BAC Information

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BAC

Clone NameB6Ng01-096K09
Chromosome7 (Build37)
Map Location 140,144,547 - 140,274,348
singlet/doubletdoublet
Overlap geneZranb1, Ctbp2
Upstream geneGpr26, Cpxm2, 4631426J05Rik, LOC100043682, LOC100043683, Oat, Nkx1-2, 2310007H09Rik, A930008G19Rik, 2010208K18Rik, C430003P19Rik
Downstream geneLOC668747, 4930404H21Rik, LOC100043237, 2700050L05Rik, Mmp21, Uros, Bccip, Dhx32, LOC100043695, Fank1, Adam12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096K09.bB6Ng01-096K09.g
ACCDH907239DH907240
length8851,204
definitionDH907239|Mus musculus domesticus DNA, BAC clone: B6Ng01-096K09, 5' end.DH907240|Mus musculus domesticus DNA, BAC clone: B6Ng01-096K09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(140,144,547 - 140,145,432)(140,273,111 - 140,274,348)
sequence
gaattcttttaggaatcaagggtttttggtatcttaagtcagacaatcct
aggataagaaatgctttaaatttttttcccctctgaaagtaccaggtaga
ccagtcagcatatttgtctttatggctgctagtatttcatgtctttatta
ctattcttccttctttatactaacttttattttattttgcatattcttaa
tttttttgaattcccattccgatttctgcatcttaacagctgtgagttca
tttttaaaggcatgaccagtcttgatcatttaccggttcctttgttcata
gggtgttattttggtccttgtttatggctcttgataaggtggattctatc
tttgctattagctgaataatgttattaatcataacaacaaaagtggacct
ttgtctattgggtagtcttatcctgatgtgtaaatatcattccactgtgt
taactttaaaaaaatgtgtgtttacattacattaattaaaaagacaaaag
cacctgagcagtaaggctgattaaaaagttgccatgcactccaccccttt
gcctgggttacacttcccagattttattagatgtgggggacattatgact
tattgatagtgtgcatcaaaaatcatctacatgctgggcatggtgacaca
accttcaattcaggccaaggcaggtgaatttttgtgatgagcttcgggcc
agctagaactacacagtgagaccttgtctccaaaaatatgtgtgtgtgtg
tgtgtgtgtgtgtgtgtgttaagcagggatattgaacataaaatagtatc
ctgatgtaatttgtgaaaatttctcgctcaaattggaaaatatttctcat
gattaggccagcttggaagctgactgaggaaggtt
gaattccatcttcatggaaaagccacagagaaagacacctggccattctt
ccaggccagatgttggctttttcctctcatccacaggactggcttcagta
ccctgcccctgctgctgctctgcctgcttgagcagcaagcaggtcaggtg
cctgcgatgctaccatgtatttccccctgctctacctgggtaaaatgaat
gtgagtgctgtttaatgcaatacctagcttcatattgcatttgccaagaa
aagtgcgattttattgaacgttaggattgaattcttaactgggtaatcaa
tttcagtagtgagttaaaatgccttctattaatggacagcggcagccgtt
catcagagttccagtagattagcagttgtcagcatttatgctaatagcac
ttataaaccaggagcttatgaaatgcactttataattctgtatctcttag
aacacttgctaacactttttgcttggaggtattgattgtttggttccttg
gcgtgctatgtggccctgtaaaggaagccaagtgatattttcatgccgat
gacactaccacctttctggttctgcactcttggctttgtgtcagagtgga
tggaaagggtccatttgttctggtgctctactgtttaatttgatcagctc
tgcggctacagcaagacaaatagtatttttaatgaaaccatttaataacc
ctggtagctttgagttgaaggcattgggaaaatgcaattaaagaatggct
ggatgtaaacagatcagggctgtttcctcgctgactccatccattgcatt
tgcagggcttcatcactgtaaatggttgcaagccgacaaagctgcacctc
ctgaaaaagacggacagcccatcgcgtgagctgtagagtttgtggacgca
tttctatcggtgagtactgtaaaatatctccaggtaaaagttgttctaaa
tcccctttggaagtgtttcaattagcagatgactatggatcgctgcagcc
tctgatgcttcctcggatgccccatggcagagcatatgattgtcttcatt
attgcatctggatttcatatcaagccaaatacatgtattactctgaagca
aaccgtcaggtgccaggagattctggcgctgctgactgcggcttctgctg
gtctggatagtcagcgaattcttcagactgagtagtgtgctagacttttg
gacg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_140144547_140145432
seq2: B6Ng01-096K09.b_47_931

seq1  GAATTCTTTTAGGAATCAAGGGTTTTTGGTATCTTAAGTCAGACAATCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTAGGAATCAAGGGTTTTTGGTATCTTAAGTCAGACAATCCT  50

seq1  AGGATAAGAAATGCTTTAAATTTTTTTCCCCTCTGAAAGTACCAGGTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAAGAAATGCTTTAAATTTTTTTCCCCTCTGAAAGTACCAGGTAGA  100

seq1  CCAGTCAGCATATTTGTCTTTATGGCTGCTAGTATTTCATGTCTTTATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCAGCATATTTGTCTTTATGGCTGCTAGTATTTCATGTCTTTATTA  150

seq1  CTATTCTTCCTTCTTTATACTAACTTTTATTTTATTTTGCATATTCTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCTTCCTTCTTTATACTAACTTTTATTTTATTTTGCATATTCTTAA  200

seq1  TTTTTTTGAATTCCCATTCCGATTTCTGCATCTTAACAGCTGTGAGTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGAATTCCCATTCCGATTTCTGCATCTTAACAGCTGTGAGTTCA  250

seq1  TTTTTAAAGGCATGACCAGTCTTGATCATTTACCGGTTCCTTTGTTCATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAGGCATGACCAGTCTTGATCATTTACCGGTTCCTTTGTTCATA  300

seq1  GGGTGTTATTTTGGTCCTTGTTTATGGCTCTTGATAAGGTGGATTCTATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTTATTTTGGTCCTTGTTTATGGCTCTTGATAAGGTGGATTCTATC  350

seq1  TTTGCTATTAGCTGAATAATGTTATTAATCATAACAACAAAAGTGGACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTATTAGCTGAATAATGTTATTAATCATAACAACAAAAGTGGACCT  400

seq1  TTGTCTATTGGGTAGTCTTATCCTGATGTGTAAATATCATTCCACTGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTATTGGGTAGTCTTATCCTGATGTGTAAATATCATTCCACTGTGT  450

seq1  TAACTTTAAAAAAATGTGTGTTTACATTACATTAATTAAAAAGACAAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTAAAAAAATGTGTGTTTACATTACATTAATTAAAAAGACAAAAG  500

seq1  CACCTGAGCAGTAAGGCTGATTAAAAAGTTGCCATGCACTCCACCCCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGAGCAGTAAGGCTGATTAAAAAGTTGCCATGCACTCCACCCCTTT  550

seq1  GCCTGGGTTACACTTCCCAGATTTTATTAGATGTGGGGGACATTATGACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGGTTACACTTCCCAGATTTTATTAGATGTGGGGGACATTATGACT  600

seq1  TATTGATAGTGTGCATCAAAAATCATCTACATGCTGGGCATGGTGACACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGATAGTGTGCATCAAAAATCATCTACATGCTGGGCATGGTGACACA  650

seq1  ACCTTCAATTCAGGCCAAGGCAGGTGAATTTTTGTGATGAGCTTCGGGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCAATTCAGGCCAAGGCAGGTGAATTTTTGTGATGAGCTTCGGGCC  700

seq1  AGCTAGAACTACACAGTGAGACCTTGTCTCCAAAAATATGTGTGTGTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGAACTACACAGTGAGACCTTGTCTCCAAAAATATGTGTGTGTGTG  750

seq1  TGTGTGTGTGTGTGTGTGTTAAGCAGGGATATTGAACATAAAATAGTATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTTAAGCAGGGATATTGAACATAAAATAGTATC  800

seq1  CTGAATGTAAATTGTGAAATATTCTCGCTCCAAATTGGAAAATA-TTCTC  849
      ||| |||||| ||||||||  |||||||| |||||||||||||| |||||
seq2  CTG-ATGTAATTTGTGAAAATTTCTCGCT-CAAATTGGAAAATATTTCTC  848

seq1  ATGATTAGGCCAGCTTGGAAGCTGACTGAGGAAGGTT  886
      |||||||||||||||||||||||||||||||||||||
seq2  ATGATTAGGCCAGCTTGGAAGCTGACTGAGGAAGGTT  885

seq1: chr7_140273111_140274348
seq2: B6Ng01-096K09.g_67_1270 (reverse)

seq1  CGTCCAAAAGTCCTACCATCCTAGAGTTTCCTTGTAAGATAATTTCCGCT  50
      ||||||||||| ||| ||  |||     ||  | | | | ||||  ||||
seq2  CGTCCAAAAGT-CTAGCACACTA----CTCAGTCTGA-AGAATT--CGCT  42

seq1  GACTTATCTCCAGAGCAGCAGCAGCAGCAG-CAGCAGCAGCAGGGATCTC  99
      |||   | |||||| |||||| ||| |||| ||||||| ||  | |||||
seq2  GAC---TATCCAGACCAGCAGAAGCCGCAGTCAGCAGC-GCCAGAATCTC  88

seq1  TTGCCACTGGACTGTATTGCTTCAGAGTTAATTACATGTATTTTGCTTTT  149
       || |||  ||| || ||||||||||||  | ||||||||||| ||  ||
seq2  CTGGCACCTGACGGT-TTGCTTCAGAGT--AATACATGTATTTGGC--TT  133

seq1  GATAAATGAAAATACCAGATGCAATTAATTGAAAGACAATCAATATGCTC  199
      |||  ||||||   |||||||||| ||||   ||||||||| ||||||| 
seq2  GAT--ATGAAA--TCCAGATGCAA-TAAT--GAAGACAATC-ATATGCT-  174

seq1  CTGCCATGAGACATCCCGAGGAAGCATCCAGAGGCTGCCAGCGATCCATA  249
      |||||||| | ||| |||||||||||| ||||||||| ||||||||||||
seq2  CTGCCATGGGGCAT-CCGAGGAAGCAT-CAGAGGCTG-CAGCGATCCATA  221

seq1  GTCATCTGCTAATTGAAAACACCTTCCAAAGGGGATTTTAGAAAACAACT  299
      ||||||||||||||| ||||| ||||||||||||||||   | |||||||
seq2  GTCATCTGCTAATTG-AAACA-CTTCCAAAGGGGATTT---AGAACAACT  266

seq1  TTTACCTGGAGATATTTTACAGTAACTCACCGATAGAAATGCGTCCACAA  349
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTTACCTGGAGATATTTTACAGT-ACTCACCGATAGAAATGCGTCCACAA  315

seq1  ACTCTACAGCTCACGCGATGGGCTGTCCGTCTTTTTCAGGAGGTGCAGCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTACAGCTCACGCGATGGGCTGTCCGTCTTTTTCAGGAGGTGCAGCT  365

seq1  TTGTCGGCTTGCAACCATTTACAGTGATGAAGCCCTGCAAATGCAATGGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCGGCTTGCAACCATTTACAGTGATGAAGCCCTGCAAATGCAATGGA  415

seq1  TGGAGTCAGCGAGGAAACAGCCCTGATCTGTTTACATCCAGCCATTCTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTCAGCGAGGAAACAGCCCTGATCTGTTTACATCCAGCCATTCTTT  465

seq1  AATTGCATTTTCCCAATGCCTTCAACTCAAAGCTACCAGGGTTATTAAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCATTTTCCCAATGCCTTCAACTCAAAGCTACCAGGGTTATTAAAT  515

seq1  GGTTTCATTAAAAATACTATTTGTCTTGCTGTAGCCGCAGAGCTGATCAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCATTAAAAATACTATTTGTCTTGCTGTAGCCGCAGAGCTGATCAA  565

seq1  ATTAAACAGTAGAGCACCAGAACAAATGGACCCTTTCCATCCACTCTGAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAACAGTAGAGCACCAGAACAAATGGACCCTTTCCATCCACTCTGAC  615

seq1  ACAAAGCCAAGAGTGCAGAACCAGAAAGGTGGTAGTGTCATCGGCATGAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGCCAAGAGTGCAGAACCAGAAAGGTGGTAGTGTCATCGGCATGAA  665

seq1  AATATCACTTGGCTTCCTTTACAGGGCCACATAGCACGCCAAGGAACCAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCACTTGGCTTCCTTTACAGGGCCACATAGCACGCCAAGGAACCAA  715

seq1  ACAATCAATACCTCCAAGCAAAAAGTGTTAGCAAGTGTTCTAAGAGATAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCAATACCTCCAAGCAAAAAGTGTTAGCAAGTGTTCTAAGAGATAC  765

seq1  AGAATTATAAAGTGCATTTCATAAGCTCCTGGTTTATAAGTGCTATTAGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTATAAAGTGCATTTCATAAGCTCCTGGTTTATAAGTGCTATTAGC  815

seq1  ATAAATGCTGACAACTGCTAATCTACTGGAACTCTGATGAACGGCTGCCG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGCTGACAACTGCTAATCTACTGGAACTCTGATGAACGGCTGCCG  865

seq1  CTGTCCATTAATAGAAGGCATTTTAACTCACTACTGAAATTGATTACCCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCATTAATAGAAGGCATTTTAACTCACTACTGAAATTGATTACCCA  915

seq1  GTTAAGAATTCAATCCTAACGTTCAATAAAATCGCACTTTTCTTGGCAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGAATTCAATCCTAACGTTCAATAAAATCGCACTTTTCTTGGCAAA  965

seq1  TGCAATATGAAGCTAGGTATTGCATTAAACAGCACTCACATTCATTTTAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATATGAAGCTAGGTATTGCATTAAACAGCACTCACATTCATTTTAC  1015

seq1  CCAGGTAGAGCAGGGGGAAATACATGGTAGCATCGCAGGCACCTGACCTG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTAGAGCAGGGGGAAATACATGGTAGCATCGCAGGCACCTGACCTG  1065

seq1  CTTGCTGCTCAAGCAGGCAGAGCAGCAGCAGGGGCAGGGTACTGAAGCCA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTGCTCAAGCAGGCAGAGCAGCAGCAGGGGCAGGGTACTGAAGCCA  1115

seq1  GTCCTGTGGATGAGAGGAAAAAGCCAACATCTGGCCTGGAAGAATGGCCA  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGTGGATGAGAGGAAAAAGCCAACATCTGGCCTGGAAGAATGGCCA  1165

seq1  GGTGTCTTTCTCTGTGGCTTTTCCATGAAGATGGAATTC  1238
      |||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCTTTCTCTGTGGCTTTTCCATGAAGATGGAATTC  1204