BAC Information

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BAC

Clone NameB6Ng01-093H20
Chromosome7 (Build37)
Map Location 147,073,451 - 147,192,362
singlet/doubletdoublet
Overlap geneLOC244229, Kndc1, Utf1, LOC100039095, 6430531B16Rik, Adam8, Tubgcp2
Upstream genePpp2r2d, Bnip3, EG668784, LOC669185, 6330417G02Rik, Dpysl4, Stk32c, LOC100038956, Lrrc27, Pwwp2, Inpp5a, Nkx6-2, E030019B06Rik, 9330101J02Rik, LOC100043472, EG434253, EG664869, Gpr123
Downstream geneZfp511, Msx3, Drd1ip, Prap1, 1810014F10Rik, Echs1, Paox, Mtg1, Sprn, Olfr522, Olfr523, Olfr524, E430002D04Rik, 5830411N06Rik, EG622335, Olfr525, Olfr527, GA_x5J8B7W72BC-152913-152037, Olfr60, GA_x5J8B7W72BC-125691-125311, Olfr530, LOC622973, Olfr531, Olfr532, Olfr533, Olfr534-ps1, Olfr535, Olfr536, Olfr537-ps1, Olfr1523-ps1, Olfr538, Olfr1553-ps1, Olfr46, Olfr61, Olfr53, Olfr539, GA_x5J8B7W3EKE-4574231-4574913, Olfr45, Olfr541, GA_x5J8B7W3EKE-4522784-4521912, Cyp2e1, Syce1, LOC100043529, BC066028, 1190003J15Rik, Scgb1c1, Odf3, Bet1l, Ric8, Sirt3, Psmd13, LOC100043546, Cox8b, Nlrp6, Athl1, Ifitm5, Ifitm2, Ifitm1, LOC665143
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093H20.bB6Ng01-093H20.g
ACCDH904966DH904967
length1,1291,068
definitionDH904966|Mus musculus domesticus DNA, BAC clone: B6Ng01-093H20, 5' end.DH904967|Mus musculus domesticus DNA, BAC clone: B6Ng01-093H20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,191,224 - 147,192,362)(147,073,451 - 147,074,497)
sequence
gaattcagtttccttctggccacaggtcaatggttcttggaactctgtgg
gaggggtctgattctgttgctgacaggcccatgtagctggaacaagtcgt
tgtgtgtctctcctgtggccataatggaagagtagggaggaagctactca
gctgggtctcaaatgagacacctgctcccaagtaaggctcagttgctcag
ctcacagttgagtggttgtgcaggacggtcctggaagtatgtggccacac
cagagttgtctgggcttgtgctgtagtggcctgaaactctgtgtgactta
cagtgagttcatggtggaggaacacgagctgcggaaggagaagatccagg
aggactacaacgacaagtactgggaccagcgctacactgtgctgccgcag
cagatcccatccttcctgcagaaggtagcaggcaagatcctcagcacagg
tgactgctgcctggacctctccaaggaggccatcacagccttccagcccc
tctgtccctgaagatgacttagcgggagtggcctactaccctgagctgct
agccactggttcctagttctccatcacttcattctggcccctaatcagga
agctgtctgcctcggacatggctttatatcttgggtttctacatctaaaa
ctccgtcatttagcaacaaaagccatgaggaacccacaccttctaggcca
gctgcatcttttagttccattgcataggttaggggctgatgtagagatta
ggcaaatcctcggggccttgacatattgctctgctctgaaacctgaacag
aatcagaaagggctgggggattatttagcaatctagatctcaaggctttg
caaaatccttcctataacagacctaaagaactattgcacagtctttttta
ggaagcaaattatgcgtcatgtctgggcctactacctcatgtttgggttg
gcatcataaggttcagcctgagactcagcatgtacatactaaacccacct
ttcctttttttcagaaaatactaaatgtggtcagaggagtgtgtcatgat
gtcactgtcccgtagccaagaatcatcaataccttaagagcgggccatat
gtgagcaatagagaagcgtcattatgcca
gaattcctgataaggagacttggtgaacgtagtctctttccagaggtcgg
ggtcaggtaggtaggtcttgaaggtgccatcaaaggtggccttggcaaag
ttgcccagggtggcagtgcagcctctgactgaagtgtagcagtcatctat
actggccatcatcagtatcttgggcacaggatcagagacaatgccagtgc
ctctggggacaaggataagacacaccagcacagagccacagtggcctgtc
accttgcatggaacagtgtgcagcttgctgatcttgttcctccagtagcc
tctctgcacagggatggtggaaagcttggccaagatgatggcccctccga
tgacagtggctacctccttggagcacttaacaccaagaccaacgtgacca
ttgtagtccccagtagtgacgaaagccttgaacctggcccgctggccagc
ctgagtctgcttctgcactggcatgattttcagaacctcatcctttaggg
atgcacccaggaaaagtcaatgatctcagactccttaatgggcagggaga
acaggtagatctcccccaaggacttgatcttcatgtccttaaccaggcgg
cccagcttggtgacagggatccactccttgtcttcagctttacctccacg
agccccgctgcctggatcacagccacagccctgatcactaacatagcctc
taaggaccactgccaaaagctccgtggagccactatggggccccttaatc
ctggggcccccggggtcctcccagccctcccactgcactggcgtcatcgg
gtcattgggtattttcctgaaaaaaaataaaaagaagtattttatgattt
ttttaaattggattcgtaggggctggaaagatagcttaagaattaaaagg
acactgtgcttgttcttccagaggaacttgggtttcaattcctagaaatc
acatagccgcctctcaattgtctctaattccagttctaggaaatctgaaa
accttcttctggcctctgttagcttccaggcatacattggtggtgcaaga
agaacacattcaggcaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_147191224_147192362
seq2: B6Ng01-093H20.b_43_1171 (reverse)

seq1  TGGCATAATTGAACGCTTTCTCTATCTGCTCCACATAT-GCCCGCTCTTT  49
      |||||||||   |||| |||||||| |||| ||||||| |||||||||| 
seq2  TGGCATAAT--GACGC-TTCTCTAT-TGCT-CACATATGGCCCGCTCTT-  44

seq1  AAGGGTATAGATGATTTCTTTGGCTACGGGACAGGTGACATCATGACCAC  99
       | ||||| |||||||   |||||||||||||| |||||||||||| |||
seq2  -AAGGTATTGATGATT--CTTGGCTACGGGACA-GTGACATCATGA-CAC  89

seq1  ACT-CTCTGACCACATTTAGGTATTTTCCTGAAAAAAAGG-AAGGTGGGT  147
      ||| ||||||||||||||| ||||||| |||||||||||| |||||||||
seq2  ACTCCTCTGACCACATTTA-GTATTTT-CTGAAAAAAAGGAAAGGTGGGT  137

seq1  TTAGTATGTACATGCTGAGTCTCAGGCCTGAACCTTTATGATGCCAA-CC  196
      |||||||||||||||||||||||||| ||||||| |||||||||||| ||
seq2  TTAGTATGTACATGCTGAGTCTCAGG-CTGAACC-TTATGATGCCAACCC  185

seq1  AAACATGAGGTAGTAGG-CCAGACATGACGCATAATTTGCTTCCTAAAAA  245
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AAACATGAGGTAGTAGGCCCAGACATGACGCATAATTTGCTTCCTAAAAA  235

seq1  AGACTGTGCAATAGTTCTTTAGGTCTGTTATAGGAAGGATTTTGCAAAGC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGTGCAATAGTTCTTTAGGTCTGTTATAGGAAGGATTTTGCAAAGC  285

seq1  CTTGAGATCTAGATTGCTAAATAATCCCCCAGCCCTTTCTGATTCTGTTC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGATCTAGATTGCTAAATAATCCCCCAGCCCTTTCTGATTCTGTTC  335

seq1  AGGTTTCAGAGCAGAGCAATATGTCAAGGCCCCGAGGATTTGCCTAATCT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTCAGAGCAGAGCAATATGTCAAGGCCCCGAGGATTTGCCTAATCT  385

seq1  CTACATCAGCCCCTAACCTATGCAATGGAACTAAAAGATGCAGCTGGCCT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATCAGCCCCTAACCTATGCAATGGAACTAAAAGATGCAGCTGGCCT  435

seq1  AGAAGGTGTGGGTTCCTCATGGCTTTTGTTGCTAAATGACGGAGTTTTAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGTGTGGGTTCCTCATGGCTTTTGTTGCTAAATGACGGAGTTTTAG  485

seq1  ATGTAGAAACCCAAGATATAAAGCCATGTCCGAGGCAGACAGCTTCCTGA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGAAACCCAAGATATAAAGCCATGTCCGAGGCAGACAGCTTCCTGA  535

seq1  TTAGGGGCCAGAATGAAGTGATGGAGAACTAGGAACCAGTGGCTAGCAGC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGGCCAGAATGAAGTGATGGAGAACTAGGAACCAGTGGCTAGCAGC  585

seq1  TCAGGGTAGTAGGCCACTCCCGCTAAGTCATCTTCAGGGACAGAGGGGCT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGTAGTAGGCCACTCCCGCTAAGTCATCTTCAGGGACAGAGGGGCT  635

seq1  GGAAGGCTGTGATGGCCTCCTTGGAGAGGTCCAGGCAGCAGTCACCTGTG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGCTGTGATGGCCTCCTTGGAGAGGTCCAGGCAGCAGTCACCTGTG  685

seq1  CTGAGGATCTTGCCTGCTACCTTCTGCAGGAAGGATGGGATCTGCTGCGG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGATCTTGCCTGCTACCTTCTGCAGGAAGGATGGGATCTGCTGCGG  735

seq1  CAGCACAGTGTAGCGCTGGTCCCAGTACTTGTCGTTGTAGTCCTCCTGGA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACAGTGTAGCGCTGGTCCCAGTACTTGTCGTTGTAGTCCTCCTGGA  785

seq1  TCTTCTCCTTCCGCAGCTCGTGTTCCTCCACCATGAACTCACTGTAAGTC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCCTTCCGCAGCTCGTGTTCCTCCACCATGAACTCACTGTAAGTC  835

seq1  ACACAGAGTTTCAGGCCACTACAGCACAAGCCCAGACAACTCTGGTGTGG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAGTTTCAGGCCACTACAGCACAAGCCCAGACAACTCTGGTGTGG  885

seq1  CCACATACTTCCAGGACCGTCCTGCACAACCACTCAACTGTGAGCTGAGC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATACTTCCAGGACCGTCCTGCACAACCACTCAACTGTGAGCTGAGC  935

seq1  AACTGAGCCTTACTTGGGAGCAGGTGTCTCATTTGAGACCCAGCTGAGTA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGCCTTACTTGGGAGCAGGTGTCTCATTTGAGACCCAGCTGAGTA  985

seq1  GCTTCCTCCCTACTCTTCCATTATGGCCACAGGAGAGACACACAACGACT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTCCCTACTCTTCCATTATGGCCACAGGAGAGACACACAACGACT  1035

seq1  TGTTCCAGCTACATGGGCCTGTCAGCAACAGAATCAGACCCCTCCCACAG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCAGCTACATGGGCCTGTCAGCAACAGAATCAGACCCCTCCCACAG  1085

seq1  AGTTCCAAGAACCATTGACCTGTGGCCAGAAGGAAACTGAATTC  1139
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCAAGAACCATTGACCTGTGGCCAGAAGGAAACTGAATTC  1129

seq1: chr7_147073451_147074497
seq2: B6Ng01-093H20.g_68_1135

seq1  GAATTCCTGATAAGGAGACTTGGTGAACGTAGTCTCTTTCCAGAGGTCGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGATAAGGAGACTTGGTGAACGTAGTCTCTTTCCAGAGGTCGG  50

seq1  GGTCAGGTAGGTAGGTCTTGAAGGTGCCATCAAAGGTGGCCTTGGCAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGGTAGGTAGGTCTTGAAGGTGCCATCAAAGGTGGCCTTGGCAAAG  100

seq1  TTGCCCAGGGTGGCAGTGCAGCCTCTGACTGAAGTGTAGCAGTCATCTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCAGGGTGGCAGTGCAGCCTCTGACTGAAGTGTAGCAGTCATCTAT  150

seq1  ACTGGCCATCATCAGTATCTTGGGCACAGGATCAGAGACAATGCCAGTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCCATCATCAGTATCTTGGGCACAGGATCAGAGACAATGCCAGTGC  200

seq1  CTCTGGGGACAAGGATAAGACACACCAGCACAGAGCCACAGTGGCCTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGGGACAAGGATAAGACACACCAGCACAGAGCCACAGTGGCCTGTC  250

seq1  ACCTTGCATGGAACAGTGTGCAGCTTGCTGATCTTGTTCCTCCAGTAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGCATGGAACAGTGTGCAGCTTGCTGATCTTGTTCCTCCAGTAGCC  300

seq1  TCTCTGCACAGGGATGGTGGAAAGCTTGGCCAAGATGATGGCCCCTCCGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCACAGGGATGGTGGAAAGCTTGGCCAAGATGATGGCCCCTCCGA  350

seq1  TGACAGTGGCTACCTCCTTGGAGCACTTAACACCAAGACCAACGTGACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGTGGCTACCTCCTTGGAGCACTTAACACCAAGACCAACGTGACCA  400

seq1  TTGTAGTCCCCAGTAGTGACGAAAGCCTTGAACCTGGCCCGCTGGCCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGTCCCCAGTAGTGACGAAAGCCTTGAACCTGGCCCGCTGGCCAGC  450

seq1  CTGAGTCTGCTTCTGCACTGGCATGATTTTCAGAACCTCATCCTTTAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTCTGCTTCTGCACTGGCATGATTTTCAGAACCTCATCCTTTAGGG  500

seq1  ATGCACCCAGGAAAAGTCAATGATCTCAGACTCCTTAATGGGCAGGGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACCCAGGAAAAGTCAATGATCTCAGACTCCTTAATGGGCAGGGAGA  550

seq1  ACAGGTAGATCTCCCCCAAGGACTTGATCTTCATGTCCTTAACCAGGCGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTAGATCTCCCCCAAGGACTTGATCTTCATGTCCTTAACCAGGCGG  600

seq1  CCCAGCTTGGTGACAGGGATCCACTCCTTGTCTTCAGCTTTACCTCCACG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCTTGGTGACAGGGATCCACTCCTTGTCTTCAGCTTTACCTCCACG  650

seq1  AGCCCCGCTGCCTGGATCACAGCCACAGCCCTGATCACTAACATAGCCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCGCTGCCTGGATCACAGCCACAGCCCTGATCACTAACATAGCCTC  700

seq1  TAA-GACCACTGCCAAAAGCTCCGTGGAAGCCACTATGGG--CCCCTAAT  747
      ||| ||||||||||||||||||||||| ||||||||||||  ||| ||||
seq2  TAAGGACCACTGCCAAAAGCTCCGTGG-AGCCACTATGGGGCCCCTTAAT  749

seq1  CCTGGG--CCCCCGGGTCCTCCCAGCCCTCCCACTGCACTGGCGTCATC-  794
      ||||||  |||| |||||||||||||||||||||||||||||||||||| 
seq2  CCTGGGGCCCCCGGGGTCCTCCCAGCCCTCCCACTGCACTGGCGTCATCG  799

seq1  GGTCATTTGGTATTTTCCTGAAAAAAA--TAAAAGAAGTA-TTTATGA-T  840
      ||||||| |||||||||||||||||||   |||||||||| ||||||| |
seq2  GGTCATTGGGTATTTTCCTGAAAAAAAATAAAAAGAAGTATTTTATGATT  849

seq1  TTTTTAAAATGGATTCGTAGGGGCTGGAGAGATAGCTTAGGAATT-AAAG  889
      |||||||| ||||||||||||||||||| |||||||||| ||||| ||||
seq2  TTTTTAAATTGGATTCGTAGGGGCTGGAAAGATAGCTTAAGAATTAAAAG  899

seq1  GACACTG-GC-TGTTCTTCCAGAGGACCT--GGGTTCAATTCCCAGAAAT  935
      ||||||| || ||||||||||||||| ||  || ||||||||| ||||||
seq2  GACACTGTGCTTGTTCTTCCAGAGGAACTTGGGTTTCAATTCCTAGAAAT  949

seq1  CACATAGCCG-CTCTCAATTGTCTCTAATTCCAGTTCTAGGAAATCTGAA  984
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CACATAGCCGCCTCTCAATTGTCTCTAATTCCAGTTCTAGGAAATCTGAA  999

seq1  A--CCTCTTCTGGCCTCTGTAAGC-TCCAGGCATACAT--GTGGTGC-AG  1028
      |  | ||||||||||||||| ||| |||||||||||||  ||||||| ||
seq2  AACCTTCTTCTGGCCTCTGTTAGCTTCCAGGCATACATTGGTGGTGCAAG  1049

seq1  AGAGACACATTCAGGCAAA  1047
      |   |||||||||||||||
seq2  AAGAACACATTCAGGCAAA  1068