BAC Information

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BAC

Clone NameB6Ng01-090A06
Chromosome7 (Build37)
Map Location 73,910,594 - 74,013,212
singlet/doubletdoublet
Overlap geneLass3, Adamts17
Upstream geneLOC665241, Pcsk6, Snrpa1, H47, Chsy1, Lrrk1, Aldh1a3, Asb7, Lins2
Downstream geneLysmd4, Mef2a, EG665304, Lrrc28, Ttc23, Dmn, LOC665319
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090A06.bB6Ng01-090A06.g
ACCDH902432DH902433
length1,0081,236
definitionDH902432|Mus musculus domesticus DNA, BAC clone: B6Ng01-090A06, 5' end.DH902433|Mus musculus domesticus DNA, BAC clone: B6Ng01-090A06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,910,594 - 73,911,609)(74,011,941 - 74,013,212)
sequence
gaattcagattctatggcagagccacagtacccttaaccatggagtatct
ctctagctcctgcccttcccgtttaacagtaaacagtgggcaactgttgc
ttccagtatctgctcagccagtgaggcagggcatcctttaggttgccaga
gcaccacataccaagtctctatgtctatgtctcgcctggctaacaacagt
gtggacaaatgccttctttaattcttagggccgcccttgctttctcaagg
gattacatgtagtcattattttctaactccttatcaagttaattctcaac
aatgcagcctgagttctttctattctctcttttatttatttttatgtgta
tgggagttttgcctacaggtatatctgtgtgtcacatgtgtgcagtgcct
gaaaaagtcagaagtcggtgtttgatcccctggtaatgaggttgcagatg
gttgagggtcaccatgtaggtgctggacttgaacataggtcttctgtaag
agcagtcagtgctcttacccattgagcgtctctccagctcagctctttca
agtctgcgatgctacagaaacatatttctttcagtcagataggaaaaatg
gcagagatcatacttcataaattaagataaagtttacattatttgttata
aattaaaccatttttaccctaaataacatattttctatttcttacaaaag
tgtttgtaagtacagatttgatggtacaaaaaccatgagtactctgcagg
tgggaaagcagaggttaatcctcagtgctcagtggtactcaaacacacgt
gccatgacatcaggctcagcactgttgacttgagtgaggggctgtttgtt
tgtttgtttgtttctgggtatacggacatttttaaaaatctcacagtaca
atgcttctgatagtggaagagagtaagcaaatatctcctggggatcaaga
agagcttagaagtttctgtatggaggaggagcatcagagactgcccaacc
ggggatgc
gaattccctgtctggttgtgcacaagaaattgcccgttgcttaggaagaa
ggctgtgcaaaatgagcccacttcatctgcggctggaaatcgcccaacaa
aactgggcagcagctgtcccgatgagacttttttttttttttctgggatt
ttccatgagaaattagtgtactgaaaaagctagacttctttgcagaaggg
ggagggatatgcaacctaaagccacttttttttaagtccattactcttgc
ccctgcctcgggtggactttctggcttgaggcctcctgctgggagggaag
ccctgctacactcctttgcttggtcacacattctctcttctgctcttgtc
tgttctctccctcggagggaacatgaatgctgctgattcaaaaatcagac
acttcaaggagagctggtaggaactttgcccaccccccactgctgtctgg
aacaccaaacgagtacgtaggccatacatgtaccagcctcctggaccagg
cattctgaggggccacaaccctcctccagtctcacagaggaccagctgcc
agaagtgtctgagccacctggacagctccggccagtgctcactttaaata
ataaaccatgcatttttttgatccgtctgcagcgccaggcagattttcct
atttaagctggaggccttctctgctttgagttactaaagtgggatgggtg
tgagttgcataagagcccagaggagaaccggggagagatggcatagctgc
ttgcccagctcctctgtttggcagaatggtgtgtgggaaaaaagggttca
ggggcagctataaaaaatggcatggtgcttctgtctcattgtctccgtgt
tgatatttcagcctcttctctcagacagagttattagcattgtccgagac
ggaagcattatgcttgtcccctggtggtatcgtcgtgttctgggcggaaa
cacgctgaacagatatgaaaggagagttactttgtgctggcaggaggtgg
gagtaacaacgaatgcctttctgggttgcatgagctttctagtgcctatg
ttctatgttcaaaactcatggactagtatctggtggggacagggactcgc
gatgtcatttaagacctgaagcagtggaggcatttcatttccaagaagca
caaggacccaccgtaaatgttctggttgggactgagaagctaggacgtga
gactcaggattggtatctgcatgaggtgagggaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_73910594_73911609
seq2: B6Ng01-090A06.b_46_1053

seq1  GAATTCAGATTCTATGGCAGAGCCACAGTACCCTTAACCATGGAGTATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATTCTATGGCAGAGCCACAGTACCCTTAACCATGGAGTATCT  50

seq1  CTCTAGCTCCTGCCCTTCCCGTTTAACAGTAAACAGTGGGCAACTGTTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGCTCCTGCCCTTCCCGTTTAACAGTAAACAGTGGGCAACTGTTGC  100

seq1  TTCCAGTATCTGCTCAGCCAGTGAGGCAGGGCATCCTTTAGGTTGCCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGTATCTGCTCAGCCAGTGAGGCAGGGCATCCTTTAGGTTGCCAGA  150

seq1  GCACCACATACCAAGTCTCTATGTCTATGTCTCGCCTGGCTAACAACAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCACATACCAAGTCTCTATGTCTATGTCTCGCCTGGCTAACAACAGT  200

seq1  GTGGACAAATGCCTTCTTTAATTCTTAGGGCCGCCCTTGCTTTCTCAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACAAATGCCTTCTTTAATTCTTAGGGCCGCCCTTGCTTTCTCAAGG  250

seq1  GATTACATGTAGTCATTATTTTCTAACTCCTTATCAAGTTAATTCTCAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACATGTAGTCATTATTTTCTAACTCCTTATCAAGTTAATTCTCAAC  300

seq1  AATGCAGCCTGAGTTCTTTCTATTCTCTCTTTTATTTATTTTTATGTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAGCCTGAGTTCTTTCTATTCTCTCTTTTATTTATTTTTATGTGTA  350

seq1  TGGGAGTTTTGCCTACAGGTATATCTGTGTGTCACATGTGTGCAGTGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGTTTTGCCTACAGGTATATCTGTGTGTCACATGTGTGCAGTGCCT  400

seq1  GAAAAAGTCAGAAGTCGGTGTTTGATCCCCTGGTAATGAGGTTGCAGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGTCAGAAGTCGGTGTTTGATCCCCTGGTAATGAGGTTGCAGATG  450

seq1  GTTGAGGGTCACCATGTAGGTGCTGGACTTGAACATAGGTCTTCTGTAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGGGTCACCATGTAGGTGCTGGACTTGAACATAGGTCTTCTGTAAG  500

seq1  AGCAGTCAGTGCTCTTACCCATTGAGCGTCTCTCCAGCTCAGCTCTTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTCAGTGCTCTTACCCATTGAGCGTCTCTCCAGCTCAGCTCTTTCA  550

seq1  AGTCTGCGATGCTACAGAAACATATTTCTTTCAGTCAGATAGGAAAAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGCGATGCTACAGAAACATATTTCTTTCAGTCAGATAGGAAAAATG  600

seq1  GCAGAGATCATACTTCATAAATTAAGATAAAGTTTACATTATTTGTTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGATCATACTTCATAAATTAAGATAAAGTTTACATTATTTGTTATA  650

seq1  AATTAAACCATTTTTACCCTAAATAACATATTTTCTATTTCTTACAAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAACCATTTTTACCCTAAATAACATATTTTCTATTTCTTACAAAAG  700

seq1  TGTTTGTAAGTACAGATTTGATGGTACAAAAACCATGAGTACTCTGCAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTAAGTACAGATTTGATGGTACAAAAACCATGAGTACTCTGCAGG  750

seq1  TGGGAAAGCAGGAGGTTAATCCTCAGTGCTCAGTGGTACTCAAACACACG  800
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAAGCA-GAGGTTAATCCTCAGTGCTCAGTGGTACTCAAACACACG  799

seq1  TGCCATGACATCAGGCTCAGCACTGTTGACTTGAGTGAGGGGCTGTTTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATGACATCAGGCTCAGCACTGTTGACTTGAGTGAGGGGCTGTTTGT  849

seq1  TTGTTTGTTTGTTTCTGGTTATACGGACATTTTTAAAAATCTCACAGTAC  900
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTGTTTGTTTGTTTCTGGGTATACGGACATTTTTAAAAATCTCACAGTAC  899

seq1  AATGCTTCTGATAGTGGAAGAGAGTAAGCAAATATCTCCTGGGAATCAAG  950
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AATGCTTCTGATAGTGGAAGAGAGTAAGCAAATATCTCCTGGGGATCAAG  949

seq1  AAAGAGCTTAGAAAGTTTCCTGTATGGAAGGAAGGAGCATCCAGAGACTG  1000
       |||||||||| |||||| |||||||||  | |||||||| |||||||||
seq2  -AAGAGCTTAG-AAGTTT-CTGTATGGA--GGAGGAGCAT-CAGAGACTG  993

seq1  CCCCACCCGGGGATGC  1016
       |||| ||||||||||
seq2  -CCCAACCGGGGATGC  1008

seq1: chr7_74011941_74013212
seq2: B6Ng01-090A06.g_67_1302 (reverse)

seq1  TGTTCCCTCACCTCATCCAGCTACCACAATCCT-TGGCTCACAGTCCCTC  49
      |||||||||||||||| ||| |||  |||||||  | ||||| ||||   
seq2  TGTTCCCTCACCTCATGCAGATAC--CAATCCTGAGTCTCAC-GTCC---  44

seq1  TCTGCTTCCTCCAGCTCCACAACCAGTGACATTTCTCACGCTGCGTCCCT  99
         |||||   ||| ||| |||||||  ||||||   ||| || |||| |
seq2  -TAGCTTC--TCAG-TCC-CAACCAG-AACATTT---ACGGTGGGTCCTT  85

seq1  CTGCTGGCTCTCTTCTGTAACTG-AATGCCCTTCCACCTGCCTCAGGGTT  148
       ||||     |||  || || || ||||||  |||| |||| |||||  |
seq2  GTGCT-----TCT--TGGAAATGAAATGCC--TCCA-CTGCTTCAGG--T  123

seq1  CTAAAATGACATCTGCCGAGTCCCTGTCCCCACGCAAGATACTAGTTCCA  198
      || ||||||||||   ||||||||||||||||  | ||||||||| ||||
seq2  CTTAAATGACATC--GCGAGTCCCTGTCCCCA--CCAGATACTAG-TCCA  168

seq1  TGAGTTTTGGACATTAGGACATAGGCAACTTTAGAAAGCCTCATGCAACC  248
      ||||||||| ||| ||| |||||||||    ||||||| |||||||||||
seq2  TGAGTTTTGAACA-TAGAACATAGGCA---CTAGAAAG-CTCATGCAACC  213

seq1  CAGAAAGGCATTCGTTTGTTACTCCCACCTTCCTGCCAGCACAAAGTAAC  298
      |||||||||||||| |||||||||||||| ||||||||||||||||||||
seq2  CAGAAAGGCATTCG-TTGTTACTCCCACC-TCCTGCCAGCACAAAGTAAC  261

seq1  TTCTCCTTTCATATCTGTTCAGCGTGTTTCCGCCCAGAACACGACGATAC  348
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TCTCCTTTCATATCTGTTCAGCGTGTTTCCGCCCAGAACACGACGATAC  310

seq1  CACCGGGGGACAAGCATAATGCTTCCGTCTCGGACATTGCTAAT-ACTCT  397
      |||| ||||||||||||||||||||||||||||||| ||||||| |||||
seq2  CACCAGGGGACAAGCATAATGCTTCCGTCTCGGACAATGCTAATAACTCT  360

seq1  GTCTTGAGAG-AGAGGCTGAAATATCAACACGGAGACAATGAGACAG-AG  445
      ||| |||||| |||||||||||||||||||||||||||||||||||| ||
seq2  GTC-TGAGAGAAGAGGCTGAAATATCAACACGGAGACAATGAGACAGAAG  409

seq1  CACCATGCCATTTTTTATGGCTGCCCCTGAACCCTTTTTTCCCACACACC  495
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CACCATGCCATTTTTTATAGCTGCCCCTGAACCCTTTTTTCCCACACACC  459

seq1  ATTCTGCCAAACAGAGGAGCTGGGCAAGCAGCTATGCCATCTCTCCCCGG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGCCAAACAGAGGAGCTGGGCAAGCAGCTATGCCATCTCTCCCCGG  509

seq1  TTCTCCTCTGGGCTCTTATGCAACTCACACCCATCCCACTTTAGTAACTC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTCTGGGCTCTTATGCAACTCACACCCATCCCACTTTAGTAACTC  559

seq1  AAAGCAGAGAAGGCCTCCAGCTTAAATAGGAAAATCTGCCTGGCGCTGCA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGAGAAGGCCTCCAGCTTAAATAGGAAAATCTGCCTGGCGCTGCA  609

seq1  GACGGATCAAAAAAATGCATGGTTTATTATTTAAAGTGAGCACTGGCCGG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGGATCAAAAAAATGCATGGTTTATTATTTAAAGTGAGCACTGGCCGG  659

seq1  AGCTGTCCAGGTGGCTCAGACACTTCTGGCAGCTGGTCCTCTGTGAGACT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTCCAGGTGGCTCAGACACTTCTGGCAGCTGGTCCTCTGTGAGACT  709

seq1  GGAGGAGGGTTGTGGCCCCTCAGAATGCCTGGTCCAGGAGGCTGGTACAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGGGTTGTGGCCCCTCAGAATGCCTGGTCCAGGAGGCTGGTACAT  759

seq1  GTATGGCCTACGTACTCGTTTGGTGTTCCAGACAGCAGTGGGGGGTGGGC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGCCTACGTACTCGTTTGGTGTTCCAGACAGCAGTGGGGGGTGGGC  809

seq1  AAAGTTCCTACCAGCTCTCCTTGAAGTGTCTGATTTTTGAATCAGCAGCA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTCCTACCAGCTCTCCTTGAAGTGTCTGATTTTTGAATCAGCAGCA  859

seq1  TTCATGTTCCCTCCGAGGGAGAGAACAGACAAGAGCAGAAGAGAGAATGT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTTCCCTCCGAGGGAGAGAACAGACAAGAGCAGAAGAGAGAATGT  909

seq1  GTGACCAAGCAAAGGAGTGTAGCAGGGCTTCCCTCCCAGCAGGAGGCCTC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCAAGCAAAGGAGTGTAGCAGGGCTTCCCTCCCAGCAGGAGGCCTC  959

seq1  AAGCCAGAAAGTCCACCCGAGGCAGGGGCAAGAGTAATGGACTTAAAAAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGAAAGTCCACCCGAGGCAGGGGCAAGAGTAATGGACTTAAAAAA  1009

seq1  AAGTGGCTTTAGGTTGCATATCCCTCCCCCTTCTGCAAAGAAGTCTAGCT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGCTTTAGGTTGCATATCCCTCCCCCTTCTGCAAAGAAGTCTAGCT  1059

seq1  TTTTCAGTACACTAATTTCTCATGGAAAATCCCAGAAAAAAAAAAAAAAG  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGTACACTAATTTCTCATGGAAAATCCCAGAAAAAAAAAAAAAAG  1109

seq1  TCTCATCGGGACAGCTGCTGCCCAGTTTTGTTGGGCGATTTCCAGCCGCA  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATCGGGACAGCTGCTGCCCAGTTTTGTTGGGCGATTTCCAGCCGCA  1159

seq1  GATGAAGTGGGCTCATTTTGCACAGCCTTCTTCCTAAGCAACGGGCAATT  1245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAGTGGGCTCATTTTGCACAGCCTTCTTCCTAAGCAACGGGCAATT  1209

seq1  TCTTGTGCACAACCAGACAGGGAATTC  1272
      |||||||||||||||||||||||||||
seq2  TCTTGTGCACAACCAGACAGGGAATTC  1236