BAC Information

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BAC

Clone NameB6Ng01-089C13
Chromosome7 (Build37)4 (Build37)
Map Location 86,968,389 - 86,968,738100,988,200 - 100,989,339
singlet/doubletsingletsinglet
Overlap geneAnpep
Upstream geneDet1, Isg20l1, Isg20, Acan, Hapln3, Mfge8, Abhd2, Rlbp1, BC025462, Polg, AI854517, Rhcg, 5730590G19Rik, Plin, Pex11a, EG626359, EG665900, Mesp1, Mesp2
Downstream geneAp3s2, 2610034B18Rik, Zfp710, Idh2, Sema4b, Cib1, D330012F22Rik, LOC100042374, LOC100042379, Ttll13, Ngrn, Vps33b, Prc1, Rccd1, Unc45a, Hddc3, Man2a2, Fes, Furin, LOC384647, Blm, Crtc3, Iqgap1, LOC100042402
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089C13.bB6Ng01-089C13.g
ACCDH901808DH901809
length3881,121
definitionDH901808|Mus musculus domesticus DNA, BAC clone: B6Ng01-089C13, 5' end.DH901809|Mus musculus domesticus DNA, BAC clone: B6Ng01-089C13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(86,968,389 - 86,968,738)(100,988,200 - 100,989,339)
sequence
tattgggaaatgggctaaaagctgttcctgtttccaatgatagatagcaa
agaactttattacattttatccatgtcctgtgtcttaacaggaggctgag
tttaaaggtgatagacaaagtgatctgagcaaggaaatttcaaagcgatc
cagaatttagactgtggcgtggttaatgtcggcttcttctggccaagttt
acagtgagaacaggaagcaaaatgcaaagtaggaaagacttgagaaactc
tcagtttgattataaaagccagtgcaaatagagcaaagaaaggtatggtt
tctaaaggttttaggttcatttaaaagaagtcattagcatcagaaaaatg
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
gaattctcccctggtaaaagaaaataccaagaagatattgctggagctat
caatgagtcattcaggcagtggtttctgatatgacttatcagtctgtaat
tctttgttttagatctttccctctggttagatatcagagtgttcttttcc
tagtaaatgttctggaatacctaaggggtcactaacacatgtagtctcca
atattttcaaaaaataaaaaataaaatagaagacaagaggggaagtgaat
gatgatcccaaataaaaacagttccaggcaaggggcacagagacctgaaa
tttgtatcaaaatgaaagttctaggaatgtgtttttaatctctgaggccc
tctcttgatgttaatcttaaggcccgggacatcttttaggtaattatcag
tacttctttttttccagcaaagcagtgctttctgttggagatgtgagcac
tcttctctaagagcccagtcatgctgccagaggaggttgtttacgactga
gacatcccttgcaaaatggaacattttatgataccaattttgcaaatgga
aacaaaatgtatgcaaagaacaaagacagaaggaaacacaataaatggac
ttcaaataatttccaatggcctggccgcacttccctaatgtccatgttaa
ttttatgagcagtctgtgatgtagccctagttatgggtggtgcagggaga
agccagctggggtctgttctttcttcaggaagcacttataaattagaaac
ccgccatctttttaatgtctttattatcaatgttcgaaatctcatttcct
tctttatttctctgccttgctgtcttacggggtttacagaggccccaccg
ggttgctgtgaaaatataaaagtctaaaggatgggtcttagggacagata
ctgttaacccacggtatccttcttggaaacaaagtaagatggggtcagtt
tagcatactgaggagttagctctccgcctgataatgttgtgcagtaagaa
ctatgcagcgttgccctccttgcagcgtggaggatgttcccctctcagca
tcttgcctgcatgtgctgctctgagtcttatccagcatctgggtatgagg
ggcgtctcaagtcatttggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_86968389_86968738
seq2: B6Ng01-089C13.b_389_436 (reverse)

seq1  CACACACACACACACACACACACACACACACACACACAAATTGTCCTACA  50
      |||||||||||||||||||||||||||||||||||||| ||| | ||   
seq2  CACACACACACACACACACACACACACACACACACACACATTTTTCTG--  48

seq1  TGTACAAAAATATCAATAAAACTCTTTAAAACACACAGGTATAGGAGCTG  100
                                                        
seq2  --------------------------------------------------  48

seq1  GAGAGATGGCTCAGCAGTTAAGAGCAATGACTGCTCTTCTAGAGGTCCTG  150
                                                        
seq2  --------------------------------------------------  48

seq1  AGTTCAATTCCCAGCAATCACATGGTAGCTCACAACCATCTGTAATGGGA  200
                                                        
seq2  --------------------------------------------------  48

seq1  TCTGATGACTTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTCATAT  250
                                                        
seq2  --------------------------------------------------  48

seq1  ACATAAATTAAATAAATTTTTAAAAAACATTTAAAAAACCCACAGGTATA  300
                                                        
seq2  --------------------------------------------------  48

seq1  AAACTACATGATACCCAAGTGTAAGCAAGGGAAAATAACACATTTTTCTG  350
                                                        
seq2  --------------------------------------------------  48

seq1: chr4_100988200_100989339
seq2: B6Ng01-089C13.g_70_1190

seq1  GAATTCTCCCCTGGTAAAAGAAAATACCAAGAAGATATTGCTGGAGCTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCCTGGTAAAAGAAAATACCAAGAAGATATTGCTGGAGCTAT  50

seq1  CAATGAGTCATTCAGGCAGTGGTTTCTGATATGACTTATCAGTCTGTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAGTCATTCAGGCAGTGGTTTCTGATATGACTTATCAGTCTGTAAT  100

seq1  TCTTTGTTTTAGATCTTTCCCTCTGGTTAGATATCAGAGTGTTCTTTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTTTTAGATCTTTCCCTCTGGTTAGATATCAGAGTGTTCTTTTCC  150

seq1  TAGTAAATGTTCTGGAATACCTAAGGGGTCACTAACACATGTAGTCTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAATGTTCTGGAATACCTAAGGGGTCACTAACACATGTAGTCTCCA  200

seq1  ATATTTTCAAAAAATAAAAAATAAAATAGAAGACAAGAGGGGAAGTGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTCAAAAAATAAAAAATAAAATAGAAGACAAGAGGGGAAGTGAAT  250

seq1  GATGATCCCAAATAAAAACAGTTCCAGGCAAGGGGCACAGAGACCTGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATCCCAAATAAAAACAGTTCCAGGCAAGGGGCACAGAGACCTGAAA  300

seq1  TTTGTATCAAAATGAAAGTTCTAGGAATGTGTTTTTAATCTCTGAGGCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATCAAAATGAAAGTTCTAGGAATGTGTTTTTAATCTCTGAGGCCC  350

seq1  TCTCTTGATGTTAATCTTAAGGCCCGGGACATCTTTTAGGTAATTATCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTGATGTTAATCTTAAGGCCCGGGACATCTTTTAGGTAATTATCAG  400

seq1  TACTTCTTTTTTTCCAGCAAAGCAGTGCTTTCTGTTGGAGATGTGAGCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCTTTTTTTCCAGCAAAGCAGTGCTTTCTGTTGGAGATGTGAGCAC  450

seq1  TCTTCTCTAAGAGCCCAGTCATGCTGCCAGAGGAGGTTGTTTACGACTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCTAAGAGCCCAGTCATGCTGCCAGAGGAGGTTGTTTACGACTGA  500

seq1  GACATCCCTTGCAAAATGGAACATTTTATGATACCAATTTTGCAAATGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCCCTTGCAAAATGGAACATTTTATGATACCAATTTTGCAAATGGA  550

seq1  AACAAAATGTATGCAAAGAACAAAGACAGAAGGAAACACAATAAATGGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAATGTATGCAAAGAACAAAGACAGAAGGAAACACAATAAATGGAC  600

seq1  TTCAAATAATTTCCAATGGCCTGGCCGCACTTCCCTAATGTCCATGTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATAATTTCCAATGGCCTGGCCGCACTTCCCTAATGTCCATGTTAA  650

seq1  TTTTATGAGCAGTCTGTGATGTAGCCCTAGTTATGGGTGGTGCAGGGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGAGCAGTCTGTGATGTAGCCCTAGTTATGGGTGGTGCAGGGAGA  700

seq1  AGCCAGCTGGGGTCTGTTC-TTCTTCAGGAAAGCACTTATAAATTAGAAA  749
      ||||||||||||||||||| ||||||||| ||||||||||||||||||||
seq2  AGCCAGCTGGGGTCTGTTCTTTCTTCAGG-AAGCACTTATAAATTAGAAA  749

seq1  -CCGCCATCTTTTTAATGTCTTTATTATCAATGTTCGAAATCTCATTTCC  798
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCCATCTTTTTAATGTCTTTATTATCAATGTTCGAAATCTCATTTCC  799

seq1  TTCTTTATTTCTCTGCCTTGCTGTC-TACGGGGTTTACAGAGGCCCCACC  847
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTCTTTATTTCTCTGCCTTGCTGTCTTACGGGGTTTACAGAGGCCCCACC  849

seq1  GGG-TGCTGTGAAAAATATAAAAGTCT-AAGGATGGGTCTCAGGGACAGA  895
      ||| ||||||| ||||||||||||||| |||||||||||| |||||||||
seq2  GGGTTGCTGTG-AAAATATAAAAGTCTAAAGGATGGGTCTTAGGGACAGA  898

seq1  TACCGTTAACCCACGGTTATCCTTCTTGGAAACAAAGTAAGATTGGGGTC  945
      ||| |||||||||||| ||||||||||||||||||||||||| |||||||
seq2  TACTGTTAACCCACGG-TATCCTTCTTGGAAACAAAGTAAGA-TGGGGTC  946

seq1  AG-TTAGCATACTGAGGAGTAAGCTCT-CGCCTGATAAGTGTGGTGGCCA  993
      || ||||||||||||||||| |||||| |||||||||| ||| |||  ||
seq2  AGTTTAGCATACTGAGGAGTTAGCTCTCCGCCTGATAA-TGTTGTG--CA  993

seq1  GTAAGAACTATGCAGGCGTTTGCACTCCCTGCAGCCGTGGAGGAGTGTTC  1043
      |||||||||||||| ||| |||| |||| ||||| ||||||||| |||||
seq2  GTAAGAACTATGCA-GCG-TTGCCCTCCTTGCAG-CGTGGAGGA-TGTTC  1039

seq1  CCCTTCCTCAGCATCCTTGCCTGCATGTGCTGCTCCTTGAGTTCTTTATC  1093
      ||||  |||||||| ||||||||||||||||||||  |||||   |||||
seq2  CCCT--CTCAGCAT-CTTGCCTGCATGTGCTGCTC--TGAGT--CTTATC  1082

seq1  CTAGCCATTCTGGTGATGGAAGGTGGCGTCTCAGAGTCATTTTGGTT  1140
      | |||   |||||  |||  ||| ||||||||| ||||| |||||||
seq2  C-AGC--ATCTGGGTATG--AGG-GGCGTCTCA-AGTCA-TTTGGTT  1121