BAC Information

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BAC

Clone NameB6Ng01-093F12
Chromosome7 (Build37)
Map Location 104,545,793 - 104,657,307
singlet/doubletdoublet
Overlap geneNdufc2, Thrsp, Kctd14, Ints4
Upstream geneOdz4, LOC666858, Nars2, Gab2, LOC100040457, Usp35, EG622320, Alg8
Downstream gene1810020D17Rik, Rsf1, LOC622994, LOC100040211, Clns1a, Aqp11, LOC100040594, Pak1, Gdpd4, Myo7a, Capn5, Omp, B3gnt6, Phca, Tsku, LOC100040269, Gucy2d, LOC100040721, EG434215
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093F12.bB6Ng01-093F12.g
ACCDH904859DH904860
length1,1861,015
definitionDH904859|Mus musculus domesticus DNA, BAC clone: B6Ng01-093F12, 5' end.DH904860|Mus musculus domesticus DNA, BAC clone: B6Ng01-093F12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,656,096 - 104,657,307)(104,545,793 - 104,546,820)
sequence
gaattcaagactgacctagtctatatagcaagttctaggccagccaggga
tatacagctagactccattagacagactggcaggcaggcaggcagacaga
cagacagacagacagacagatggataatatgacacaacactttccccaaa
ggccaaaggaagatagaagaaagactttctggtcacaaacacttgaattt
aaatcttactatctaagtacctaaattagtttttgtttgtttgttttttt
ggttttatgagacagggtttctctgtgtagccttggctgtcctggaactc
actctgtagaccaggctggcctcgaactcagagatccgcctgcctctgcc
tcctgagtgctgggattaaaggcgagcgccaccacgcccagcttctaaat
tagtattattaatatgtctctttattactaagtgcttactataaaaagat
caagtatcatgccaagtactttatgtatacagaatctcatttaattttta
cagctaagaaaaatgtttattattatcatcccgactttatagaaatgctg
aaatgtgaatttaaccactgtattatactctttggaccttagcctctcct
tcatagtaggtactttacatggctattgcaaggctaaatgaaaagatgca
ctttataaattgtattttcatgagtgatatcagtgtgagagagagagatc
caagggccagggcacacgagtggaggtaaaggacaatgctggagtcagcc
ctctcctcccaccttttatgtgggttctggagatctcaggactcagtgct
cagtctccagacctgcgcaggaagtacctttacctgctgagccacctggc
agggcaggtgatgcacacaaagcagagtatatggtatattacaaagcata
cttaccatacatctcatcttccaacccatgaacaaatgctccacacgctc
ctgactctatcagttcacgcccccgtgtctatttcttccttgggagcatc
tcttcccatttcctgccactgaaactccccgaactgttaagttcctggca
cgctctagtgcagtgcgtttcctctgtagagaagacagcaatactatttg
cagagaacagagagacaagtagcaaaactgctcttgagacactccgcgta
agcgaagatgcaaaccaacttaaagagacaggttcc
gaattccttctggagaatattttcagtggattttttaaaaatatataatt
ttaaaacaaacactgtggcaaaaagcaaaacaacaaaaagtcacagtgca
agctggatgtgtgcccacagacctgtgatcccagggggtgggagcatgag
gcaggaggtcatgagttcttagccagcctcagctacacagtgtgtttgag
gccagtttggcttcatttttattgtgtgtcttttgttcatctctgtgtgt
gtatggccacagaggccacagaaggcatatgagcttcaggaagtggagtt
acaggaggtataaaccaaccaaagtgggtgctggtcatctgggacaccag
aaaacactctttttttaatttttaagatttatttattattatacataagt
aaactgtatctgtcttcagatgcgccagaagagaatgtccgatctcatta
caagtggttgtgagccaccatgtggttgctgggatttgaactcaggacct
tcggaagagcagccagtgctctaacctgctgagccatctcaccagcccca
gaaaacactcttaactaaccactgagccatctctccaaccctcaagactt
ttttttttttatgcagaaagggttttcccatgctatatttttattgttgt
tgttcaatttgctttgttttgttgagatgagggcagaacacagggcctag
tgcacaaggcaaacactctatcactatgccacatccctgaccctcgtttg
tttttttttttttttgttttattttatgggaatggggtctcactctgtag
gcaaagctgatctcaatgtttggaactcctgttttcttagcccctaagtg
ttgggattacaagtgtgagccacacaccctgcagtgttatactgtctata
ggacagaagatagattataattgctgggccctagttgtgagcatcaaata
tttggtgcacttcatgaaatctatgtatgctttctcaaatattttacttg
aaatgtttacttaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_104656096_104657307
seq2: B6Ng01-093F12.b_46_1231 (reverse)

seq1  GGAACCTTTGTCTCATTTTAAGTTGGGTTTGCATCTCTCTGCCCTCAACG  50
      ||||||  ||||||  |||||||| ||||||||    ||| | ||  |||
seq2  GGAACC--TGTCTC--TTTAAGTT-GGTTTGCA----TCTTCGCT-TACG  40

seq1  TCGAGTTGTCTTCAAGAGCAGTTTGTTGCTTACTTG-CTCTCTGTTCTCT  99
        ||| |||| ||||||||||||  |||| |||||| |||||||||||| 
seq2  CGGAG-TGTC-TCAAGAGCAGTT--TTGC-TACTTGTCTCTCTGTTCTC-  84

seq1  TGCAAATAGTAATTGCTGTCATCTTCTACAGAGGAAACGCACTGCACATG  149
      |||||||||| ||||||||| || |||||||||||||||||||||||  |
seq2  TGCAAATAGT-ATTGCTGTCTTC-TCTACAGAGGAAACGCACTGCACTAG  132

seq1  AGCGTGCCAAGGAACTTTACAGTTCGGGGGAGTTTTCCAGTGGCAGGAAA  199
      |||||||| |||||||| ||||||| |||||||||  |||||||||||||
seq2  AGCGTGCC-AGGAACTTAACAGTTC-GGGGAGTTT--CAGTGGCAGGAAA  178

seq1  TGGGGAGATGATGCTCCCAAGGAAGAAATAGACACGGGGGCCGTGAACCT  249
      |||| ||| ||||||||||||||||||||||||||||||| |||||| ||
seq2  TGGGAAGA-GATGCTCCCAAGGAAGAAATAGACACGGGGG-CGTGAA-CT  225

seq1  GATAGAGTCAGGAGCGTGTGGAGCCTTTGTTCATGGGTTGGAAGATGAGA  299
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GATAGAGTCAGGAGCGTGTGGAGCATTTGTTCATGGGTTGGAAGATGAGA  275

seq1  TGTATGGTAAGTATGCTTTGTAATATACCATATACTCTGCTTTGTGTGCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGGTAAGTATGCTTTGTAATATACCATATACTCTGCTTTGTGTGCA  325

seq1  TCACCTGCCCCTGCCAGGTGGCTCAGCAGGTAAAGGTACTTCCTGCGCAG  399
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTG-CCCTGCCAGGTGGCTCAGCAGGTAAAGGTACTTCCTGCGCAG  374

seq1  GTCTGGAGACCTGAGCACTGAGTCCTGAGATCTCCAGAACCCACATAAAA  449
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGAGA-CTGAGCACTGAGTCCTGAGATCTCCAGAACCCACATAAAA  423

seq1  GGTGGGAGGAGAGGGCTGACTCCAGCATTGTCCTTTACCTCCACTCGTGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGAGGAGAGGGCTGACTCCAGCATTGTCCTTTACCTCCACTCGTGT  473

seq1  GCCCTGGCCCTTGGATCTCTCTCTCTCACACTGATATCACTCATGAAAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGGCCCTTGGATCTCTCTCTCTCACACTGATATCACTCATGAAAAT  523

seq1  ACAATTTATAAAGTGCATCTTTTCATTTAGCCTTGCAATAGCCATGTAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTATAAAGTGCATCTTTTCATTTAGCCTTGCAATAGCCATGTAAA  573

seq1  GTACCTACTATGAAGGAGAGGCTAAGGTCCAAAGAGTATAATACAGTGGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTACTATGAAGGAGAGGCTAAGGTCCAAAGAGTATAATACAGTGGT  623

seq1  TAAATTCACATTTCAGCATTTCTATAAAGTCGGGATGATAATAATAAACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTCACATTTCAGCATTTCTATAAAGTCGGGATGATAATAATAAACA  673

seq1  TTTTTCTTAGCTGTAAAAATTAAATGAGATTCTGTATACATAAAGTACTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTAGCTGTAAAAATTAAATGAGATTCTGTATACATAAAGTACTT  723

seq1  GGCATGATACTTGATCTTTTTATAGTAAGCACTTAGTAATAAAGAGACAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGATACTTGATCTTTTTATAGTAAGCACTTAGTAATAAAGAGACAT  773

seq1  ATTAATAATACTAATTTAGAAGCTGGGCGTGGTGGCGCTCGCCTTTAATC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATAATACTAATTTAGAAGCTGGGCGTGGTGGCGCTCGCCTTTAATC  823

seq1  CCAGCACTCAGGAGGCAGAGGCAGGCGGATCTCTGAGTTCGAGGCCAGCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACTCAGGAGGCAGAGGCAGGCGGATCTCTGAGTTCGAGGCCAGCC  873

seq1  TGGTCTACAGAGTGAGTTCCAGGACAGCCAAGGCTACACAGAGAAACCCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTACAGAGTGAGTTCCAGGACAGCCAAGGCTACACAGAGAAACCCT  923

seq1  GTCTCATAAAACCAAAAAAACAAACAAACAAAAACTAATTTAGGTACTTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCATAAAACCAAAAAAACAAACAAACAAAAACTAATTTAGGTACTTA  973

seq1  GATAGTAAGATTTAAATTCAAGTGTTTGTGACCAGAAAGTCTTTCTTCTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTAAGATTTAAATTCAAGTGTTTGTGACCAGAAAGTCTTTCTTCTA  1023

seq1  TCTTCCTTTGGCCTTTGGGGAAAGTGTTGTGTCATATTATCCATCTGTCT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTTTGGCCTTTGGGGAAAGTGTTGTGTCATATTATCCATCTGTCT  1073

seq1  GTCTGTCTGTCTGTCTGTCTGCCTGCCTGCCTGCCAGTCTGTCTAATGGA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTCTGTCTGTCTGTCTGCCTGCCTGCCTGCCAGTCTGTCTAATGGA  1123

seq1  GTCTAGCTGTATATCCCTGGCTGGCCTAGAACTTGCTATATAGACTAGGT  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGCTGTATATCCCTGGCTGGCCTAGAACTTGCTATATAGACTAGGT  1173

seq1  CAGTCTTGAATTC  1212
      |||||||||||||
seq2  CAGTCTTGAATTC  1186

seq1: chr7_104545793_104546820
seq2: B6Ng01-093F12.g_68_1081

seq1  GAATTCCTTCTGGAGAATATTTTCAGTGGATTTTTTAAAAATATATAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCTGGAGAATATTTTCAGTGGATTTTTTAAAAATATATAATT  50

seq1  TTAAAACAAACACTGTGGCAAAAAGCAAAACAACAAAAAGTCACAGTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACAAACACTGTGGCAAAAAGCAAAACAACAAAAAGTCACAGTGCA  100

seq1  AGCTGGATGTGTGCCCACAGACCTGTGATCCCAGGGGGTGGGAGCATGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGATGTGTGCCCACAGACCTGTGATCCCAGGGGGTGGGAGCATGAG  150

seq1  GCAGGAGGTCATGAGTTCTTAGCCAGCCTCAGCTACACAGTGTGTTTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAGGTCATGAGTTCTTAGCCAGCCTCAGCTACACAGTGTGTTTGAG  200

seq1  GCCAGTTTGGCTTCATTTTTATTGTGTGTCTTTTGTTCATCTCTGTGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTTTGGCTTCATTTTTATTGTGTGTCTTTTGTTCATCTCTGTGTGT  250

seq1  GTATGGCCACAGAGGCCACAGAAGGCATATGAGCTTCAGGAAGTGGAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGCCACAGAGGCCACAGAAGGCATATGAGCTTCAGGAAGTGGAGTT  300

seq1  ACAGGAGGTATAAACCAACCAAAGTGGGTGCTGGTCATCTGGGACACCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAGGTATAAACCAACCAAAGTGGGTGCTGGTCATCTGGGACACCAG  350

seq1  AAAACACTCTTTTTTTAATTTTTAAGATTTATTTATTATTATACATAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACTCTTTTTTTAATTTTTAAGATTTATTTATTATTATACATAAGT  400

seq1  AAACTGTATCTGTCTTCAGATGCGCCAGAAGAGAATGTCCGATCTCATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTATCTGTCTTCAGATGCGCCAGAAGAGAATGTCCGATCTCATTA  450

seq1  CAAGTGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCT  500

seq1  TCGGAAGAGCAGCCAGTGCTCTAACCTGCTGAGCCATCTCACCAGCCCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGAAGAGCAGCCAGTGCTCTAACCTGCTGAGCCATCTCACCAGCCCCA  550

seq1  GAAAACACTCTTAACTAACCACTGAGCCATCTCTCCAACCCTCAAGACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACACTCTTAACTAACCACTGAGCCATCTCTCCAACCCTCAAGACTT  600

seq1  TTTTTTTTTTATGCAGAAAGGGTTTTCCCATGCTATATTTTTATTGTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTATGCAGAAAGGGTTTTCCCATGCTATATTTTTATTGTTGT  650

seq1  TGTTCAATTTGCTTTGTTTTGTTGAGATGAGGGCAGAACACAGGGCCTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAATTTGCTTTGTTTTGTTGAGATGAGGGCAGAACACAGGGCCTAG  700

seq1  TGCACAAGGCAAACACTCTATCACTATGCCACATCCCTGACCCTCGTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAAGGCAAACACTCTATCACTATGCCACATCCCTGACCCTCGTTTG  750

seq1  -TTTTTTTTTTTTTTGTTTTATTTTATTGGAAATGGGGTCTCACTCTGTA  799
       ||||||||||||||||||||||||| ||| |||||||||||||||||||
seq2  TTTTTTTTTTTTTTTGTTTTATTTTA-TGGGAATGGGGTCTCACTCTGTA  799

seq1  GGCAAAGCTGATCTCAATGTTTGGAACTCCTGTTTTCTTAGCCCCTAAGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAGCTGATCTCAATGTTTGGAACTCCTGTTTTCTTAGCCCCTAAGT  849

seq1  GTTGGGATTACAAGTGTGAGCCAACACACCCTGCAGTGTTATACTGTTCT  899
      |||||||||||||||||||||| ||||||||||||||||||||||| |||
seq2  GTTGGGATTACAAGTGTGAGCC-ACACACCCTGCAGTGTTATACTG-TCT  897

seq1  ATAGGACAGAAGATAAGATGTATAATTGCTGGGCCCTAAGTTGTGAGCAT  949
      |||||||||||||| |||| ||||||||||||||||| ||||||||||| 
seq2  ATAGGACAGAAGAT-AGAT-TATAATTGCTGGGCCCT-AGTTGTGAGCA-  943

seq1  TCAAATTATTTGGTGCACTTCATGAAAATCCTAATGTATGCTTTCTCAAA  999
      ||||| |||||||||||||||||| |||||   |||||||||||||||||
seq2  TCAAA-TATTTGGTGCACTTCATG-AAATC--TATGTATGCTTTCTCAAA  989

seq1  TAATTTTTACTTGAAAATGTTTTACTTAA  1028
      ||  ||||||||| ||||| |||||||||
seq2  TA--TTTTACTTG-AAATG-TTTACTTAA  1014