BAC Information

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BAC

Clone NameB6Ng01-089O07
Chromosome7 (Build37)4 (Build37)
Map Location 107,488,199 - 107,488,833120,826,169 - 120,826,231
singlet/doubletsingletsinglet
Overlap genePpme1
Upstream geneSerpinh1, Gdpd5, 2810406K13Rik, Rps3, Rnu15-b, EG449630, Arrb1, EG245190, Slco2b1, Olfr520, Olfr521, Neu3, Spcs2, Xrra1, EG330602, Chrdl2, Pold3, 2610209A20Rik, Kcne3, LOC631577, Pgm2l1, Gpx2-ps1, P4ha3
Downstream geneAU020772, Ucp3, Ucp2, Dnajb13, LOC667112, Chchd8, Mrpl48, LOC100041155, Rab6, LOC100041167, Plekhb1, B930006L02Rik, LOC100041204, Tnfrsf19l, Arhgef17, P2ry6, P2ry2, LOC100049539, EG435996, Fchsd2, EG622673, Atg16l2, Stard10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089O07.bB6Ng01-089O07.g
ACCDH902347DH902348
length634968
definitionDH902347|Mus musculus domesticus DNA, BAC clone: B6Ng01-089O07, 5' end.DH902348|Mus musculus domesticus DNA, BAC clone: B6Ng01-089O07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(107,488,199 - 107,488,833)(120,826,169 - 120,826,231)
sequence
gaattccttatgctctggaagaaaagataacataagaataatgacattat
catacctaaaatccaggatcttaatagcattaattaactaagtagtaata
ttgctgattgtctcaagttttggtaagtttttgatttacagataatagtt
gtgtgcattttgattttcacttttaacttaggaactaaataacaaggcaa
ctaaagttaacaataatgtagaacgtatttcaaaaaggccagaaaagaag
attttttgagtgattttaccatgaaaaaagcattaaggtgatagctatgc
taattatcctgaactaattatgataaagtatacatgatattgaaatattt
tttgagttacaatttattgatggaagctggcaattactgtgacaatggcc
agcaggaacctgcaggtttgaacatccaatccaaaaaattaccattttct
tcttcttagaaatggtgccccctttatacaaacacaggatgacagaagaa
gggagacacactggcaagaagggtttcagcaggagaggatgagagagggg
acagggtgtgagtgactacagttttctgtatgtgttataactgtcaaacc
taaacgtgttatctgtcaaacaacagtaccgcgt
gaattctgtgctaaaaccatctaaccctgggcttttgatgttgttattgt
gagacttttaatgactatttctatttcattaggagttataggtctgttta
agtttcttatctgatcttgatttaactttgataagggatgtatattgaga
aaattatccatttcttttaaattctcaatttgcttgaatacagatttttt
tttttaaccaaagacctcaagattctctggatttcttcagtgtctgttac
tatgtccctttttcatctctgattatgttaatttgtacagtctctctctg
ccttttagttaattcgagtaagggcttgataatcttattggttttctcaa
agaaccaactctgttttgattccttgtatttgtttgtctctgttttatta
atttcagccctaagtttgattatttcttgttgcctattccttttgggtgt
gacttcttcttgttcaagagcttttggtgtgctgttatattactaatatg
agaactctacaacctttttatgtaggtgcttagtgctatgaatttgcctc
cttgaactgccttcattgtgtcctataagttgtgtattcattttcattca
gttctagcaagtcttttatttttctttatttctgcctttgacctattttt
cagtaagtagtcagtagttcagtttctgtgagttttgtaaactttctgtt
gttgttaaagtttctgttgcaactttactctttggtggtcagatagaatg
caagatgttattttaattttcttgtatctgtgagacttgctttatgtctg
agtatgtgatcagtttggggaaagttctgggagttgctgagaaggatact
catttgtgtttggggaattgtcctgtaaatatctgttgggacatttgctt
aaagcgcaattatctccagcattctctgtttgtttttgttgtttgttgtt
tgtttgttggtggtggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_107488199_107488833
seq2: B6Ng01-089O07.b_45_678 (reverse)

seq1  ACGCGGTACTGTTGTTTGCCCGCTTACACGTTTAGGTTTGACAGTTTTAT  50
      |||||||||||||||||| | | | ||||||||||||||||||||| || 
seq2  ACGCGGTACTGTTGTTTGACAGATAACACGTTTAGGTTTGACAGTTATA-  49

seq1  ACACATACAGAAAAACTGTAGTCACTCACACCCTGTCCCCTCTCTCATCC  100
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ACACATACAG-AAAACTGTAGTCACTCACACCCTGTCCCCTCTCTCATCC  98

seq1  TCTCCTGCTGAAACCCTTCTTGCCAGTGTGTCTCCCTTCTTCTGTCATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGCTGAAACCCTTCTTGCCAGTGTGTCTCCCTTCTTCTGTCATCC  148

seq1  TGTGTTTGTAT-AAGGGGGCACCATTTCTAAGAAGAAGAAAATGGTAATT  199
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTGTATAAAGGGGGCACCATTTCTAAGAAGAAGAAAATGGTAATT  198

seq1  TTTTGGATTGGATGTTCAAACCTGCAGGTTCCTGCTGGCCATTGTCACAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGATTGGATGTTCAAACCTGCAGGTTCCTGCTGGCCATTGTCACAG  248

seq1  TAATTGCCAGCTTCCATCAATAAATTGTAACTCAAAAAATATTTCAATAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGCCAGCTTCCATCAATAAATTGTAACTCAAAAAATATTTCAATAT  298

seq1  CATGTATACTTTATCATAATTAGTTCAGGATAATTAGCATAGCTATCACC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTATACTTTATCATAATTAGTTCAGGATAATTAGCATAGCTATCACC  348

seq1  TTAATGCTTTTTTCATGGTAAAATCACTCAAAAAATCTTCTTTTCTGGCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGCTTTTTTCATGGTAAAATCACTCAAAAAATCTTCTTTTCTGGCC  398

seq1  TTTTTGAAATACGTTCTACATTATTGTTAACTTTAGTTGCCTTGTTATTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGAAATACGTTCTACATTATTGTTAACTTTAGTTGCCTTGTTATTT  448

seq1  AGTTCCTAAGTTAAAAGTGAAAATCAAAATGCACACAACTATTATCTGTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCTAAGTTAAAAGTGAAAATCAAAATGCACACAACTATTATCTGTA  498

seq1  AATCAAAAACTTACCAAAACTTGAGACAATCAGCAATATTACTACTTAGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAAAACTTACCAAAACTTGAGACAATCAGCAATATTACTACTTAGT  548

seq1  TAATTAATGCTATTAAGATCCTGGATTTTAGGTATGATAATGTCATTATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAATGCTATTAAGATCCTGGATTTTAGGTATGATAATGTCATTATT  598

seq1  CTTATGTTATCTTTTCTTCCAGAGCATAAGGAATTC  635
      ||||||||||||||||||||||||||||||||||||
seq2  CTTATGTTATCTTTTCTTCCAGAGCATAAGGAATTC  634

seq1: chr4_120826169_120826231
seq2: B6Ng01-089O07.g_1002_1038 (reverse)

seq1  AACCAACAACTCCAACTCCTACCCAAAAGCCACCAACAAACAAACAACAA  50
                          | |||    |||||||||||||||||||| 
seq2  --------------------AACCA----CCACCAACAAACAAACAACA-  25

seq1  CAACAACAAAAAC  63
       ||||||||||||
seq2  -AACAACAAAAAC  37