BAC Information

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BAC

Clone NameB6Ng01-093I14
Chromosome7 (Build37)
Map Location 24,550,095 - 24,737,078
singlet/doubletdoublet
Overlap geneLOC384573, EG622222, LOC546943, V1rd12, V1rd13, V1rd17, LOC100043121
Upstream geneLOC100043650, LOC100043067, LOC100043069, LOC670857, LOC620758, EG667570, LOC100043658, LOC100043079, LOC100043083, EG667586, EG667599, LOC100043086, LOC100043665, LOC667616, LOC100043667, LOC667623, LOC100043088, EG628664, Nlrp4e, LOC434261, Nlrp5, LOC100043095, EG622032, LOC667651, LOC100043101, LOC100043103, EG546944, V1rd7, V1rd9, EG545934, V1rd22
Downstream geneV1rd16, LOC384575, V1rd20, V1rd18, V1rd15, EG622446, Zfp180, Zfp112, Zfp235, Zfp114, Zfp111, Zfp109, Zfp108, Zfp93, LOC100043690, Zfp61, LOC100043691, Zfp94, 1700008P20Rik, Lypd5, Kcnn4, 1500002O20Rik, Irgc1, Plaur, Cadm4, Zfp428, Irgq, 2310033E01Rik, Xrcc1, Zfp575, Ethe1, LOC100043138, EG232970, Lypd3, LOC100043706, Tex101, Gm1096, BC049730, EG210155, Cd177, Ceacam10, EG545936, LOC100043712, Lypd4, Dmrtc2, Rps19, Cd79a, Arhgef1, EG232974
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093I14.bB6Ng01-093I14.g
ACCDH904998DH904999
length9971,044
definitionDH904998|Mus musculus domesticus DNA, BAC clone: B6Ng01-093I14, 5' end.DH904999|Mus musculus domesticus DNA, BAC clone: B6Ng01-093I14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,550,095 - 24,551,091)(24,736,021 - 24,737,078)
sequence
gaattcagaagacaacaatatgagataaaatatataatttgtgttctcaa
gttttagaccatctgagttctattttcagttttaaagaaactccttctat
gtatttccctggattctgattgtgctgtcaaaggaaaatcctacttggct
agggaaagcactgcctttgacctcataaacaatgtatacatagtcattga
tgcttggagacttgattcacatggcctctgacttgggaaaatggagatgt
agtgatgtggtagaagattatcttgtctataatgtcacaggaactggtta
gaattcccacatgtcacaacagaagtgatgacatactgaaatgtgtcatg
gatatttgacctactgaatcaggcagattccctgtgagtttggcaggact
tggagaaaataattggaattattgcactgatccttgtcttcagactttat
cagttacagtccatgtatgtcttagcaagtgtatgatgatggcatgactg
ttgccaagtgattgatactgtcatctataatttgaacataccaggcaata
tgtagctaccaatgcaataatggcaagactatcaaagaggatgacctagc
actcttttgaatacattaaacatttgatccacaggaaagagattatggtt
agtactttaaacactgtcaaaatccattgttgaaaaacataaggctgaga
gtataatgttttgatgttgatttagaaaattttagtagtgttgaagtgcc
ttctaaatattgttttcatagatctgtgctactttacatttttcagagaa
tcttgtattacaacacgtggtgggttaatgcagagatctgtaagtgctca
attcttgagtaagttactgtgaatgttaaccttaaatgggacatttacac
caaaccctcaacccaaggcttgagatacattaatgaagagaaagttcttc
atgactttctaagcctgttttcttttgctacccagaccacaagccca
gaattcaatacagttgggagggagggaagactgcaaaggcatgtatctta
atcaataaaatcacgtaatcagtaacaagttagagattccatcattagat
tttgtcatcagaattcaatatagttaggagggagaagatgcttcaaatgg
aatacatattaatcaataaaataacttaataaaaagaaaagaacaataca
ccataaaataattaatacaccttcctcatgttatagtaacatgttaagaa
caatgaatatgttaataagacatattattatatataataatcaataaggt
ttgtagcttaattcagatgtagaaaattaagttgttggcttttgaggaat
ttttatactactcatccacacaataaaataccaaatattttaatatatcc
acttatgttttgatcaggcaggtgaatataggttaacatatacatgtccc
atatgaaaaaacccacttgctaacaagattcatttattcatattttctca
atcttaagttttcttttacaaagtcaggttccagagtctttgctgcatca
tctctaccttccctcaaaaattattaacacaatcactattattccatttg
caagccactgcttagtctgccttttacttatttatatgtttcttttcttt
attagatattttcttcacttacatttcaaatgctatcttgaaagtctcct
ataccttctccctgccctgctccccaacccactcactcctgctttctggc
cccagaattcccctgtactgggatatataatctttgcaagaccaagggcc
tctcctcccattgatggacaactaggccatcctctgctacatatgcaact
agagacatggttctgggggtacctattgtatggaacacagggccctaatg
aagagctagagaagtaccaaggagctaaagggtctgcaaccctataggga
ttcaacattattatattgtttctaaagaacatgggacttcatctacatat
aaattcaaaatgccaaatccgatgtgatttgacgcgttttctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_24550095_24551091
seq2: B6Ng01-093I14.b_49_1045

seq1  GAATTCAGAAGACAACAATATGAGATAAAATATATAATTTGTGTTCTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAGACAACAATATGAGATAAAATATATAATTTGTGTTCTCAA  50

seq1  GTTTTAGACCATCTGAGTTCTATTTTCAGTTTTAAAGAAACTCCTTCTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAGACCATCTGAGTTCTATTTTCAGTTTTAAAGAAACTCCTTCTAT  100

seq1  GTATTTCCCTGGATTCTGATTGTGCTGTCAAAGGAAAATCCTACTTGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTCCCTGGATTCTGATTGTGCTGTCAAAGGAAAATCCTACTTGGCT  150

seq1  AGGGAAAGCACTGCCTTTGACCTCATAAACAATGTATACATAGTCATTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAGCACTGCCTTTGACCTCATAAACAATGTATACATAGTCATTGA  200

seq1  TGCTTGGAGACTTGATTCACATGGCCTCTGACTTGGGAAAATGGAGATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGGAGACTTGATTCACATGGCCTCTGACTTGGGAAAATGGAGATGT  250

seq1  AGTGATGTGGTAGAAGATTATCTTGTCTATAATGTCACAGGAACTGGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATGTGGTAGAAGATTATCTTGTCTATAATGTCACAGGAACTGGTTA  300

seq1  GAATTCCCACATGTCACAACAGAAGTGATGACATACTGAAATGTGTCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCACATGTCACAACAGAAGTGATGACATACTGAAATGTGTCATG  350

seq1  GATATTTGACCTACTGAATCAGGCAGATTCCCTGTGAGTTTGGCAGGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTGACCTACTGAATCAGGCAGATTCCCTGTGAGTTTGGCAGGACT  400

seq1  TGGAGAAAATAATTGGAATTATTGCACTGATCCTTGTCTTCAGACTTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAAAATAATTGGAATTATTGCACTGATCCTTGTCTTCAGACTTTAT  450

seq1  CAGTTACAGTCCATGTATGTCTTAGCAAGTGTATGATGATGGCATGACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTACAGTCCATGTATGTCTTAGCAAGTGTATGATGATGGCATGACTG  500

seq1  TTGCCAAGTGATTGATACTGTCATCTATAATTTGAACATACCAGGCAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAAGTGATTGATACTGTCATCTATAATTTGAACATACCAGGCAATA  550

seq1  TGTAGCTACCAATGCAATAATGGCAAGACTATCAAAGAGGATGACCTAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCTACCAATGCAATAATGGCAAGACTATCAAAGAGGATGACCTAGC  600

seq1  ACTCTTTTGAATACATTAAACATTTGATCCACAGGAAAGAGATTATGGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTTTGAATACATTAAACATTTGATCCACAGGAAAGAGATTATGGTT  650

seq1  AGTACTTTAAACACTGTCAAAATCCATTGTTGAAAAACATAAGGCTGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTTTAAACACTGTCAAAATCCATTGTTGAAAAACATAAGGCTGAGA  700

seq1  GTATAATGTTTTGATGTTGATTTAGAAAATTTTAGTAGTGTTGAAGTGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAATGTTTTGATGTTGATTTAGAAAATTTTAGTAGTGTTGAAGTGCC  750

seq1  TTCTAAATATTGTTTTCATAGATCTGTGCTACTTTACATTTTTCAGAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAATATTGTTTTCATAGATCTGTGCTACTTTACATTTTTCAGAGAA  800

seq1  TCTTGTATTACAACACGTGGT-GGTTAATGCAGAGATCTGTAAGTGCTCA  849
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TCTTGTATTACAACACGTGGTGGGTTAATGCAGAGATCTGTAAGTGCTCA  850

seq1  AATCTTGAGTAAGTTACTGTGAATGTTAACCTTTAAATGGGACATTTACA  899
      | ||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATTCTTGAGTAAGTTACTGTGAATGTTAACC-TTAAATGGGACATTTACA  899

seq1  CCAAACCCTCAACCCAAGGCTTGAGATACATTAATGAAGAGAAAGTTCTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACCCTCAACCCAAGGCTTGAGATACATTAATGAAGAGAAAGTTCTT  949

seq1  CATGACTTTCTAAGCCTGTTTTCTTGTGCTACCCAGACCACAAGCCCA  997
      ||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CATGACTTTCTAAGCCTGTTTTCTTTTGCTACCCAGACCACAAGCCCA  997

seq1: chr7_24736021_24737078
seq2: B6Ng01-093I14.g_68_1111 (reverse)

seq1  GCAGAAAACAGCGTTCAACATCACATCTGTATTTGGCATTTTGAATTTTA  50
      ||||||||| ||| |||| |||||||| | ||||||||||||||| ||||
seq2  GCAGAAAAC-GCG-TCAA-ATCACATC-GGATTTGGCATTTTGAA-TTTA  45

seq1  TATGGTAGATGGAAGTCCCATGTTCTTTAGAAACATATA-AATATTGTTG  99
      ||| |||||| |||||||||||||||||||||||| ||| |||| |||||
seq2  TAT-GTAGAT-GAAGTCCCATGTTCTTTAGAAACA-ATATAATAATGTTG  92

seq1  ATTCCCCTATAGGGTTGCAGACCCCTTTAGCTCCTTGGTTACTTTCTCTA  149
      | | ||||||||||||||||| |||||||||||||||| ||| |||||||
seq2  AAT-CCCTATAGGGTTGCAGA-CCCTTTAGCTCCTTGG-TAC-TTCTCTA  138

seq1  GCTCCTTCATTAGGGGCCCTGTGTTCCATACAATAGGTACCCCCCAGAAC  199
      ||| |||||||| |||||||||||||||||||||||||| ||||||||||
seq2  GCT-CTTCATTA-GGGCCCTGTGTTCCATACAATAGGTA-CCCCCAGAAC  185

seq1  CATGTCTCTAGTTGCATATGTAGCAGAGGATGGCCTAGTTGTCCATCAAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCTCTAGTTGCATATGTAGCAGAGGATGGCCTAGTTGTCCATCAAT  235

seq1  GGGAGGAGAGGCCCTTGGTCTTGCAAAGATTATATATCCCAGTACAGGGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGAGAGGCCCTTGGTCTTGCAAAGATTATATATCCCAGTACAGGGG  285

seq1  AATTCTGGGGCCAGAAAGCAGGAGTGAGTGGGTTGGGGAGCAGGGCAGGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGGGGCCAGAAAGCAGGAGTGAGTGGGTTGGGGAGCAGGGCAGGG  335

seq1  AGAAGGTATAGGAGACTTTCAAGATAGCATTTGAAATGTAAGTGAAGAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGTATAGGAGACTTTCAAGATAGCATTTGAAATGTAAGTGAAGAAA  385

seq1  ATATCTAATAAAGAAAAGAAACATATAAATAAGTAAAAGGCAGACTAAGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTAATAAAGAAAAGAAACATATAAATAAGTAAAAGGCAGACTAAGC  435

seq1  AGTGGCTTGCAAATGGAATAATAGTGATTGTGTTAATAATTTTTGAGGGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCTTGCAAATGGAATAATAGTGATTGTGTTAATAATTTTTGAGGGA  485

seq1  AGGTAGAGATGATGCAGCAAAGACTCTGGAACCTGACTTTGTAAAAGAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGAGATGATGCAGCAAAGACTCTGGAACCTGACTTTGTAAAAGAAA  535

seq1  ACTTAAGATTGAGAAAATATGAATAAATGAATCTTGTTAGCAAGTGGGTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAGATTGAGAAAATATGAATAAATGAATCTTGTTAGCAAGTGGGTT  585

seq1  TTTTCATATGGGACATGTATATGTTAACCTATATTCACCTGCCTGATCAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATATGGGACATGTATATGTTAACCTATATTCACCTGCCTGATCAA  635

seq1  AACATAAGTGGATATATTAAAATATTTGGTATTTTATTGTGTGGATGAGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAAGTGGATATATTAAAATATTTGGTATTTTATTGTGTGGATGAGT  685

seq1  AGTATAAAAATTCCTCAAAAGCCAACAACTTAATTTTCTACATCTGAATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAAAAATTCCTCAAAAGCCAACAACTTAATTTTCTACATCTGAATT  735

seq1  AAGCTACAAACCTTATTGATTATTATATATAATAATATGTCTTATTAACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTACAAACCTTATTGATTATTATATATAATAATATGTCTTATTAACA  785

seq1  TATTCATTGTTCTTAACATGTTACTATAACATGAGGAAGGTGTATTAATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATTGTTCTTAACATGTTACTATAACATGAGGAAGGTGTATTAATT  835

seq1  ATTTTATGGTGTATTGTTCTTTTCTTTTTATTAAGTTATTTTATTGATTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATGGTGTATTGTTCTTTTCTTTTTATTAAGTTATTTTATTGATTA  885

seq1  ATATGTATTCCATTTGAAGCATCTTCTCCCTCCTAACTATATTGAATTCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTATTCCATTTGAAGCATCTTCTCCCTCCTAACTATATTGAATTCT  935

seq1  GATGACAAAATCTAATGATGGAATCTCTAACTTGTTACTGATTACGTGAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACAAAATCTAATGATGGAATCTCTAACTTGTTACTGATTACGTGAT  985

seq1  TTTATTGATTAAGATACATGCCTTTGCAGTCTTCCCTCCCTCCCAACTGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGATTAAGATACATGCCTTTGCAGTCTTCCCTCCCTCCCAACTGT  1035

seq1  ATTGAATTC  1058
      |||||||||
seq2  ATTGAATTC  1044