BAC Information

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BAC

Clone NameB6Ng01-092L08
Chromosome19 (Build37)7 (Build37)
Map Location 48,480,697 - 48,481,13383,857,976 - 83,859,054
singlet/doubletsingletsinglet
Overlap geneSorcs3
Upstream geneSh3pxd2a, Obfc1, Slk, Col17a1, 6330577E15Rik, D19Ertd652e, LOC677174, Gsto1, Gsto2, BC063749, Gm969, LOC670576
Downstream geneLOC100042896
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092L08.bB6Ng01-092L08.g
ACCDH904393DH904394
length1661,061
definitionDH904393|Mus musculus domesticus DNA, BAC clone: B6Ng01-092L08, 5' end.DH904394|Mus musculus domesticus DNA, BAC clone: B6Ng01-092L08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(48,480,697 - 48,481,133)(83,857,976 - 83,859,054)
sequence
agtttttcttccacataatctcatgagtttatacttaatttgaccccaat
ctttatatatatgtgtatatatatatgtatatatatgtatatatatacat
acacacatatacacatatatatgtgagacatatatgtgacatgtatatat
gtgatgtatgtgtata
gaattcaataatttatggattttttttttggtgtcagtgagggctcctga
aacagatgctttgtagatacttggagaaggctatataggagtgaggactg
tatctgggaaatgcagtttgtaaaaagggttcttggaaggtaattacata
tgtcactaatatcatttcccctattgagatatttactattctcaaaacct
ggattgaatgctgcctgcccaagactgtgtaccagtggaatctctagggc
tttgtgagccttggttggcttaattggaagtgttgctctttggggattcc
atcacattctccagaacttgccttctcccagatccagccttgctttcatt
ttcctgtggcaattttataaataatgcagaggtctcaaggcagagaagga
gcaatgagacccagatgtcaagatcggaaaacacagcagctcaaagctag
cgagcaaagcagagtggtaaacacaatcagatctaggtgagccatgggga
gctggggaaacgccaagggaagcgtttgaacagggctaacctcatgaaga
tggaggcccaattagcttgcagagaaaccagacttggaatgggaaggagt
gtgcagagcatagcaatgttagcctgatcaaattctttgctggacgagga
ataacagtactaatattttcatgaattatattaaccttataattaatctc
agaaaaaattccttgggagattcctagggagagggatagggagtagagct
ttaatccaaagtgcatcatttacctttggatgaagaagaaattaaagctc
tgggaggtgaatcagttcagaagtaaaaatcaagcactttagcaaagcaa
agctaaacacactgtatgaaggcttgaaatccccatttcatttcttcttc
tttttttctttttcctttttgtcttggagatagtataattattggctatt
atttaaaccttaattcagtatataccaacttcatctcacatgtcttaacc
cacttacttcttcagtctgcgattttctcccttacaacattcctttctgt
attatttaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_48480697_48481133
seq2: B6Ng01-092L08.b_114_218 (reverse)

seq1  TATACACATATGTTACATACATGCACACACACATATACACACACATACAC  50
                                       |||||||| |||| |||
seq2  ---------------------------------TATACACATACAT-CAC  16

seq1  ACACACACA---CACACACA---CACACATATATATATATATATATATAT  94
      | | | |||   |||| | |   | ||||||||||| | ||||| | | |
seq2  ATATATACATGTCACATATATGTCTCACATATATATGTGTATATGTGTGT  66

seq1  ATATATATATATATATATATATACATGCATATGTGTATATGTGTGTGTTT  144
      || |||||||||| ||||||||||||  |||| |  | |           
seq2  ATGTATATATATACATATATATACATATATATATACACA-----------  105

seq1  ACACTTTGTTCTGTGCGTACCCTTTTCCTGGTCCTCTCTGGGCCTCTCTT  194
                                                        
seq2  --------------------------------------------------  105

seq1  GATGAGATTCTTGCTTATAGTTTATGAGATTCTTCCTTCCCATCAACAGT  244
                                                        
seq2  --------------------------------------------------  105

seq1  GCTCTCGTCCTCTTGCATAATCCTTGAGATGATCCTTGGCTTCTCCTCCT  294
                                                        
seq2  --------------------------------------------------  105

seq1  CCCTTGCCATACTTCACTTTCTACATTCTTGACCTACACGGACATCCCCA  344
                                                        
seq2  --------------------------------------------------  105

seq1  CGTCCACACCACCACACATGCACACAATGCACATATTTGTCTGTGCATAT  394
                                                        
seq2  --------------------------------------------------  105

seq1  ATTTACATACTTATTCATGTATATATATATATATATATACACA  437
                                                 
seq2  -------------------------------------------  105

seq1: chr7_83857976_83859054
seq2: B6Ng01-092L08.g_69_1129

seq1  GAATTCAATAATTTATGGATTTTTTTTTTGGTGTCAGTGAGGGCTCCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAATTTATGGATTTTTTTTTTGGTGTCAGTGAGGGCTCCTGA  50

seq1  AACAGATGCTTTGTAGATACTTGGAGAAGGCTATATAGGAGTGAGGACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGATGCTTTGTAGATACTTGGAGAAGGCTATATAGGAGTGAGGACTG  100

seq1  TATCTGGGAAATGCAGTTTGTAAAAAGGGTTCTTGGAAGGTAATTACATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGGGAAATGCAGTTTGTAAAAAGGGTTCTTGGAAGGTAATTACATA  150

seq1  TGTCACTAATATCATTTCCCCTATTGAGATATTTACTATTCTCAAAACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTAATATCATTTCCCCTATTGAGATATTTACTATTCTCAAAACCT  200

seq1  GGATTGAATGCTGCCTGCCCAAGACTGTGTACCAGTGGAATCTCTAGGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGAATGCTGCCTGCCCAAGACTGTGTACCAGTGGAATCTCTAGGGC  250

seq1  TTTGTGAGCCTTGGTTGGCTTAATTGGAAGTGTTGCTCTTTGGGGATTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGAGCCTTGGTTGGCTTAATTGGAAGTGTTGCTCTTTGGGGATTCC  300

seq1  ATCACATTCTCCAGAACTTGCCTTCTCCCAGATCCAGCCTTGCTTTCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACATTCTCCAGAACTTGCCTTCTCCCAGATCCAGCCTTGCTTTCATT  350

seq1  TTCCTGTGGCAATTTTATAAATAATGCAGAGGTCTCAAGGCAGAGAAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTGGCAATTTTATAAATAATGCAGAGGTCTCAAGGCAGAGAAGGA  400

seq1  GCAATGAGACCCAGATGTCAAGATCGGAAAACACAGCAGCTCAAAGCTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGAGACCCAGATGTCAAGATCGGAAAACACAGCAGCTCAAAGCTAG  450

seq1  CGAGCAAAGCAGAGTGGTAAACACAATCAGATCTAGGTGAGCCATGGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCAAAGCAGAGTGGTAAACACAATCAGATCTAGGTGAGCCATGGGGA  500

seq1  GCTGGGGAAACGCCAAGGGAAGCGTTTGAACAGGGCTAACCTCATGAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGGAAACGCCAAGGGAAGCGTTTGAACAGGGCTAACCTCATGAAGA  550

seq1  TGGAGGCCCAATTAGCTTGCAGAGAAACCAGACTTGGAATGGGAAGGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGCCCAATTAGCTTGCAGAGAAACCAGACTTGGAATGGGAAGGAGT  600

seq1  GTGCAGAGCATAGCAATGTTAGCCTGATCAAATTCTTTGCTGGACGAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGAGCATAGCAATGTTAGCCTGATCAAATTCTTTGCTGGACGAGGA  650

seq1  ATAACAGTACTAATATTTTCATGAATTATATTAACCTTATAATTAATCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAGTACTAATATTTTCATGAATTATATTAACCTTATAATTAATCTC  700

seq1  AGAAAAAATTCCTTGGGAGATTCCTAGGGAGAGGGATAGGGAGTAGAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAATTCCTTGGGAGATTCCTAGGGAGAGGGATAGGGAGTAGAGCT  750

seq1  TTAATCCAAAGTGCATCATTTACC-TTGGATGAAGAAGAAATTAAGGCTC  799
      |||||||||||||||||||||||| |||||||||||||||||||| ||||
seq2  TTAATCCAAAGTGCATCATTTACCTTTGGATGAAGAAGAAATTAAAGCTC  800

seq1  TGGGAGGTGAATCAGTTCAGAAGTAAAAATCAAGCACTTTAGCCAAAGCA  849
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGGGAGGTGAATCAGTTCAGAAGTAAAAATCAAGCACTTTAG-CAAAGCA  849

seq1  AAGCTAAACAACACTGTATGAAGGCTTGAAATCCCCATTTCATTTCTTCT  899
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAAAC-ACACTGTATGAAGGCTTGAAATCCCCATTTCATTTCTTCT  898

seq1  TCTTTTTTTTCTTTTTTCTTTTTTGTCTTGGAGAATAGTATAATTATTGG  949
      |||||||||   |||||| |||||||||||||| ||||||||||||||||
seq2  TCTTTTTTT--CTTTTTCCTTTTTGTCTTGGAG-ATAGTATAATTATTGG  945

seq1  CTATTAATTTAAACCTTAAATTCAGGTATAATTACCAACTTCATTCTCAC  999
      ||||| ||||||||||| |||||| |||||  ||||||||||| ||||||
seq2  CTATT-ATTTAAACCTT-AATTCA-GTATA--TACCAACTTCA-TCTCAC  989

seq1  AATGTCTTTAAACCCACTTAC-TCTTCAAGTCCTGCGAATTTCTCCCCCT  1048
       |||||||  ||||||||||| ||||| ||| |||||| |||||  ||||
seq2  -ATGTCTT--AACCCACTTACTTCTTC-AGT-CTGCGATTTTCT--CCCT  1032

seq1  TACAAACATTCCTTTCTGTATTATTTTAAAA  1079
      ||| |||||||||||||||||||||| ||| 
seq2  TAC-AACATTCCTTTCTGTATTATTTAAAA-  1061