BAC Information

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BAC

Clone NameB6Ng01-089A05
Chromosome7 (Build37)
Map Location 127,092,606 - 127,093,708
singlet/doubletsinglet
Overlap geneDnahc3
Upstream geneIqck, Gprc5b, Gpr139, LOC100042871, Gp2, Umod, 1700007B13Rik, C730027J19Rik, Acsm2, Acsm1, BC048390, Thumpd1, EG434233, Acsm3, Exod1, 2610020H08Rik, Dcun1d3, LOC100043399, LOC100043396, Lyrm1
Downstream geneTmem159, Zp2, Anks4b, Crym, Abca14, Abca15, Abca16, LOC668429, LOC546994, LOC100042914, E130201H02Rik, LOC637957, Uqcrc2, 4930408O21Rik, BC030336, E030013G06Rik, EG436008, LOC100043426, Eef2k, Polr3e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089A05.bB6Ng01-089A05.g
ACCDH901709DH901710
length1,1061,257
definitionDH901709|Mus musculus domesticus DNA, BAC clone: B6Ng01-089A05, 5' end.DH901710|Mus musculus domesticus DNA, BAC clone: B6Ng01-089A05, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagagatggaaaatttaaccatttaaaactgttgataactttttc
cttatagtacagtaagggtgggttgtggaaatagctgtgagtaaaacact
tgccacacacacatgaggaactgaacctcttataaagctggatggtatgc
tgtgtgtctgtaattcaaggctcctatggagagaaggaatcagagataag
aggatgcacagaggctggcctaacacccagactcgaataaacagtggtga
agaagagagcctgtctaaatgggaagtggtgacagctttagtccaggcac
tcgagagacagaggcaggcagatctctaggttcaaagccaacctgaactt
acagagtgagtaagtctacagagtgagctccagaacagccatggttacac
agagaacaccctgtcttaatcaaacaaaacaaaaagaccctgtctgaaac
aaggtggatgtccctctgacccctgaccccacccccttcatacacacaca
cacacacacacacacacacacacacacacacacacacatttctttttaat
atgataggagccaagcccaggatgacattagctctgagtttatcatcttc
ttcttgaaccattattttatctattacatgtcaaattttttctaatttaa
tctttttgcttatttcttacattccagattttatttccctcctggcccac
cctccaactgtttcacatacctcctccccaccccaccccacccccccccc
ccccgtctccactaaggatgttcctaccacccaccccacccagacttcta
aactccctggggccttcagtctccttgagacatctttctctgactgaacc
cagacctggcagtcctctgctgtattatgtgctgggggtctcatatcaac
ttgtgtatgctgcctgtttggtggcccaatgtttgaaagatctcaggggt
caggtaattgagactcctggtcctcttacaggtcaccctcctcctcagct
tctccagtttttccttaactgaaccttaggggctgtaccttctgtccttt
gtttgggtgagagtgccatcatccacctgggaagggagaaagaaagaaat
cacaag
gaattcaagtccaagtggatcaaagacctcaacgtaaaatcagatacact
gaacctgatagaagagaaagtggggaatagccttgaacacattagcatag
tagatgactttctgagcaaaaccccattaagcataagcataaagatcaaa
aatcaataaatggggccttatgaaacttgaaaagctaaagaactcaagaa
acaggatatcaaaaaccaaaataatcctacttaaaaaacaggttacaaaa
ttaaacagaattatccatagaggaatttcaaatggctgtgaaacaaagaa
atgttgaacattcttagccatcagggaaatgcaaactaaaacgactttga
gattccatcttacacctgtcagaatggctaagatcagtaacatacctcat
gctggtgggtacgtggaataaggggagcccattgctggtgggagtgtaaa
ctagtacagccactatggaaatcagatggaaatcagtatggtggttcctc
aagatctatctcaaaattctactatttccacttagacatatatatacaaa
gaatacactattcttaatggaactagaagaaattctgagggaggtaacat
agacccagacagagaaatatggtatatactcacttgtaagcagatactag
ctatatataaataatgatcaagctacagtttcatagacctagaaggttag
gttaagagaagggatctaggggctctccctgggagggagaaataaaatag
attttcacaggcaggtggagatgtagtgaagagaaagagtgcagggagag
actgttggatttgggatgcatttgggagatggtgtggaaacttagtgcag
tagaaacttcctggaatctatgagggcgatcctaatgattacacctaata
aaagaggatactgagtctcagatttccatctcttgaaaccaggcaaagtt
gccagtggcagcctaggtttaaattcagttgttttgttggcaagggcgtc
ctatggaagccccaaacaacctatgctatatgctaagacaaatgattaca
ctctgcagaatacagcagggctcattctgaagaagtcttcaagagaggag
ttaaactggcacggtgtggggccttaaccctatgtttcagtcgctttggg
acgagagttgcttccaggcgtgctaataaaatgtgcaaccaccagtcaaa
ctcttgcctcaactggcttgtcttcaaacacttgggccatgggtatacac
aaacaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_127092606_127093708
seq2: B6Ng01-089A05.b_45_1150 (reverse)

seq1  CTTGTGATTTCTTTC-TTCTCCCTCCCAAGTGGGATTGAGGCATCCTCA-  48
      ||||||||||||||| |||||||| || ||  ||||   ||||  |||| 
seq2  CTTGTGATTTCTTTCTTTCTCCCTTCCCAGGTGGATGATGGCACTCTCAC  50

seq1  CCAACCAATGGACAGAAGCTACTGACCCTATGGTTCAGTTAGGGAAAAGC  98
      |||| ||| ||||||||| ||| | ||||| |||||||||| |||||| |
seq2  CCAAACAAAGGACAGAAGGTACAGCCCCTAAGGTTCAGTTAAGGAAAAAC  100

seq1  TGGAAGAAGCTGAGGAGGAGGGTGACCCTGTAAGAGGACCAGGAGTCTCA  148
      ||| ||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TGG-AGAAGCTGAGGAGGAGGGTGA-CCTGTAAGAGGACCAGGAGTCTCA  148

seq1  ATTAACCTGGACCCCTGAGATCTCTCAAACATTGGACCACCAAACAGGCA  198
      ||| |||| |||||||||||||| ||||||||||| ||||||||||||||
seq2  ATT-ACCT-GACCCCTGAGATCTTTCAAACATTGGGCCACCAAACAGGCA  196

seq1  GCATACACCAGCTGATATGAGACCCCCAGCACAT-ATACAGCAGAGGACT  247
      |||||||| || |||||||||||||||||||||| |||||||||||||||
seq2  GCATACACAAGTTGATATGAGACCCCCAGCACATAATACAGCAGAGGACT  246

seq1  GCCAGGTCTGGGTTCAGTCAGAG-AAGATGTCTC-AGGAGACTGGAGGCC  295
      ||||||||||||||||||||||| |||||||||| ||||||||| |||||
seq2  GCCAGGTCTGGGTTCAGTCAGAGAAAGATGTCTCAAGGAGACTGAAGGCC  296

seq1  CCAGGGAGTTTAGAAGTCT-GGTGGGGTGGGTGGTAGGAACATCC-TAGT  343
      ||||||||||||||||||| ||||||||||||||||||||||||| ||||
seq2  CCAGGGAGTTTAGAAGTCTGGGTGGGGTGGGTGGTAGGAACATCCTTAGT  346

seq1  GGAGACGGGGGGGGGGGGGGGTGGGGTGGGGTGGGGAGGAGGTATGTGAA  393
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAC-GGGGGGGGGGGGGGTGGGGTGGGGTGGGGAGGAGGTATGTGAA  395

seq1  ACAGTTGGAGGGTGGGCCAGGAGGGAAATAAAATCTGGAATGTAAGAAAT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTGGAGGGTGGGCCAGGAGGGAAATAAAATCTGGAATGTAAGAAAT  445

seq1  AAGC-AAAAGATTAAATTAGAAAAAATTTGACATGTAATAGATAAAATAA  492
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAAAGATTAAATTAGAAAAAATTTGACATGTAATAGATAAAATAA  495

seq1  TGGTTCAAGAAGAAGATGATAAACTCAGAGCTAATGTCATCCTGGGCTTG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCAAGAAGAAGATGATAAACTCAGAGCTAATGTCATCCTGGGCTTG  545

seq1  GCTCCTATCATATTAAAAAGAAATGTGTGTGTGTGTGTGTGTGTGTGTGT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTATCATATTAAAAAGAAATGTGTGTGTGTGTGTGTGTGTGTGTGT  595

seq1  GTGTGTGTGTGTGTGTGTGTATGAAGGGGGTGGGGTCAGGGGTCAGAGGG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTATGAAGGGGGTGGGGTCAGGGGTCAGAGGG  645

seq1  ACATCCACCTTGTTTCAGACAGGGTCTTTTTGTTTTGTTTGATTAAGACA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCACCTTGTTTCAGACAGGGTCTTTTTGTTTTGTTTGATTAAGACA  695

seq1  GGGTGTTCTCTGTGTAACCATGGCTGTTCTGGAGCTCACTCTGTAGACTT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTTCTCTGTGTAACCATGGCTGTTCTGGAGCTCACTCTGTAGACTT  745

seq1  ACTCACTCTGTAAGTTCAGGTTGGCTTTGAACCTAGAGATCTGCCTGCCT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTCTGTAAGTTCAGGTTGGCTTTGAACCTAGAGATCTGCCTGCCT  795

seq1  CTGTCTCTCGAGTGCCTGGACTAAAGCTGTCACCACTTCCCATTTAGACA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCTCGAGTGCCTGGACTAAAGCTGTCACCACTTCCCATTTAGACA  845

seq1  GGCTCTCTTCTTCACCACTGTTTATTCGAGTCTGGGTGTTAGGCCAGCCT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTCTTCTTCACCACTGTTTATTCGAGTCTGGGTGTTAGGCCAGCCT  895

seq1  CTGTGCATCCTCTTATCTCTGATTCCTTCTCTCCATAGGAGCCTTGAATT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCATCCTCTTATCTCTGATTCCTTCTCTCCATAGGAGCCTTGAATT  945

seq1  ACAGACACACAGCATACCATCCAGCTTTATAAGAGGTTCAGTTCCTCATG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACACACAGCATACCATCCAGCTTTATAAGAGGTTCAGTTCCTCATG  995

seq1  TGTGTGTGGCAAGTGTTTTACTCACAGCTATTTCCACAACCCACCCTTAC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGGCAAGTGTTTTACTCACAGCTATTTCCACAACCCACCCTTAC  1045

seq1  TGTACTATAAGGAAAAAGTTATCAACAGTTTTAAATGGTTAAATTTTCCA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTATAAGGAAAAAGTTATCAACAGTTTTAAATGGTTAAATTTTCCA  1095

seq1  TCTCTGAATTC  1103
      |||||||||||
seq2  TCTCTGAATTC  1106