BAC Information

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BAC

Clone NameB6Ng01-097I20
Chromosome7 (Build37)
Map Location 78,789,436 - 78,944,923
singlet/doubletdoublet
Overlap geneLOC665535
Upstream genenone
Downstream geneMctp2, LOC100042873, LOC100042880, LOC233391, LOC665570
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097I20.bB6Ng01-097I20.g
ACCDH907899DH907900
length1,0891,113
definitionDH907899|Mus musculus domesticus DNA, BAC clone: B6Ng01-097I20, 5' end.DH907900|Mus musculus domesticus DNA, BAC clone: B6Ng01-097I20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,789,436 - 78,790,519)(78,943,799 - 78,944,923)
sequence
gaattcctagtaactggcaagaaaggagtcattgtctcagatactgtctg
accatgtcccagaagaaactagaaaattcatacctgctgctttagtccac
tcttatgcctcttccactctgaataatgcattgtcttgaattgagataag
aatatagaactatgtgcattgccatgaaaattaaataacttaaagtcttt
atgctccactataagattcaaaaacgtaaaaaatgtatgctccccattga
aggttaagtgagtgccacgttgttgatatgtactaatatgacatatacat
ataataaataataagcaggaagagtttaagcaagttgaaaggacggtgtt
ttctgtttaatataagatttcccctttgtagccttcatcgtgtcagaatt
atcttaaagataaaattgagttatctaaagaaccgggaagatggcccaat
cagttgacctgttacctctcaaaataaataaacaaataatattttgaatg
tggtgatgagctttctgagtaatcttgacataaatgcaatgtaaattctt
ttctttatattaaatctaatgatattttaatatatttcaaatatccaaag
acttccctagaagtcactttctttgctcctataaaagacagtattgaagt
cttaaaaatttagttgaagctatgagtagtcccagcttcccaagaggctg
aggcaagaatcttgaccagttcaaggtcagtcttagctataggggggagt
tccagacctccatggacagctttagtgattccctgtcccaaaatacacag
tgaaagcagcgaagacctcaaactccgtggcagtgtttgatccacaatta
aaaaaatatttgtagggtccctaatggaggagctagagaaagtacccaag
gacctgaaggggtctgcaaccctatagctggaacaatatgaactaaccca
ttacccccacagagctcgtgtctctgctgcatatgtatcagaagattgcc
ctagtcagccatcattgagaagagaggcctccttggtctttgcaaacttt
atttgccccagtacaggggaatgccaggtccaagaagta
gaattctagtgtgcttaaactttctgctgttcagataaaaaacagcagca
attttctgcttgaatttctctgtgactaaatccattgatcatcctttctc
tccgtgagtgagaagtgtgttttctccttaataactcctatccttctccc
tggatatccccccctcagcttgtttgtgttgtgttggtcagtcttatgcg
ctattcctctgagagatagagagagtgcagaattgaagttattttatgct
tggactccttcagtcccaattttcaaatcttcgtgtcaattttcacacat
cagtgtcatgtggtgaatgttatggaaatttcagtgaggtctttgggagg
caatttatacatgaatccctaccccctacccaccagcccactgcaattcc
tgtcttttctaagaataagtggatctataattaatgtggattttaaaata
tagcgccattcagaatcctcatagcaggttttgcatgccatgtcttctct
gcactgtaaacacaaaagcagaaatgcttgctagctctcttttctaatac
atgggcttctgtaaaaggaataaaaattacagtttgttggcggtaaagag
caactaattactcagaaagaggcatgtttttatttttcaaaactgcactg
aaaatggtttatcatgcaataaatttgctaatcaccagttaggaaacacg
gtgccatctccacctacctgctgcggcttcctttgaaagtgggtgtgtta
cagtttttcataggaaattatatccttttgaaaatgaacatgacagaaga
cgttcagtgaatagctaggaagtcctcagcagtcagaattcaaaccgtgt
gcaaaatagtgtgcttcgtggtgtcgaagatgctacccgctgatcttggc
ttggcttgatgaacagaggcacaagacccattcttatgaagatattattc
atctttttctaatccccttttgaccttaacatagcttttcaaatatagac
aaatttaggaagtcagcctcaattttaacccacctcaattccctttcctc
tgaaatcctgtaggttgattatgtaaaagagatgtattgttttagttgtt
atttcaggagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_78789436_78790519
seq2: B6Ng01-097I20.b_42_1130

seq1  GAATTCCTAGTAACTGGCAAGAAAGGAGTCATTGTCTCAGATACTGTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGTAACTGGCAAGAAAGGAGTCATTGTCTCAGATACTGTCTG  50

seq1  ACCATGTCCCAGAAGAAACTAGAAAATTCATACCTGCTGCTTTAGTCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTCCCAGAAGAAACTAGAAAATTCATACCTGCTGCTTTAGTCCAC  100

seq1  TCTTATGCCTCTTCCACTCTGAATAATGCATTGTCTTGAATTGAGATAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATGCCTCTTCCACTCTGAATAATGCATTGTCTTGAATTGAGATAAG  150

seq1  AATATAGAACTATGTGCATTGCCATGAAAATTAAATAACTTAAAGTCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAGAACTATGTGCATTGCCATGAAAATTAAATAACTTAAAGTCTTT  200

seq1  ATGCTCCACTATAAGATTCAAAAACGTAAAAAATGTATGCTCCCCATTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCCACTATAAGATTCAAAAACGTAAAAAATGTATGCTCCCCATTGA  250

seq1  AGGTTAAGTGAGTGCCACGTTGTTGATATGTACTAATATGACATATACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTAAGTGAGTGCCACGTTGTTGATATGTACTAATATGACATATACAT  300

seq1  ATAATAAATAATAAGCAGGAAGAGTTTAAGCAAGTTGAAAGGACGGTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAAATAATAAGCAGGAAGAGTTTAAGCAAGTTGAAAGGACGGTGTT  350

seq1  TTCTGTTTAATATAAGATTTCCCCTTTGTAGCCTTCATCGTGTCAGAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTTAATATAAGATTTCCCCTTTGTAGCCTTCATCGTGTCAGAATT  400

seq1  ATCTTAAAGATAAAATTGAGTTATCTAAAGAACCGGGAAGATGGCCCAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAAAGATAAAATTGAGTTATCTAAAGAACCGGGAAGATGGCCCAAT  450

seq1  CAGTTGACCTGTTACCTCTCAAAATAAATAAACAAATAATATTTTGAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGACCTGTTACCTCTCAAAATAAATAAACAAATAATATTTTGAATG  500

seq1  TGGTGATGAGCTTTCTGAGTAATCTTGACATAAATGCAATGTAAATTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGATGAGCTTTCTGAGTAATCTTGACATAAATGCAATGTAAATTCTT  550

seq1  TTCTTTATATTAAATCTAATGATATTTTAATATATTTCAAATATCCAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTATATTAAATCTAATGATATTTTAATATATTTCAAATATCCAAAG  600

seq1  ACTTCCCTAGAAGTCACTTTCTTTGCTCCTATAAAAGACAGTATTGAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCCTAGAAGTCACTTTCTTTGCTCCTATAAAAGACAGTATTGAAGT  650

seq1  CTTAAAAATTTAGTTGAAGCTATGAGTAGTCCCAGCTTCCCAAGAGGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAAATTTAGTTGAAGCTATGAGTAGTCCCAGCTTCCCAAGAGGCTG  700

seq1  AGGCAAGAATCTTGACCAGTTCAAGGTCAGTCTTAGCTATA-GGGGGAGT  749
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGGCAAGAATCTTGACCAGTTCAAGGTCAGTCTTAGCTATAGGGGGGAGT  750

seq1  TCCAGACCTCCATGGACAGC-TTAGTGATTCCCTGTCCCAAAATACACAG  798
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TCCAGACCTCCATGGACAGCTTTAGTGATTCCCTGTCCCAAAATACACAG  800

seq1  TGAAAGCAGCGAAGACCTCAAACTCCGTGGCAGTGTTTGATCCACAATTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCAGCGAAGACCTCAAACTCCGTGGCAGTGTTTGATCCACAATTA  850

seq1  AAAAAATATTTGTAGGGTCCCTAATGGAGGAGCTAGAGAAAGTACCCAAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATATTTGTAGGGTCCCTAATGGAGGAGCTAGAGAAAGTACCCAAG  900

seq1  GACCTGAAGGGGTCTGCAACCCTATAGCTGGAACAATATGAACTAA-CCA  947
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GACCTGAAGGGGTCTGCAACCCTATAGCTGGAACAATATGAACTAACCCA  950

seq1  ATACCCCCACAGAGCTCGTGTCTCTAGCTGCATATGTATCAGAAGA-TGG  996
       |||||||||||||||||||||||| |||||||||||||||||||| || 
seq2  TTACCCCCACAGAGCTCGTGTCTCT-GCTGCATATGTATCAGAAGATTGC  999

seq1  CCTAGTCAGCCATCATTGAGAAGAGAGGCCT-CTTGGTC-TTGCAAACTT  1044
      ||||||||||||||||||||||||||||||| ||||||| ||||||||||
seq2  CCTAGTCAGCCATCATTGAGAAGAGAGGCCTCCTTGGTCTTTGCAAACTT  1049

seq1  TATATGCCCCAGTACAGGGGAATGCCAGGGCCAAGAAGTA  1084
      ||| ||||||||||||||||||||||||| ||||||||||
seq2  TATTTGCCCCAGTACAGGGGAATGCCAGGTCCAAGAAGTA  1089

seq1: chr7_78943799_78944923
seq2: B6Ng01-097I20.g_69_1181 (reverse)

seq1  TTTCTTCCTGGAAATAACAACCATAAAACATTAACATCTTTTTTTACATA  50
      |||| |||| |||||||||||  ||||||| | ||||| | |||||||| 
seq2  TTTC-TCCT-GAAATAACAAC--TAAAACAAT-ACATC-TCTTTTACAT-  43

seq1  AATCAACCTACATAGATATCAAGAGGAAAGGGAAATTTGAGGTGGTTAAA  100
      ||||||||||||  ||| || |||||||||||||  ||||||||| | ||
seq2  AATCAACCTACA-GGATTTC-AGAGGAAAGGGAA--TTGAGGTGGGTTAA  89

seq1  AATTGAGGCTGACTTCTAAATTTTGTCTATATTTGAAAAGCTTATGTTAA  150
      ||||||||||||||||  || |||||||||||||||||||| ||||||||
seq2  AATTGAGGCTGACTTCCTAAATTTGTCTATATTTGAAAAGC-TATGTTAA  138

seq1  GGTCAAAAGGGGATAAGAAAAAGATGAATAATTATCTTCATAAGAATGGG  200
      |||||||||||||| |||||||||||||||| ||||||||||||||||||
seq2  GGTCAAAAGGGGATTAGAAAAAGATGAATAA-TATCTTCATAAGAATGGG  187

seq1  TCTTGTGCCTCTGTTCATCAAGCCAAGCCAAGATCAGCGGGTAGCATCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTGCCTCTGTTCATCAAGCCAAGCCAAGATCAGCGGGTAGCATCTT  237

seq1  CGACACCACGAAGCACACTATTTTGCACACGGTTTGAATTCTGACTGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACACCACGAAGCACACTATTTTGCACACGGTTTGAATTCTGACTGCTG  287

seq1  AGGACTTCCTAGCTATTCACTGAACGTCTTCTGTCATGTTCATTTTCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTTCCTAGCTATTCACTGAACGTCTTCTGTCATGTTCATTTTCAAA  337

seq1  AGGATATAATTTCCTATG-AAAACTGTAACACACCAACTTTCAAAGGAAG  399
      |||||||||||||||||| |||||||||||||||| ||||||||||||||
seq2  AGGATATAATTTCCTATGAAAAACTGTAACACACCCACTTTCAAAGGAAG  387

seq1  CCGCAGCAGGTAGGTGGAGATGGCACCGTGTTTCCTAACTGGTGATTAGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCAGCAGGTAGGTGGAGATGGCACCGTGTTTCCTAACTGGTGATTAGC  437

seq1  AAATTTATTGCATGATAAACCATTTTCAGTGCAGTTTTGAAAAATAAAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTATTGCATGATAAACCATTTTCAGTGCAGTTTTGAAAAATAAAAA  487

seq1  CATGCCTCTTTCTGAGTAATTAGTTGCTCTTTACCGCCAACAAACTGTAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCTCTTTCTGAGTAATTAGTTGCTCTTTACCGCCAACAAACTGTAA  537

seq1  TTTTTATTCCTTTTACAGAAGCCCATGTATTAGAAAAGAGAGCTAGCAAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTCCTTTTACAGAAGCCCATGTATTAGAAAAGAGAGCTAGCAAG  587

seq1  CATTTCTGCTTTTGTGTTTACAGTGCAGAGAAGACATGGCATGCAAAACC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTGCTTTTGTGTTTACAGTGCAGAGAAGACATGGCATGCAAAACC  637

seq1  TGCTATGAGGATTCTGAATGGCGCTATATTTTAAAATCCACATTAATTAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATGAGGATTCTGAATGGCGCTATATTTTAAAATCCACATTAATTAT  687

seq1  AGATCCACTTATTCTTAGAAAAGACAGGAATTGCAGTGGGCTGGTGGGTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCACTTATTCTTAGAAAAGACAGGAATTGCAGTGGGCTGGTGGGTA  737

seq1  GGGGGTAGGGATTCATGTATAAATTGCCTCCCAAAGACCTCACTGAAATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTAGGGATTCATGTATAAATTGCCTCCCAAAGACCTCACTGAAATT  787

seq1  TCCATAACATTCACCACATGACACTGATGTGTGAAAATTGACACGAAGAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAACATTCACCACATGACACTGATGTGTGAAAATTGACACGAAGAT  837

seq1  TTGAAAATTGGGACTGAAGGAGTCCAAGCATAAAATAACTTCAATTCTGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAATTGGGACTGAAGGAGTCCAAGCATAAAATAACTTCAATTCTGC  887

seq1  ACTCTCTCTATCTCTCAGAGGAATAGCGCATAAGACTGACCAACACAACA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCTCTATCTCTCAGAGGAATAGCGCATAAGACTGACCAACACAACA  937

seq1  CAAACAAGCTGAGGGGGGGATATCCAGGGAGAAGGATAGGAGTTATTAAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAGCTGAGGGGGGGATATCCAGGGAGAAGGATAGGAGTTATTAAG  987

seq1  GAGAAAACACACTTCTCACTCACGGAGAGAAAGGATGATCAATGGATTTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAACACACTTCTCACTCACGGAGAGAAAGGATGATCAATGGATTTA  1037

seq1  GTCACAGAGAAATTCAAGCAGAAAATTGCTGCTGTTTTTTATCTGAACAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAGAGAAATTCAAGCAGAAAATTGCTGCTGTTTTTTATCTGAACAG  1087

seq1  CAGAAAGTTTAAGCACACTAGAATTC  1125
      ||||||||||||||||||||||||||
seq2  CAGAAAGTTTAAGCACACTAGAATTC  1113