BAC Information

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BAC

Clone NameB6Ng01-093M11
Chromosome7 (Build37)
Map Location 48,296,391 - 48,477,296
singlet/doubletdoublet
Overlap geneEG233164, LOC668555, EG627987, LOC100039269, LOC545955, EG628304
Upstream geneEG628161, LOC100039094, 2900093B09Rik, 4930433I11Rik
Downstream geneLOC668561, EG434172, LOC100039221, LOC668565, AI987944, EG269902, LOC100039375, EG628359, 2610021A01Rik, 2810426N06Rik, LOC668576, Gprc2a-rs5, LOC628372, EG668579, EG628403, EG628422, Gprc2a-rs1, EG628444, EG434174, EG637913, EG434175, LOC100039556, EG637898
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093M11.bB6Ng01-093M11.g
ACCDH905168DH905169
length1,001895
definitionDH905168|Mus musculus domesticus DNA, BAC clone: B6Ng01-093M11, 5' end.DH905169|Mus musculus domesticus DNA, BAC clone: B6Ng01-093M11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,296,391 - 48,297,394)(48,476,746 - 48,477,296)
sequence
gaattcaatatgaccctcattgaccaggacactacactctcctccctggc
tgtgacaaaccagtgtgataaaattttagatcccaatgccatagttcctt
ttcatccaacactgtctgccagctttgtccaagtcacaccaccgcagatg
ccaaatcaaggatacagcctggcaccttcctaccaggaaggcagccagtt
ctattactatgaacacaacaacctgggccctctgatagccggagaatatg
ggcagtgtttgcagccccatggttctgtgtcctaccatggaaatcagacc
tcttcactccaaccagagatggtgatggtgctaaaggagattcagccaag
gaatatccaaataccattttttacctctgccttctcctattccacatctg
ctcaatccatgccagagaacagtcttcctggtgagtaaagatccaggagg
gaagtattgggatcatcactccaaagaaattgacctctaccttttagtag
tggacagtacacacagagggagaatgagtctcctgacaggttaagtgagt
aacatccatcctttattaaatgatatccatggagcacaccatagtcacac
atgtaactaactacacagaataatcagtactatccaccaatacactgcaa
tagactacttcctaacctattattgatcttgtgtgtagaagacactgagg
aattgttttggcaacatgggattttccatgagttgaaatcctccagagca
atgtaggttcagaatctgtcctggaggaagaattcctcccagagtctcag
cacctgttctggagttttcttacacttaacattgtagagagagccgggcg
tggtggcgcacgcctttgatcccagcactggggaggcagaggcaggcgga
tttctgagttcgaggccagcctggtatacaaagggagctccaggacagcc
agagctatgcagagaaccctgtatcgaaaaccaaaaaaaccaacaacaaa
c
gaattctacagagcatggagttctacagaggccagagatggagaagtgat
gccagcctttggaagtgtccaaaagatcaagtggaatcccagacactgaa
acaagaagttgtaacattgaaattgccttggagactcaaagacgttaaag
atgctagagccatggcatgctgaggaaagcttctaacagaaagtggaact
agcccaggagaaagcagtttgttgcagtcaacaaagatgaaaatgaatgg
ggagcactttggcatcggccatggggatatagagtttggaatttgcccag
ttggtttcctgccttgctttggggattacagttaattagttggatgaatc
tcagaagagaccttaaactttggatttttaacattgttgagactgctata
gactatgaggactttaaaagtttgactaaatgcatttttcattttgctat
gtttaagtatgtcccccatagactcatgtgcttgaacaagtctattgggg
ccagggagtggaatgtgatggtttgtatattctttggccagggagtggca
atatttggaggtgtgaccaagttggagtaggtgtgcctctgtgggtgtgg
gcttaagatcctcaccctagttgactatgagttaatcttccactatcagc
ctttggatgaagacatagaactctcagctactcctaccccatgcctgcct
ggatgctgccatgatcccacattgatgatagaggactgaacctcttaacc
tgtaagccggtcccaattaaatgttgttttcataagacttggattggtca
ggtgtcagttcaaggcagtaaaacccagactaatacagggggtaagatga
gggccgggctgctggagcagaggtggtggtggtggctggggggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_48296391_48297394
seq2: B6Ng01-093M11.b_45_1045

seq1  GAATTCAATATGACCCTCATTGACCAGGACACTACACTCTCCTCCCTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATATGACCCTCATTGACCAGGACACTACACTCTCCTCCCTGGC  50

seq1  TGTGACAAACCAGTGTGATAAAATTTTAGATCCCAATGCCATAGTTCCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACAAACCAGTGTGATAAAATTTTAGATCCCAATGCCATAGTTCCTT  100

seq1  TTCATCCAACACTGTCTGCCAGCTTTGTCCAAGTCACACCACCGCAGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCCAACACTGTCTGCCAGCTTTGTCCAAGTCACACCACCGCAGATG  150

seq1  CCAAATCAAGGATACAGCCTGGCACCTTCCTACCAGGAAGGCAGCCAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATCAAGGATACAGCCTGGCACCTTCCTACCAGGAAGGCAGCCAGTT  200

seq1  CTATTACTATGAACACAACAACCTGGGCCCTCTGATAGCCGGAGAATATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTACTATGAACACAACAACCTGGGCCCTCTGATAGCCGGAGAATATG  250

seq1  GGCAGTGTTTGCAGCCCCATGGTTCTGTGTCCTACCATGGAAATCAGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTGTTTGCAGCCCCATGGTTCTGTGTCCTACCATGGAAATCAGACC  300

seq1  TCTTCACTCCAACCAGAGATGGTGATGGTGCTAAAGGAGATTCAGCCAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCACTCCAACCAGAGATGGTGATGGTGCTAAAGGAGATTCAGCCAAG  350

seq1  GAATATCCAAATACCATTTTTTACCTCTGCCTTCTCCTATTCCACATCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATCCAAATACCATTTTTTACCTCTGCCTTCTCCTATTCCACATCTG  400

seq1  CTCAATCCATGCCAGAGAACAGTCTTCCTGGTGAGTAAAGATCCAGGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATCCATGCCAGAGAACAGTCTTCCTGGTGAGTAAAGATCCAGGAGG  450

seq1  GAAGTATTGGGATCATCACTCCAAAGAAATTGACCTCTACCTTTTAGTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTATTGGGATCATCACTCCAAAGAAATTGACCTCTACCTTTTAGTAG  500

seq1  TGGACAGTACACACAGAGGGAGAATGAGTCTCCTGACAGGTTAAGTGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAGTACACACAGAGGGAGAATGAGTCTCCTGACAGGTTAAGTGAGT  550

seq1  AACATCCATCCTTTATTAAATGATATCCATGGAGCACACCATAGTCACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCCATCCTTTATTAAATGATATCCATGGAGCACACCATAGTCACAC  600

seq1  ATGTAACTAACTACACAGAATAATCAGTACTATCCACCAATACACTGCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAACTAACTACACAGAATAATCAGTACTATCCACCAATACACTGCAA  650

seq1  TAGACTACTTCCTAACCTATTATTGATCTTGTGTGTAGAAGACACTGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTACTTCCTAACCTATTATTGATCTTGTGTGTAGAAGACACTGAGG  700

seq1  AATTGTTTTGGCAACATGGGATTTTCCATGAGTTGAAATCCTCCAGAGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTTTTGGCAACATGGGATTTTCCATGAGTTGAAATCCTCCAGAGCA  750

seq1  ATGTAGGTTCAGAATCTGTCCTGGAGGAAGAATTCCTCCCAGAGTCTCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGGTTCAGAATCTGTCCTGGAGGAAGAATTCCTCCCAGAGTCTCAG  800

seq1  CACCTGTTCTGGAGTTTTCTTACACTTAACATTGTAGAGAGAGCCGGGCG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGTTCTGGAGTTTTCTTACACTTAACATTGTAGAGAGAGCCGGGCG  850

seq1  TGGTGGCGCACGCCTTTGATCCCAGCACTGGGGAGGCAGAGGCAGGCGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGCGCACGCCTTTGATCCCAGCACTGGGGAGGCAGAGGCAGGCGGA  900

seq1  TTTCTGAGTTCGAGGCCAGCCTGGTATACAAAGGGAGCTCCAGGACAGCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAGTTCGAGGCCAGCCTGGTATACAAAGGGAGCTCCAGGACAGCC  950

seq1  AGAGCTATGCAGAGAAACCCTGTATCGAAAAACCAAAAAAACAAACAAAC  1000
      |||||||||||||| |||||||||||| |||||||||||||| ||| |||
seq2  AGAGCTATGCAGAG-AACCCTGTATCG-AAAACCAAAAAAACCAAC-AAC  997

seq1  AAAC  1004
      ||||
seq2  AAAC  1001

seq1: chr7_48476746_48477296
seq2: B6Ng01-093M11.g_416_964 (reverse)

seq1  CACCCCCCAGCCACCACCACCACCTCTGCCTCCAGCAGCCCGGCCCTCAT  50
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CACCCCCCAGCCACCACCACCACCTCTG-CTCCAGCAGCCCGGCCCTCAT  49

seq1  CCTACCCCCTGTATTAGTCTGGGTTTTACTGCCTTGAACTGACACCCTGA  100
      | |||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTTACCCCCTGTATTAGTCTGGGTTTTACTGCCTTGAACTGACA-CCTGA  98

seq1  CCAATCCAAGTCTTATGAAAACAACATTTAATTGGGACCGGCTTACAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCCAAGTCTTATGAAAACAACATTTAATTGGGACCGGCTTACAGGT  148

seq1  TAAGAGGTTCAGTCCTCTATCATCAATGTGGGATCATGGCAGCATCCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGGTTCAGTCCTCTATCATCAATGTGGGATCATGGCAGCATCCAGG  198

seq1  CAGGCATGGGGTAGGAGTAGCTGAGAGTTCTATGTCTTCATCCAAAGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCATGGGGTAGGAGTAGCTGAGAGTTCTATGTCTTCATCCAAAGGCT  248

seq1  GATAGTGGAAGATTAACTCATAGTCAACTAGGGTGAGGATCTTAAGCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTGGAAGATTAACTCATAGTCAACTAGGGTGAGGATCTTAAGCCCA  298

seq1  CACCCACAGAGGCACACCTACTCCAACTTGGTCACACCTCCAAATATTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACAGAGGCACACCTACTCCAACTTGGTCACACCTCCAAATATTGC  348

seq1  CACTCCCTGGCCAAAGAATATACAAACCATCACATTCCACTCCCTGGCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCCTGGCCAAAGAATATACAAACCATCACATTCCACTCCCTGGCCC  398

seq1  CAATAGACTTGTTCAAGCACATGAGTCTATGGGGGACATACTTAAACATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGACTTGTTCAAGCACATGAGTCTATGGGGGACATACTTAAACATA  448

seq1  GCAAAATGAAAAATGCATTTAGTCAAACTTTTAAAGTCCTCATAGTCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAATGAAAAATGCATTTAGTCAAACTTTTAAAGTCCTCATAGTCTAT  498

seq1  AGCAGTCTCAACAATGTTAAAAATCCAAAGTTTAAGGTCTCTTCTGAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTCTCAACAATGTTAAAAATCCAAAGTTTAAGGTCTCTTCTGAGAT  548

seq1  T  551
      |
seq2  T  549