BAC Information

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BAC

Clone NameB6Ng01-096E16
Chromosome7 (Build37)
Map Location 16,013,526 - 16,014,382
singlet/doubletsinglet
Overlap genenone
Upstream gene2810007J24Rik, EG638251, B430211C08Rik, EG194588, LOC666352, EG666312, LOC666365, LOC671978, LOC100042677, LOC100042685, EG666381, LOC100042691, LOC100042702, LOC100042707, LOC100042711, LOC100042714, LOC100042717, LOC100042721, LOC100042728, LOC100042731, LOC100042735, LOC100042739, LOC100042742, LOC235841, EG666407, LOC666337, Obox2
Downstream geneLOC100042753, LOC100042756, LOC100042758, EG545921, LOC100042762, Obox1, LOC100042765, Obox3, LOC100042771, Obox5, EG638338, Obox6, Crx, Crxos1, Sepw1, Gltscr2, Ehd2, Gltscr1, Zfp541, Napa, Kptn, Slc8a2, Mrg2, Dhx34, Gpr77, C5ar1, 2610014I16Rik, Ccdc9, Bbc3, Sae1, BC057627
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096E16.bB6Ng01-096E16.g
ACCDH906991DH906992
length1,1101,246
definitionDH906991|Mus musculus domesticus DNA, BAC clone: B6Ng01-096E16, 5' end.DH906992|Mus musculus domesticus DNA, BAC clone: B6Ng01-096E16, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaccatggtgatctaaagttttactacagagtaattgtgttaaaa
actgcatggtactggtatagggacagacaagtagaccaatggaacagaat
tgaagacccagaaatgaaaccacacacctatggtcacttgatctttgaca
agggagcaaaaaacatccagtggaaaaaagacagcattttcaacaaatgg
tgctggcacacctggcggttatcatatagaagaatgtgaattgatccatt
tctatctccttgtactaaggtcaaatctaagtggattaaagaattccaca
taaaaccagacatagtgaaacatatggaggagaaagtagggaaaagcctc
gaagatattggtacagggggaaaaaaatcctgaatagatcagcaatggtt
tgtgctgttaagatcgagaatcgacaaatgagaccgcatgaaattgcaaa
gcttctgcaaggcaaaagacacagtcaataagacaaaaaaggccaccaac
agattgagaaaggatctttacctatcctaaatcagagaggggactgatat
ccaatatatataaagaaatcaagaaggtgaactaccgaaaatcaaataat
cccattaaaagattgggctcagagctaaaaaagaaatctcacctgaagaa
tacccaatggctgagaagctcctgaaaaaatgttcaacatccttaatcat
caggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcag
aatggataagagcgtgctcttgtagtatgatgggtatacatgtgaataag
agcgtggggaggagaaagattatgattacataaatatttcatctctctag
atgcatatttgtaattttgaggttgttttattctgtgtagctctatttgt
cctgtaaagttgtatatagaaaaaggcggtttagaagtcacgagatgacc
tgcctctgactctgagtactttgaattaaagtataccgccagcaagctga
tgcaatgtattgtagaagtttttccctaaatagccaggaatttgtttttt
aggagaactagagctttatagactggaggacaactttcttgcatgacgac
ctgacttaca
gaattcctgatctttccaagacttttatcctgaatgggtgttggattttt
caaatgctttctctgcatttatggctaagataaaaaattcaggggacagc
agatgctggggaggatgtggagaaagaggaactctcctccattgttggtg
ggcttacatgcttgtacaaacactctagaaatcagtctggcggttcctca
gaaaattggacacagtactactggaggatcctgcaatacctctcctgggc
atatatccagaagatgttccagccagtaagaaacacacatgctccactat
gttcatagcagccttatttttaatagccagaagctggaaagaacccagat
gtccctcaacaggggaatgtatacagaaaatgtggtacatttacagaatg
gagtactactcagatactaaagaccatgaattgaagaaattcttaggcaa
atggatggatctggaggatatcatcctgagtgagacaatgcaatcacaaa
agaacacatatggtatacactcattgataaggggatactagcccaggaat
tgagaatacccacgatacaacttgcaaaacatatgaaactcaagaagaag
gaagaccaaagtgtggatacttagctccttcttataattttaaacaaaat
acccatggattgattcacagtgacaaagttcagagcagatcttgaaggaa
tgaccatccagagactgccctactgggggatacacgccataaaccactac
caaacccagacactaggcagatgccaccaagaacctgctgacaggagcct
atatagctgtttccagtgaggctgtgccagtgcctggcaaatacagaagt
ggatgctcacagttatccactggactgagcacaagttccccaattaagga
gccaaagaaatacccaaggagctgaaggggactgagtccccatagaagaa
acaacaatatgaactaattagtactctcagagctccttggaccttgtctt
catcaggtttctatctgtcacagacatcatgaccagaaactagtgggtag
gacagggtttattcggctaacactttcataactgctgtttatcaccaaag
gaagtcaggcctggacctcaaacagggcaagaaggcagggactgatgcaa
gaggcatggaagggatgttcttactggctgctctcccttggctgtctcag
aaccagaactgacgacgcccacagaatgatggttacatctcatact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_16013526_16014382
seq2: B6Ng01-096E16.b_306_1154

seq1  GTACTAAGGTCAAATCTAAGTGGATTAAAGAATTCCACATAAAACCAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTAAGGTCAAATCTAAGTGGATTAAAGAATTCCACATAAAACCAGAC  50

seq1  ATAGTGAAACATATGGAGGAGAAAGTAGGGAAAAGCCTCGAAGATATTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGAAACATATGGAGGAGAAAGTAGGGAAAAGCCTCGAAGATATTGG  100

seq1  TACAGGGGGAAAAAAATCCTGAATAGATCAGCAATGGTTTGTGCTGTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGGGGAAAAAAATCCTGAATAGATCAGCAATGGTTTGTGCTGTTAA  150

seq1  GATCGAGAATCGACAAATGAGACCGCATGAAATTGCAAAGCTTCTGCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCGAGAATCGACAAATGAGACCGCATGAAATTGCAAAGCTTCTGCAAG  200

seq1  GCAAAAGACACAGTCAATAAGACAAAAAAGGCCACCAACAGATTGAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAGACACAGTCAATAAGACAAAAAAGGCCACCAACAGATTGAGAAA  250

seq1  GGATCTTTACCTATCCTAAATCAGAGAGGGGACTGATATCCAATATATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTTTACCTATCCTAAATCAGAGAGGGGACTGATATCCAATATATAT  300

seq1  AAAGAAATCAAGAAGGTGAACTACCGAAAATCAAATAATCCCATTAAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAATCAAGAAGGTGAACTACCGAAAATCAAATAATCCCATTAAAAG  350

seq1  ATTGGGCTCAGAGCTAAAAAAGAAATCTCACCTGAAGAATACCCAATGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGCTCAGAGCTAAAAAAGAAATCTCACCTGAAGAATACCCAATGGC  400

seq1  TGAGAAGCTCCTGAAAAAATGTTCAACATCCTTAATCATCAGGAAATGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGCTCCTGAAAAAATGTTCAACATCCTTAATCATCAGGAAATGCA  450

seq1  AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGATAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGATAAGA  500

seq1  GCGTGCTCTTGTAGTATGATGGGTATACATGTGAATAAGAGCGTGGGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGCTCTTGTAGTATGATGGGTATACATGTGAATAAGAGCGTGGGGAG  550

seq1  GAGAAAGATTATGATTACATAAATA-TTCATCTCTCTAGATGCATATTTG  599
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GAGAAAGATTATGATTACATAAATATTTCATCTCTCTAGATGCATATTTG  600

seq1  TAATTTTGAGGTTGTTTTATTCTGTGTAGCTCTATTTGTCCTGTAAAGTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TAATTTTGAGGTTGTTTTATTCTGTGTAGCTCTATTTGTCCTGTAAAGTT  650

seq1  GTATATAGAAAAAGGCGGTTTAGAAGTCACGGAGATGACCTGCCTCTGAC  699
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GTATATAGAAAAAGGCGGTTTAGAAGTCAC-GAGATGACCTGCCTCTGAC  699

seq1  TCCTGAGTACTTTGAATTAAGGTATACCGCCAGCAAGGCTGATGCAATGT  749
      | |||||||||||||||||| ||||||||||||||| |||||||||||||
seq2  T-CTGAGTACTTTGAATTAAAGTATACCGCCAGCAA-GCTGATGCAATGT  747

seq1  ATTGTAGAAAGTTTTTCCCTAAATAGCCAGGAATTTGTTTTTTAAGGAGA  799
      ||||||| ||||||||||||||||||||||||||||||||||| ||||||
seq2  ATTGTAG-AAGTTTTTCCCTAAATAGCCAGGAATTTGTTTTTT-AGGAGA  795

seq1  ACTAGACACCTTATAGACTGTGAAGACAAC-TTCCTGCAGTGACAGACCC  848
      ||||||  | |||||||||| || |||||| ||| |||| |||| || ||
seq2  ACTAGA-GCTTTATAGACTG-GAGGACAACTTTCTTGCA-TGAC-GA-CC  840

seq1  TGACTTACA  857
      |||||||||
seq2  TGACTTACA  849