BAC Information

Click to search

BAC

Clone NameB6Ng01-090D17
Chromosome7 (Build37)
Map Location 34,567,018 - 34,568,141
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043373, LOC668410, EG624439, LOC100043376, LOC100043379, LOC100043383, EG668411, LOC100043850, LOC100043386, LOC668416, EG668526, LOC100043388, LOC270234, EG668419, EG668422, EG546954, LOC100043856, LOC100043857, EG545947, EG434676, EG668431, Abpd, EG545948, LOC435963, LOC435962, EG626970, LOC100043859, LOC627004, LOC100043398, LOC100043401, Scgb2b1, LOC668440, Abpz, LOC100043860
Downstream geneLOC627079, LOC635803, Abpg, LOC100043864, LOC100043865, Abpb, Abpa, LOC100043866, LOC100043867, LOC100043868, Wtip, Sae2, LOC100043410, Pdcd2l, Gpi1, 4931406P16Rik, EG619734, Lsm14a, LOC668460, LOC668464, Kctd15, Chst8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090D17.bB6Ng01-090D17.g
ACCDH902590DH902591
length1,2471,116
definitionDH902590|Mus musculus domesticus DNA, BAC clone: B6Ng01-090D17, 5' end.DH902591|Mus musculus domesticus DNA, BAC clone: B6Ng01-090D17, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaatacctcacttaaagagatacaggagaacactgctaaagagtt
acaagtccttaaagaaaaacaggaaaacactgctaaagagttacaagtcc
ttaaagaaaaacaggagaacacaaccaaacaggtagaagtccttatagaa
aaacaggaaaacacacccaaacaggtgatggaaatgaacaaaaccatact
agacctaaaaagggaagtagacacaataaagaaaacccaaagtgaggcaa
cgctggagatagaaaccctaggaaagaaatctggaaccatagatgccagc
atcagcaacagaatacaagagatggaagagagaatctcaggtgcagaaga
ctccatagagaacatcggcacaacaatcaaagaaaatggaaaatgcaaaa
agatcctaactcaaaacatccaggaaatccaggacacaatgagaagacca
aacctacggataataggagtggatgagaacgaagattttcaactcaaagg
accagcaaacatcttcaacaaaattattgaagaaaacttcccaaatctaa
agaaagagatgcccatgaacatacaagaagcctacagaactccaaataga
ctggaccagaaaagaaattcctcccgacacataataatcagaacaacaaa
tgcactaaataaagatagaatactaaaagcagtaagggaaaaaggtcaag
taacatataaaggcaagcctatcagaattacaccagatttttcaccagag
actatgaaagccagaagagcctggacagatgttatacagacactaagaga
acacaaatgccagcccaggctactatacccagccaaactctcaattacca
tagatggagaaaccaaagtattccaccacaaactaaattcacccattatc
tctccacgaatccagcccttcaaaggataataacagaaaaaaccaataca
aggatgggaaccacgtcctagaaaaaacagaagataatccctcaacaacc
aaaaagagacagccacagaacagaatgcaactttacacaaaataacagga
gcacaatacctttcctaatatcctaattcatggactcatcccattaaaag
acatgactacgactggctaccaacgggacccacattctgctgctacggga
aaccatcttcagactggaagtaaggcgtggaaacgattgcagcaattgtt
cttgaaggaagcaggtctggagtatgacacttcttatatgatatctc
gaattccaaaaaatgactttctgtttctggtgttttcacagtaaccacat
ggcaggattcagtcattggaccacaaagaagcaacagacaggtcataact
caagattgttttgttcttttatttatttacatttcaaatgttttcccact
ctccagtttcccctctggaatccctccatcccattcactcccctttccct
ttatgattgtgcaccatctaacacccacccactcctgtctcacccttcta
ctatcccccctatgttcaagcattaatcctccacaagaccaaggacctcc
cctcccattgatgccagataaggcaatcctctactacatatgtagttaga
gccatggatacctccatgtgtactcttttgttggtggtttattccctgag
aactctggttacttgatactgttgttattcctatggggtttccagaagtc
cctcaacagaagaataaatactaaaaatgtggtacatttacacagtggag
tactactcagctattaaaaacaatgactttatgaaactcagcattcttta
aacatgctttggagactggctcatagaacttcactaagcaggtcaaatgg
aaagattatactgaaatcagtgaagggcagacattaccaggtggaactgg
gtactcaggatgctcgtgtcaaccttgcccttcacaattagtacttggga
aaattaacagaagccagttaatgggaaacccatagtgttgagaacaaact
gtctctaacatcacacttacataggctgacgtggctcctcacttagaaac
tccaatttggtagccatggtagaagtgggtgagtatgtaagtgtttctac
tagcatgcgaggtattctggggagcagaaggcaaaggaatcatacagctt
ctaagaggaaaaggtacccctggtggaatgccattttgagacatatgagc
ttaggaccacccaccttttggaaggaggcctccatagcagatgtgttacg
gctccagaggaggtatccccagatgagctgaagcttaggagcctcagact
gctccacttcctcctcctctttgttgcctctttcttctttcctcttctga
tgaagtacacccagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_34567018_34568141
seq2: B6Ng01-090D17.g_71_1186

seq1  GAATTCCAAAAAATGACTTTCTGTTTCTGGTGTTTTCACAGTAACCACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAAAATGACTTTCTGTTTCTGGTGTTTTCACAGTAACCACAT  50

seq1  GGCAGGATTCAGTCATTGGACCACAAAGAAGCAACAGACAGGTCATAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGATTCAGTCATTGGACCACAAAGAAGCAACAGACAGGTCATAACT  100

seq1  CAAGATTGTTTTGTTCTTTTATTTATTTACATTTCAAATGTTTTCCCACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATTGTTTTGTTCTTTTATTTATTTACATTTCAAATGTTTTCCCACT  150

seq1  CTCCAGTTTCCCCTCTGGAATCCCTCCATCCCATTCACTCCCCTTTCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGTTTCCCCTCTGGAATCCCTCCATCCCATTCACTCCCCTTTCCCT  200

seq1  TTATGATTGTGCACCATCTAACACCCACCCACTCCTGTCTCACCCTTCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGATTGTGCACCATCTAACACCCACCCACTCCTGTCTCACCCTTCTA  250

seq1  CTATCCCCCCTATGTTCAAGCATTAATCCTCCACAAGACCAAGGACCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCCCCCTATGTTCAAGCATTAATCCTCCACAAGACCAAGGACCTCC  300

seq1  CCTCCCATTGATGCCAGATAAGGCAATCCTCTACTACATATGTAGTTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCATTGATGCCAGATAAGGCAATCCTCTACTACATATGTAGTTAGA  350

seq1  GCCATGGATACCTCCATGTGTACTCTTTTGTTGGTGGTTTATTCCCTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGGATACCTCCATGTGTACTCTTTTGTTGGTGGTTTATTCCCTGAG  400

seq1  AACTCTGGTTACTTGATACTGTTGTTATTCCTATGGGGTTTCCAGAAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTGGTTACTTGATACTGTTGTTATTCCTATGGGGTTTCCAGAAGTC  450

seq1  CCTCAACAGAAGAATAAATACTAAAAATGTGGTACATTTACACAGTGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAACAGAAGAATAAATACTAAAAATGTGGTACATTTACACAGTGGAG  500

seq1  TACTACTCAGCTATTAAAAACAATGACTTTATGAAACTCAGCATTCTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACTCAGCTATTAAAAACAATGACTTTATGAAACTCAGCATTCTTTA  550

seq1  AACATGCTTTGGAGACTGGCTCATAGAACTTCACTAAGCAGGTCAAATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGCTTTGGAGACTGGCTCATAGAACTTCACTAAGCAGGTCAAATGG  600

seq1  AAAGATTATACTGAAATCAGTGAAGGGCAGACATTACCAGGTGGAACTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTATACTGAAATCAGTGAAGGGCAGACATTACCAGGTGGAACTGG  650

seq1  GTACTCAGGATGCTCGTGTCAACCTTGCCCTTCACAATTAGTACTTGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCAGGATGCTCGTGTCAACCTTGCCCTTCACAATTAGTACTTGGGA  700

seq1  AAATTAACAGAAGCCAGTTAATGGGAAACCCATAGTGTTGAGAACAAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAACAGAAGCCAGTTAATGGGAAACCCATAGTGTTGAGAACAAACT  750

seq1  GTCTCTAACATCACACTTACATAGGCTGACGTGGCTCCTCACTTAGAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTAACATCACACTTACATAGGCTGACGTGGCTCCTCACTTAGAAAC  800

seq1  TCCAATTTGGTAGCCATGGTAG-AGTGGGTGAAGTATGTAAGTGTTTCTA  849
      |||||||||||||||||||||| |||||||| ||||||||||||||||||
seq2  TCCAATTTGGTAGCCATGGTAGAAGTGGGTG-AGTATGTAAGTGTTTCTA  849

seq1  CTAGCATGCGAGGTATTCT-GGGAGCAGAAGGCAAAGGAATCATACAGCT  898
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTAGCATGCGAGGTATTCTGGGGAGCAGAAGGCAAAGGAATCATACAGCT  899

seq1  TCTAAGAGG-AAAGGTACCCCTGGTGGAATGGCATTCTGAGACATATGAG  947
      ||||||||| ||||||||||||||||||||| |||| |||||||||||||
seq2  TCTAAGAGGAAAAGGTACCCCTGGTGGAATGCCATTTTGAGACATATGAG  949

seq1  CTTAGGAACCACACACC-TTTGGAAGGAAGCCTCCATAGCAGATGTGTTA  996
      |||||| ||||| |||| |||||||||| |||||||||||||||||||||
seq2  CTTAGG-ACCACCCACCTTTTGGAAGGAGGCCTCCATAGCAGATGTGTTA  998

seq1  CGGCTCCCAGAGGAAGGTATCCCCAGATGAGCTGAGAGCTTAGGAGCCTC  1046
      ||||| ||||||| ||||||||||||||||||||| ||||||||||||||
seq2  CGGCT-CCAGAGG-AGGTATCCCCAGATGAGCTGA-AGCTTAGGAGCCTC  1045

seq1  AGGACTGCTCCACTTCTTTCCTTCTCCT-TTTGTTGCTTCTTTTCTTCTT  1095
      | |||||||||||    ||||| ||||| |||||||| || |||||||||
seq2  A-GACTGCTCCAC----TTCCTCCTCCTCTTTGTTGCCTC-TTTCTTCTT  1089

seq1  TCCTTCTTCTGATGAGAGTAACACCAGGA  1124
      ||| ||||||||||| ||||   ||||||
seq2  TCC-TCTTCTGATGA-AGTACACCCAGGA  1116