BAC Information

Click to search

BAC

Clone NameB6Ng01-088N18
Chromosome7 (Build37)
Map Location 9,034,396 - 9,229,998
singlet/doubletdoublet
Overlap geneEG434109, LOC434110, EG628145, EG545909, LOC100042039
Upstream geneLOC100041942, LOC100042673, LOC100041949, LOC100042681, LOC100042688, LOC100042695, LOC100041956, LOC100041961, LOC100042703, LOC100041967, LOC100042724, LOC100041977, LOC100041983, LOC100041989, LOC100041998, LOC100042009, LOC100042754, V2r14, EG628128
Downstream geneLOC100042781, LOC665539, LOC100042795, LOC100042060, EG665552, LOC100042790, LOC100042803, LOC665598, LOC100042810, LOC665593, EG665582, EG434113, EG665577, LOC665571, LOC100042083, Gm1961, V2r4, LOC100042848, LOC100042096, LOC100042870, LOC100042105, LOC100042859, LOC100042113, LOC100042120, LOC100042126
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088N18.bB6Ng01-088N18.g
ACCDH901600DH901601
length722969
definitionDH901600|Mus musculus domesticus DNA, BAC clone: B6Ng01-088N18, 5' end.DH901601|Mus musculus domesticus DNA, BAC clone: B6Ng01-088N18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,229,277 - 9,229,998)(9,034,396 - 9,035,303)
sequence
gaattccaagatgatcctgttattcttactcctgatgattgagacattaa
attacgattttggaattaattagcctttacacaacatttgcaaggcagaa
gcaagccgacttttgtgcatctcaggccaacatgatgtacataggccagc
tagagtcatggggagtgtcaatggggagagggaggatagctaatactcaa
atactaaatgcaatcacacaattataaaatctttcagtgatacttaaaaa
ttagtaatattattaattataattactaatataatttagtaatatcattt
aaaaaataaaatttatttttaatttaattgttcttcacagctatgcttag
caaagcagcatgtcctgatggctgagtttttaaaattcattggaaatgta
agagaggttggctccaattagggcactttcaccaccatgaaccagtgttc
agttggcagcccttatccaaaggagaccctaacccacaagaaggaaaatc
tctgtgaatttgaggctagtgtgatgtaaacactcagtttgagccaagat
taaaaataaataaataaagtaaaattataacaaagggtgctttttcttgt
caattgtgagttagagatagaaggatctctttgagtttgaagatagtgtg
aagatagagagagacagggcagccatgactacatagagatacacagtctg
aggtagagggaggtggaggggg
gaattcactctggaaagaagcatttcaggtgaagtgagtgttgcaaaacc
ttcaaggacaactgcttccttgttgcttatcagcgagttcacacagaaga
gacactgttacatggactaaacgtggcaagtcatacattaacagatccag
tatttcaactgcacatatatatgaatactaagtgcataactagtgcctat
gagagaccccctcccccaaatgcattggattcctggaacaggagatacat
atgggtatgaagcagtctgtttcctggaaatggaaccctggtcctctacc
atagcagaatatggacttacacgctgaaccctctctaaaatccatgtttt
acacttttaagaagttactagattttgttctaaaaggctgtgtgtttcag
ttttcctcctgttgcacaccagataccagtttgtcacatcctgacatttt
ccaagtcgtgaggtattcactttaacaattttagtaactatggtggctca
ggcatgatggtgcaggctttaatcccagcactcaggaggcagaggcagct
gtagtcagtgagttcaaggtcgtcatggtctaggagtcccagatccttgt
atacctttaagtgaatgctgggaattgaaccaaagttatctgcaataaga
gtaagtactgttatccagtgaaccattttcctgaccctgtatctatgttt
ccttttttgtttatatacagtcttaccatgttggtttggctagcttgttt
ctctctgtatcacaagttgtcctagaactcatagacctaccatattctgg
gttctgagtgctggtattaaagacacacccctctgggagatcaaaataaa
ctggtgctttcctgtcttagacattgccctgagtagatttcgggtgctag
gtctgcacccaaccacacaacacccagaggatgctggactcccaggtgtt
ctatacacccatgatcata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_9229277_9229998
seq2: B6Ng01-088N18.b_49_770 (reverse)

seq1  CCCCCTCCACCTCCCTCTACCTCAGACTGTGTATCTCTATGTAGTCATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTCCACCTCCCTCTACCTCAGACTGTGTATCTCTATGTAGTCATGG  50

seq1  CTGCCCTGTCTCTCTCTATCTTCACACTATCTTCAAACTCAAAGAGATCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTGTCTCTCTCTATCTTCACACTATCTTCAAACTCAAAGAGATCC  100

seq1  TTCTATCTCTAACTCACAATTGACAAGAAAAAGCACCCTTTGTTATAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATCTCTAACTCACAATTGACAAGAAAAAGCACCCTTTGTTATAATT  150

seq1  TTACTTTATTTATTTATTTTTAATCTTGGCTCAAACTGAGTGTTTACATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTATTTATTTATTTTTAATCTTGGCTCAAACTGAGTGTTTACATC  200

seq1  ACACTAGCCTCAAATTCACAGAGATTTTCCTTCTTGTGGGTTAGGGTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAGCCTCAAATTCACAGAGATTTTCCTTCTTGTGGGTTAGGGTCTC  250

seq1  CTTTGGATAAGGGCTGCCAACTGAACACTGGTTCATGGTGGTGAAAGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGATAAGGGCTGCCAACTGAACACTGGTTCATGGTGGTGAAAGTGC  300

seq1  CCTAATTGGAGCCAACCTCTCTTACATTTCCAATGAATTTTAAAAACTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATTGGAGCCAACCTCTCTTACATTTCCAATGAATTTTAAAAACTCA  350

seq1  GCCATCAGGACATGCTGCTGTGCTAAGCATAGCTGTGAAGAACAATTAAA  400
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GCCATCAGGACATGCTGCTTTGCTAAGCATAGCTGTGAAGAACAATTAAA  400

seq1  TTAAAAATAAATTTTATTTTTTAAATGATATTACTAAATTATATTAGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATAAATTTTATTTTTTAAATGATATTACTAAATTATATTAGTAA  450

seq1  TTATAATTAATAATATTACTAATTTTTAAGTATCACTGAAAGATTTTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATTAATAATATTACTAATTTTTAAGTATCACTGAAAGATTTTATA  500

seq1  ATTGTGTGATTGCATTTAGTATTTGAGTATTAGCTATCCTCCCTCTCCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGTGATTGCATTTAGTATTTGAGTATTAGCTATCCTCCCTCTCCCC  550

seq1  ATTGACACTCCCCATGACTCTAGCTGGCCTATGTACATCATGTTGGCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACACTCCCCATGACTCTAGCTGGCCTATGTACATCATGTTGGCCTG  600

seq1  AGATGCACAAAAGTCGGCTTGCTTCTGCCTTGCAAATGTTGTGTAAAGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCACAAAAGTCGGCTTGCTTCTGCCTTGCAAATGTTGTGTAAAGGC  650

seq1  TAATTAATTCCAAAATCGTAATTTAATGTCTCAATCATCAGGAGTAAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAATTCCAAAATCGTAATTTAATGTCTCAATCATCAGGAGTAAGAA  700

seq1  TAACAGGATCATCTTGGAATTC  722
      ||||||||||||||||||||||
seq2  TAACAGGATCATCTTGGAATTC  722

seq1: chr7_9034396_9035303
seq2: B6Ng01-088N18.g_70_977

seq1  GAATTCACTCTGGAAAGAAGCATTTCAGGTGAAGTGAGTGTTGCAAAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGGAAAGAAGCATTTCAGGTGAAGTGAGTGTTGCAAAACC  50

seq1  TTCAAGGACAACTGCTTCCTTGTTGCTTATCAGCGAGTTCACACAGAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGGACAACTGCTTCCTTGTTGCTTATCAGCGAGTTCACACAGAAGA  100

seq1  GACACTGTTACATGGACTAAACGTGGCAAGTCATACATTAACAGATCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTGTTACATGGACTAAACGTGGCAAGTCATACATTAACAGATCCAG  150

seq1  TATTTCAACTGCACATATATATGAATACTAAGTGCATAACTAGTGCCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCAACTGCACATATATATGAATACTAAGTGCATAACTAGTGCCTAT  200

seq1  GAGAGACCCCCTCCCCCAAATGCATTGGATTCCTGGAACAGGAGATACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGACCCCCTCCCCCAAATGCATTGGATTCCTGGAACAGGAGATACAT  250

seq1  ATGGGTATGAAGCAGTCTGTTTCCTGGAAATGGAACCCTGGTCCTCTACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTATGAAGCAGTCTGTTTCCTGGAAATGGAACCCTGGTCCTCTACC  300

seq1  ATAGCAGAATATGGACTTACACGCTGAACCCTCTCTAAAATCCATGTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAGAATATGGACTTACACGCTGAACCCTCTCTAAAATCCATGTTTT  350

seq1  ACATTTTTAAGAAGTTACTAGATTTTGTTCTAAAAGGCTGTGTGTTTCAG  400
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTTTAAGAAGTTACTAGATTTTGTTCTAAAAGGCTGTGTGTTTCAG  400

seq1  TTTTCCTCCTGTTGCACACCAGATACCAGTTTGTCACATCCTGACATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTCCTGTTGCACACCAGATACCAGTTTGTCACATCCTGACATTTT  450

seq1  CCAAGTCGTGAGGTATTCACTTTAACAATTTTAGTAACTATGGTGGCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTCGTGAGGTATTCACTTTAACAATTTTAGTAACTATGGTGGCTCA  500

seq1  GGCATGATGGTGCAGGCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGATGGTGCAGGCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGCT  550

seq1  GTAGTCAGTGAGTTCAAGGTCGTCATAGTCTAGGAGTCCCAGATCCTTGT  600
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GTAGTCAGTGAGTTCAAGGTCGTCATGGTCTAGGAGTCCCAGATCCTTGT  600

seq1  ATACCTTTAAGTGAATGCTGGGAATTGAACCAAAGTTATCTGCAATAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTTTAAGTGAATGCTGGGAATTGAACCAAAGTTATCTGCAATAAGA  650

seq1  GTAAGTACTGTTATCCAGTGAACCATTTTCCTGACCCTGTATCTATGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTACTGTTATCCAGTGAACCATTTTCCTGACCCTGTATCTATGTTT  700

seq1  CCTTTTTTGTTTATATACAGTCTTACCATGTTGGTTTGGCTAGCTTTTTT  750
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CCTTTTTTGTTTATATACAGTCTTACCATGTTGGTTTGGCTAGCTTGTTT  750

seq1  CTCTCTGTATCACAAGTTGTCCTAGAACTCATAGACCTACCATATTCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGTATCACAAGTTGTCCTAGAACTCATAGACCTACCATATTCTGG  800

seq1  GTTCTGAGTGCTGGTATTAAAGACACACCCCTCTGGGAGATCAAAATAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGAGTGCTGGTATTAAAGACACACCCCTCTGGGAGATCAAAATAAA  850

seq1  CTGGTGCTTTCCTGTCTTAGACATTGCCCTGAGTAGATTTCGGGTGCTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGCTTTCCTGTCTTAGACATTGCCCTGAGTAGATTTCGGGTGCTAG  900

seq1  GTCTGCAC  908
      ||||||||
seq2  GTCTGCAC  908