BAC Information

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BAC

Clone NameB6Ng01-091O18
Chromosome7 (Build37)
Map Location 142,669,110 - 142,812,989
singlet/doubletdoublet
Overlap geneClrn3, Ptpre
Upstream geneLOC100043248, LOC100043699, LOC668750, Dock1, B830028B13Rik, EG668693, LOC100043254, Foxi2
Downstream geneMki67, LOC668764
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-091O18.bB6Ng01-091O18.g
ACCDH903822DH903823
length1,1181,109
definitionDH903822|Mus musculus domesticus DNA, BAC clone: B6Ng01-091O18, 5' end.DH903823|Mus musculus domesticus DNA, BAC clone: B6Ng01-091O18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,669,110 - 142,670,229)(142,811,876 - 142,812,989)
sequence
gaattcaagaagcactccctttccagagagtgcacaggaagaagccagtg
tccccaggcgcattcttcaacaatcaacaaagtgaagctacagaaatgac
cagatgagttggttcagggccccaggtggagacccggggtcctgggaaag
tccctctgcactccagggctcacctgtcttcttttgtcaatgcccatcac
cattttcagagttgccctgggcagtgcaagtcgggggaggggcttccaag
ggggaggggcttccaaggcagaaggtgcagctgtgcaggaagggtgagtc
ttgtggcttcaagagcacaagagatgaatcttcctaaggttgctgcaaga
aaaagagacttctctatgggtaatcacctcatctcaggagagaagctggg
acaccagtggacatttaaatctgatctctcatcaccagcaacacatgtgg
gtgcacacacatgtatacacaaatgctacagctacacctatagatctcac
tcagggtcatcacctgagtcacttggcaatgtctggagacctatctactc
accacagctaaaggaggaagcagtggacaggggatgagtggacagaggtc
atacacgcagatactgcgcttgagatagcctcacaacagagaatggtctg
aagatgttgtgctggagatagttccacaacagagaatgatctagcctcag
atatcaaggcttagaacccagttataaacctacctatagacttttgtcca
acaagatcttctatttacagccagcctccctggccaccatttgaaacctc
tgtaaaacccactcacgtggttgtcattggctacaaaggtgatggcaggc
agctgacagatctggcaaagcagtttcttgttgctttattagtggagatg
ctacggggacacacatctacacaccatcatagtatctgatcactcacagt
caacgtctcggtagaaaccccgagctaagctcttttgggatgatgccaaa
aggactttggagacatccagagtccttaaaaattgacagagctggagaat
gttctggggcacagggtgaagaacagaagagaccgcccctctgctcttca
tgggcagaacaaaaacag
gaattcttagagtgcacctgggagcagctaagccgttgggttgggtggag
agtcaggttgtaatgctttcttgtctatgtacggtaaaaagactgaggct
tacagataaacggacttaaaggaattacctcataacggtgaagcctggta
tttattctcagtgggaaggctgatctcataaataccagaagctcttcaca
ggtaagccagagtctgtgttgcttaaccacacagcagcagcattagcaat
ttaaagacagtctgaacatatgcaaaacagtcaaaaggacataggcttaa
gccattagcagtatgcttaaaaagcaaaacacaaaaaacaaaacaaaaca
aaacaaaaaaaaaaaaaaaggagaggaaagaagcaattcagctccggaaa
acaacaaaacaaaacaaaacaaaaacaacaaaacccaaataaacaacaac
aaaaaacttcccttcccagtgtgggaacgtcaaatcatggctcagtccac
ttcctgttggatagtttctaaacaacctgcaacatttttatctttgtcca
aacacatatgtccaaatgttaagcctctcctcgtagcttactggatatgt
gggttgttttgttttgtttgtttgagaccaggtttctctgtgtagctctg
gctgtcctggaactcactctgtagaccacagatccgcctgcctctgctct
ccaagggttgggattaacagcatgcccccccaccccacggcccgactgac
atctggctcctatattttgagctcaagagaaattgcttatgtgttaggag
tctacgaaaacaagaaggcacccataggcttgtttcatctgcgctgtgcc
gagaacctgacggcttcatggatgctgcgttttcttttcagcgatagctt
gaactcctgcacacactggagacagactgctgtgacgtttctgagttact
gagtgcacgttagatagtaaattaaagatggttggaaacttcgtattgtt
ctcacagtgtaaagcagtgatgggaagcgccatctggaaattcccgtttc
tcatctgttattgcacgtctatgcataaagcaggtaatcaattctcacca
tgtctctag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_142669110_142670229
seq2: B6Ng01-091O18.b_48_1165

seq1  GAATTCAAGAAGCACTCCCTTTCCAGAGAGTGCACAGGAAGAAGCCAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAAGCACTCCCTTTCCAGAGAGTGCACAGGAAGAAGCCAGTG  50

seq1  TCCCCAGGCGCATTCTTCAACAATCAACAAAGTGAAGCTACAGAAATGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAGGCGCATTCTTCAACAATCAACAAAGTGAAGCTACAGAAATGAC  100

seq1  CAGATGAGTTGGTTCAGGGCCCCAGGTGGAGACCCGGGGTCCTGGGAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGAGTTGGTTCAGGGCCCCAGGTGGAGACCCGGGGTCCTGGGAAAG  150

seq1  TCCCTCTGCACTCCAGGGCTCACCTGTCTTCTTTTGTCAATGCCCATCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCTGCACTCCAGGGCTCACCTGTCTTCTTTTGTCAATGCCCATCAC  200

seq1  CATTTTCAGAGTTGCCCTGGGCAGTGCAAGTCGGGGGAGGGGCTTCCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCAGAGTTGCCCTGGGCAGTGCAAGTCGGGGGAGGGGCTTCCAAG  250

seq1  GGGGAGGGGCTTCCAAGGCAGAAGGTGCAGCTGTGCAGGAAGGGTGAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGGGCTTCCAAGGCAGAAGGTGCAGCTGTGCAGGAAGGGTGAGTC  300

seq1  TTGTGGCTTCAAGAGCACAAGAGATGAATCTTCCTAAGGTTGCTGCAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGCTTCAAGAGCACAAGAGATGAATCTTCCTAAGGTTGCTGCAAGA  350

seq1  AAAAGAGACTTCTCTATGGGTAATCACCTCATCTCAGGAGAGAAGCTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGACTTCTCTATGGGTAATCACCTCATCTCAGGAGAGAAGCTGGG  400

seq1  ACACCAGTGGACATTTAAATCTGATCTCTCATCACCAGCAACACATGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAGTGGACATTTAAATCTGATCTCTCATCACCAGCAACACATGTGG  450

seq1  GTGCACACACATGTATACACAAATGCTACAGCTACACCTATAGATCTCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACACACATGTATACACAAATGCTACAGCTACACCTATAGATCTCAC  500

seq1  TCAGGGTCATCACCTGAGTCACTTGGCAATGTCTGGAGACCTATCTACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGTCATCACCTGAGTCACTTGGCAATGTCTGGAGACCTATCTACTC  550

seq1  ACCACAGCTAAAGGAGGAAGCAGTGGACAGGGGATGAGTGGACAGAGGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAGCTAAAGGAGGAAGCAGTGGACAGGGGATGAGTGGACAGAGGTC  600

seq1  ATACACGCAGATACTGCGCTTGAGATAGCCTCACAACAGAGAATGGTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACGCAGATACTGCGCTTGAGATAGCCTCACAACAGAGAATGGTCTG  650

seq1  AAGATGTTGTGCTGGAGATAGTTCCACAACAGAGAATGATCTAGCCTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGTTGTGCTGGAGATAGTTCCACAACAGAGAATGATCTAGCCTCAG  700

seq1  ATATCAAGGCTTAGAACCCAGTTATAAACCTACCTATAGACTTTTGTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAAGGCTTAGAACCCAGTTATAAACCTACCTATAGACTTTTGTCCA  750

seq1  ACAAGATCTTCTATTTACAGCCAGCCTCCCTGGCCACCATTTGAAACCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGATCTTCTATTTACAGCCAGCCTCCCTGGCCACCATTTGAAACCTC  800

seq1  TGTAAAACCCACTCACGTGGTTGTCATTGGCTACAAAGGTGATGGCAGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAACCCACTCACGTGGTTGTCATTGGCTACAAAGGTGATGGCAGGC  850

seq1  AGCTGACAGATCTGGCAAAGCAGTTTCTTGTTGCTTTATTAGTGGAGATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGACAGATCTGGCAAAGCAGTTTCTTGTTGCTTTATTAGTGGAGATG  900

seq1  CTACGGGGACACACATCTACACACCATCATAGTATCTGATCACTCACAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACGGGGACACACATCTACACACCATCATAGTATCTGATCACTCACAGT  950

seq1  CAACGTCTCGGTAGAAACCCCGAGCTAAGCTCTTTT-GGATGATGCCAAA  999
      |||||||||||||||||||||||||||||||||||| |||||||||| ||
seq2  CAACGTCTCGGTAGAAACCCCGAGCTAAGCTCTTTTGGGATGATGCC-AA  999

seq1  AAGGACTTTGGAGACATCCAGAGTCCTTAAAAATTGGCAGGAGGCTGGAG  1049
      |||||||||||||||||||||||||||||||||||| |||   |||||||
seq2  AAGGACTTTGGAGACATCCAGAGTCCTTAAAAATTGACAG--AGCTGGAG  1047

seq1  -ATGTTCCTGGGGCACAGGGGTGAAG-ACAGAAGGGAGACCG-CCCTCTG  1096
       ||||| |||||||||| |||||||| ||||||  ||||||| |||||||
seq2  AATGTT-CTGGGGCACA-GGGTGAAGAACAGAA--GAGACCGCCCCTCTG  1093

seq1  CTC-TCATGTGCAGAACAAAAACAG  1120
      ||| ||||| |||||||||||||||
seq2  CTCTTCATGGGCAGAACAAAAACAG  1118

seq1: chr7_142811876_142812989
seq2: B6Ng01-091O18.g_68_1176 (reverse)

seq1  CTAGAGACATGGGTTTGAAGGAATTGATTACCTGCTGTAATGCCATAGAC  50
      ||||||||||||   |||  |||||||||||||||| | ||| |||||||
seq2  CTAGAGACATGG---TGA--GAATTGATTACCTGCT-TTATG-CATAGAC  43

seq1  GTGCAAT-ACAGATGAGAAA-GGGGATTTCCAGGATGCCGCTT-CCATCA  97
      ||||||| |||||||||||| ||| ||||||| |||| ||||| ||||||
seq2  GTGCAATAACAGATGAGAAACGGGAATTTCCA-GATGGCGCTTCCCATCA  92

seq1  CTGCTTTACACTGTGAGA--CATACGAAGTTTCCAACCATCTTTAATTTA  145
      ||||||||||||||||||   |||||||||||||||||||||||||||||
seq2  CTGCTTTACACTGTGAGAACAATACGAAGTTTCCAACCATCTTTAATTTA  142

seq1  CTATCTAACGTTGGCACTCAGTAACTCAGAAACGTCACAGCAGTTCTGTC  195
      |||||||||||  |||||||||||||||||||||||||||||| ||||||
seq2  CTATCTAACGT--GCACTCAGTAACTCAGAAACGTCACAGCAG-TCTGTC  189

seq1  TCCAGTGTGTGCAGGAGTTCAAGCTATCGCTGAAAAG-AAACGCAGCATC  244
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TCCAGTGTGTGCAGGAGTTCAAGCTATCGCTGAAAAGAAAACGCAGCATC  239

seq1  CATGAAGCCGTCAGGTTCTCGGCACAGCGCAGATGAAACAAGCCTATGGG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGCCGTCAGGTTCTCGGCACAGCGCAGATGAAACAAGCCTATGGG  289

seq1  TGCCTTCTTGTTTTCGTAGACTCCTAACACATAAGCAATTTCTCTTGAGC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTCTTGTTTTCGTAGACTCCTAACACATAAGCAATTTCTCTTGAGC  339

seq1  TCAAAATATAGGAGCCAGATGTCAGTCGGGCCGTGGGGTGGGGGGGCATG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATATAGGAGCCAGATGTCAGTCGGGCCGTGGGGTGGGGGGGCATG  389

seq1  CTGTTAATCCCAACCCTTGGAGAGCAGAGGCAGGCGGATCTGTGGTCTAC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAATCCCAACCCTTGGAGAGCAGAGGCAGGCGGATCTGTGGTCTAC  439

seq1  AGAGTGAGTTCCAGGACAGCCAGAGCTACACAGAGAAACCTGGTCTCAAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGAGTTCCAGGACAGCCAGAGCTACACAGAGAAACCTGGTCTCAAA  489

seq1  CAAACAAAACAAAACAACCCACATATCCAGTAAGCTACGAGGAGAGGCTT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAAACAAAACAACCCACATATCCAGTAAGCTACGAGGAGAGGCTT  539

seq1  AACATTTGGACATATGTGTTTGGACAAAGATAAAAATGTTGCAGGTTGTT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTGGACATATGTGTTTGGACAAAGATAAAAATGTTGCAGGTTGTT  589

seq1  TAGAAACTATCCAACAGGAAGTGGACTGAGCCATGATTTGACGTTCCCAC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAACTATCCAACAGGAAGTGGACTGAGCCATGATTTGACGTTCCCAC  639

seq1  ACTGGGAAGGGAAGTTTTTTGTTGTTGTTTATTTGGGTTTTGTTGTTTTT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGAAGGGAAGTTTTTTGTTGTTGTTTATTTGGGTTTTGTTGTTTTT  689

seq1  GTTTTGTTTTGTTTTGTTGTTTTCCGGAGCTGAATTGCTTCTTTCCTCTC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTTTGTTTTGTTGTTTTCCGGAGCTGAATTGCTTCTTTCCTCTC  739

seq1  CTTTTTTTTTTTTTTTGTTTTGTTTTGTTTTGTTTTTTGTGTTTTGCTTT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTTTTTTTTTGTTTTGTTTTGTTTTGTTTTTTGTGTTTTGCTTT  789

seq1  TTAAGCATACTGCTAATGGCTTAAGCCTATGTCCTTTTGACTGTTTTGCA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCATACTGCTAATGGCTTAAGCCTATGTCCTTTTGACTGTTTTGCA  839

seq1  TATGTTCAGACTGTCTTTAAATTGCTAATGCTGCTGCTGTGTGGTTAAGC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTCAGACTGTCTTTAAATTGCTAATGCTGCTGCTGTGTGGTTAAGC  889

seq1  AACACAGACTCTGGCTTACCTGTGAAGAGCTTCTGGTATTTATGAGATCA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGACTCTGGCTTACCTGTGAAGAGCTTCTGGTATTTATGAGATCA  939

seq1  GCCTTCCCACTGAGAATAAATACCAGGCTTCACCGTTATGAGGTAATTCC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCCCACTGAGAATAAATACCAGGCTTCACCGTTATGAGGTAATTCC  989

seq1  TTTAAGTCCGTTTATCTGTAAGCCTCAGTCTTTTTACCGTACATAGACAA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTCCGTTTATCTGTAAGCCTCAGTCTTTTTACCGTACATAGACAA  1039

seq1  GAAAGCATTACAACCTGACTCTCCACCCAACCCAACGGCTTAGCTGCTCC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCATTACAACCTGACTCTCCACCCAACCCAACGGCTTAGCTGCTCC  1089

seq1  CAGGTGCACTCTAAGAATTC  1114
      ||||||||||||||||||||
seq2  CAGGTGCACTCTAAGAATTC  1109