATCAGATGCATTCAGCCAACAAAGGGGGTGAAGTAGTAAAGATGGAT  150
                                                        
seq2  --------------------------------------------------  0

seq1  GGGGTACTAGCTACTCCAAGCTATGGGCCACCTTGGATGGAGTAGCTGGC  200
                               || |||    ||  ||| |||||||
seq2  ------------------------AGGACAC---TGAAAGAG-AGCTGGC  22

seq1  CTGTCCAGGAGCACTACAGTGAACAGCAGAGGAATGTCTGGAACTTTTCA  250
         |||| ||||| || |||| |||||||||  | |||  ||||  ||||
seq2  --TTCCA-GAGCA-TA-AGTG-ACAGCAGAG--AAGTC-CGAAC--TTCA  61

seq1  GACTGACCTGTGAATCTTAGAGTGAGATTTAAAGCATAGCAGACAACGCT  300
        |||| ||||| ||| ||||||||||||  |||||||||||||||||||
seq2  AGCTGA-CTGTG-ATC-TAGAGTGAGATT--AAGCATAGCAGACAACGCT  106

seq1  GGTAAAACCAACTTTACCTTCCTTCCTAGTGTTTGTGTACAAGTCCCTGA  350
       |||||    ||||||     ||  |||  | |||||||||||| |||||
seq2  TGTAAA---CACTTTA-----CTCTCTA-AGGTTGTGTACAAGT-CCTGA  146

seq1  GCCTCGAATGCTTCTGAACTGGGTCCCTTTCTGGGAAATTGTTTGTTTTG  400
      ||||||||||| |||| ||||| | |||||||||||||||||||||||||
seq2  GCCTCGAATGC-TCTG-ACTGGAT-CCTTTCTGGGAAATTGTTTGTTTTG  193

seq1  CTACACAAAGCTTACTTTGTGGCTCAGGTTGACCTTGAACTCATGATCCT  450
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTACACAAAGCTTACTTTGTGGCTCAGGTTGACCTTGAACTCATGATCTT  243

seq1  TCTGCCTTAGCCCAGGGGCTGGGATTGAATGCTTGGCCCAGTATGCTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTTAGCCCAGGGGCTGGGATTGAATGCTTGGCCCAGTATGCTTGG  293

seq1  CTCTCTCTGTGTGGTTTGACTTTATTGACACTGCATCCCCATGGAGTAG-  549
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTCTCTCTGTGTGGTTTGACTTTATTGACACTGCATCCCCATGGAGTAGA  343

seq1  AAAGTACTACTATCCCATTGCATAGATGAAGAAACTGAGCCGTGCAGAGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTACTACTATCCCATTGCATAGATGAAGAAACTGAGCCGTGCAGAGG  393

seq1  CTGAACAGCAAGTTTAGGCGAGGATGGAGCAAACAGAAGTGAAGGTCTTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACAGCAAGTTTAGGCGAGGATGGAGCAAACAGAAGTGAAGGTCTTC  443

seq1  AGACGCCAGACTCTAAAGCTGAGGTCAACAGCGTTAGAGGACTCTGACCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGCCAGACTCTAAAGCTGAGGTCAACAGCGTTAGAGGACTCTGACCC  493

seq1  TATGATCAACAGTGTTAGAGGACTCTGAACCTATGATCACAAGGTAGAGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATCAACAGTGTTAGAGGACTCTGAACCTATGATCACAAGGTAGAGA  543

seq1  AGAAGGGTCAAGAGCAGGTCCTGTATGTGAGGGCTGGGATGGGAGCTTTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGGTCAAGAGCAGGTCCTGTATGTGAGGGCTGGGATGGGAGCTTTG  593

seq1  GGATACAGCATGGAAGCCATGTTTGGAGGGGTAGGCTGGGTAGAGTCAGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACAGCATGGAAGCCATGTTTGGAGGGGTAGGCTGGGTAGAGTCAGG  643

seq1  CTTGGGGCTGTCTGGAATTCAGTCTTGGTGCAGGAGAAAGACTATGTCTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGGCTGTCTGGAATTCAGTCTTGGTGCAGGAGAAAGACTATGTCTC  693

seq1  CACAGAAGGATGCTGCCCCTGTAAGAATAAGAGACAAGGACAATGTCCCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAGGATGCTGCCCCTGTAAGAATAAGAGACAAGGACAATGTCCCT  743

seq1  CTGCAGATGGGAGCCCGGAGTCTCTGGGTACACTGGCCACTCTTCTCTTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGATGGGAGCCCGGAGTCTCTGGGTACACTGGCCACTCTTCTCTTT  793

seq1  TTGTCACTTATCTTGGCTTCTACACAGTCATACCATTTCTCACCCAACTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCACTTATCTTGGCTTCTACACAGTCATACCATTTCTCACCCAACTG  843

seq1  TGACCTTTCATTACCAGGAAGCAAATCAGAGGGGAGGGGGGCAAGCTCAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTTTCATTACCAGGAAGCAAATCAGAGGGGAGGGGGGCAAGCTCAG  893

seq1  CATGACACTCTGGTCACATCTATAGATTAAGGGAAGGTTGAGGGTAAAAA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACACTCTGGTCACATCTATAGATTAAGGGAAGGTTGAGGGTAAAAA  943

seq1  ----CTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTAACT  1195
          ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTAACT  993

seq1  ATCTTTAAATACAAGAAATAAATTGGATCACCTCTCTCCAATCAGCCACT  1245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTAAATACAAGAAATAAATTGGATCACCTCTCTCCAATCAGCCACT  1043

seq1  CTCGGGATGACAAACTCAGAGGCTAGTAGAAGGGGTGTGTCTGCAGCCTG  1295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGGATGACAAACTCAGAGGCTAGTAGAAGGGGTGTGTCTGCAGCCTG  1093

seq1  GCACTTCTCCTTGGGAATTGCTTGGAAAACGAGTGCCATTCGGTGCAATC  1345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTCTCCTTGGGAATTGCTTGGAAAACGAGTGCCATTCGGTGCAATC  1143

seq1  TGCTCAGCCTCAAAGGCGAAGGGAATTC  1373
      ||||||||||||||||||||||||||||
seq2  TGCTCAGCCTCAAAGGCGAAGGGAATTC  1171

seq1: chr7_38155747_38156855
seq2: B6Ng01-087G13.g_68_1155

seq1  GAATTCTTTCCTCTGTCCAGGGCATTCCATGTTTTCTTTTTTTTTTCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCTCTGTCCAGGGCATTCCATGTTTTCTTTTTTTTTTCTCC  50

seq1  CAGAAGACACAGAAACCTGGATATATAAGTTAAAGAACACAACACTTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGACACAGAAACCTGGATATATAAGTTAAAGAACACAACACTTCAG  100

seq1  GCTGTTTGCAACTAATTGAAAACAAAAGTGTAAATATGGCATGGGCCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTGCAACTAATTGAAAACAAAAGTGTAAATATGGCATGGGCCAAA  150

seq1  GGAAACACATCTGTGTGCCGAAGGCAGCCAGCAGGCCACCGGTGGGCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACACATCTGTGTGCCGAAGGCAGCCAGCAGGCCACCGGTGGGCTCC  200

seq1  TGGTGTCCTCTTGGAGCCTTGGAGGGGCTTCGCTCAGCTTTTCCCACCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTCCTCTTGGAGCCTTGGAGGGGCTTCGCTCAGCTTTTCCCACCTC  250

seq1  ATACGGAGGAGCAGCAAGGAGAAGCTGTAGCTAAGGTTTATGGACAGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACGGAGGAGCAGCAAGGAGAAGCTGTAGCTAAGGTTTATGGACAGCAA  300

seq1  ACCTGGGCAGGACTCGGAAGGCAACGTGAACCAAGGAAGCTTGGGCTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGGCAGGACTCGGAAGGCAACGTGAACCAAGGAAGCTTGGGCTCTT  350

seq1  CCCAGCCCTACCGAGGGCGCCTGTGTTTTGTAAGATCCAGAGACTCGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCCCTACCGAGGGCGCCTGTGTTTTGTAAGATCCAGAGACTCGTGT  400

seq1  GCACGCTAGGCTTGGCAAACACTTGTATAAGGCTGGTGCTTGCCTAAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGCTAGGCTTGGCAAACACTTGTATAAGGCTGGTGCTTGCCTAAGCC  450

seq1  CGAAAGAGACTGTTCAGTTAAGAGCTCACTCAACCCGGATCAGAGAAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAAGAGACTGTTCAGTTAAGAGCTCACTCAACCCGGATCAGAGAAGAG  500

seq1  ACACAAACTGGTTTCCCAGAATGATGGTTCCTGCAGACTTCCTCCCTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAACTGGTTTCCCAGAATGATGGTTCCTGCAGACTTCCTCCCTGAA  550

seq1  GGAGATTTTCCATCCCTAAACCTTTCGAGGAGGAAGGCCAACCCCCCCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATTTTCCATCCCTAAACCTTTCGAGGAGGAAGGCCAACCCCCCCCC  600

seq1  CCCCAGAGCAAAGGTACCCAATTCTAACTAAATCAGTAGCATCCCGAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGAGCAAAGGTACCCAATTCTAACTAAATCAGTAGCATCCCGAGGA  650

seq1  AAGAAATTTCTTCAGGAAACAAAAGGTTGAGCCCCAGGCGCAGAGGAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATTTCTTCAGGAAACAAAAGGTTGAGCCCCAGGCGCAGAGGAAGC  700

seq1  AGGAGGCAGATAGGATCCTCATGATGAGGAAGGAAAAGTTAAGTTGTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGCAGATAGGATCCTCATGATGAGGAAGGAAAAGTTAAGTTGTCCA  750

seq1  GAGCCCCTATCCTATCCAGGCTCACTTGCTCCTTTATTGAACATCAACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCCTATCCTATCCAGGCTCACTTGCTCCTTTATTGAACATCAACAA  800

seq1  ACAGTGTTAGAGGCAGAAGGATGCAGGAGAGAGTGGACATACTCTGCAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGTTAGAGGCAGAAGGATGCAGGAGAGAGTGGACATACTCTGCAGT  850

seq1  TTTGCTTCCGGGTCGGACTCCCCAGTCCCCCAGGCCTTGCCAGCAGAGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTCCGGGTCGGACTCCCCAGTCCCCCAGGCCTTGCCAGCAGAGAC  900

seq1  CCTGCTCTCCATAGTAATTATGGAGGACACCATTCCAGGGGGCATTTCCC  950
      |||||||| |||||||||||||||||||||||||||| ||||||||||||
seq2  CCTGCTCT-CATAGTAATTATGGAGGACACCATTCCA-GGGGCATTTCCC  948

seq1  TCCATTCCTGGCACTTACCAGTGTCAGTCTGTGCATAAATACAATTAGAT  1000
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TCCATTCCTGGCACTTA-CAGTGTCAGTCTGTGCATAAATACAATTAGAT  997

seq1  TTGAGAGTTCTATTACAAAAGCCAATAAAGCGGGCCTCGGTAGAGATTCT  1050
      |||||||||||| |||||||||||   ||||||  ||||||||||| |||
seq2  TTGAGAGTTCTA-TACAAAAGCCA--TAAGCGG--CTCGGTAGAGA-TCT  1041

seq1  AAAATTACTTAACTTTTCTTTAGAAAAAAAAATATTAAAACAGCATTATC  1100
      ||   ||||  |||||||||   | ||||||||||||||   ||| ||||
seq2  AA---TACT--ACTTTTCTT---AGAAAAAAATATTAAA--CGCA-TATC  1080

seq1  ACATCAGTG  1109
       ||||||||
seq2  -CATCAGTG  1088