BAC Information

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BAC

Clone NameB6Ng01-098A21
Chromosome7 (Build37)
Map Location 86,718,192 - 86,838,931
singlet/doubletdoublet
Overlap geneRhcg, 5730590G19Rik
Upstream geneNtrk3, Mrpl46, Mrps11, Det1, Isg20l1, Isg20, Acan, Hapln3, Mfge8, Abhd2, Rlbp1, BC025462, Polg, AI854517
Downstream genePlin, Pex11a, EG626359, EG665900, Mesp1, Mesp2, Anpep, Ap3s2, 2610034B18Rik, Zfp710, Idh2, Sema4b, Cib1, D330012F22Rik, LOC100042374, LOC100042379, Ttll13, Ngrn, Vps33b, Prc1, Rccd1, Unc45a, Hddc3, Man2a2, Fes, Furin, LOC384647, Blm, Crtc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098A21.bB6Ng01-098A21.g
ACCDH908253DH908254
length5821,137
definitionDH908253|Mus musculus domesticus DNA, BAC clone: B6Ng01-098A21, 5' end.DH908254|Mus musculus domesticus DNA, BAC clone: B6Ng01-098A21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,838,349 - 86,838,931)(86,718,192 - 86,719,314)
sequence
gaattcactgagtgtggccatgtgcagtctgacgaacattgaggtggctg
gacatcagactctctgggtgtgctgggtagctttgtgaggggaggagagg
tctcttcttttgctggggagactgtcttttgagaagtgacttttgatgca
aatggtgagttgtaaccgtgtgaggagggggtttttatggttgcttcaga
aatggtcccttcagctgatgtcatttctgtaggggagttttgtagtcttt
ctggagtgtatagtaaggtctgtgctgtacgagggaatcttcttggtgta
gttttagaaaagcttggagatttctggttactctttttgggagtctgaaa
aaaaaactcatttcagagtttgaatattataatccatattctctaaagat
tgtcttagtaaagtctaagaccactagaaaactaaacagaagatttaaag
tcagctaaaagaatgatcttaagttggaatctagaatagtgacctgttcc
ctctcccaaacataattagattttactggcatacttttcctagattcaaa
aaaggagagggtgggaggatggagatggaaga
gaattcaaagtaagccttgattattaccgagcccatagggagggaaacgg
gaatcccaaggctacagacacctggcctctgtctgcccagactctcttgg
tgcggagagcaccaagaaccagcctctgcttgtccccgtgggaggggcta
ctcttgaatgtgctcttgcgggggtggggggcgttggggactacacaggg
acacaacaagaggacacaggacaccattctggtcctttcatctgtttgag
aaagagccagcaaagcggtttggcttgcactaacctcttgcctctctacc
ctaagaaggtagactccgcaccgggagtcctctcagagataagactcctg
tctgtcagcctgggtttctctcttcccagctttcctccatgtcagggagg
tggtgggtccaggcctaggtcctttcctgcatacaaaaggccattctcag
ccatcagaggaagcctctagtatcagtttccctccatgaactcatgcctg
tccctgtagcaatggaagtgggccagctggcacttcctctctcctccccc
ttctcctgtccttctttttctaccacactctcttctctacttcctgccct
gctctcctgcctccctctccctcctctccttcctctcttcctctcctttc
ctctccttcctctctactatccttctttctttcatcctcctgtgtctcac
agcctccttcctcagctcatttaactgaagcctttaatttccccctattc
ttcttttacacatgggctcagagagggcatacaacttgcccaaggtcaca
cagcttgaccatggaaaataaaaatcatcgtggtcaccttctactgagta
tctaagtctcagactaggtacgttgagcctatgacatcagatctatagaa
tggggattacagcttcctattattttgtaccagggatctgaaacatagag
acatataacaagtttgtcccaggatccagctcgactcttgcctcacctgc
acccagccaggaagaaccttaatgcagtggccttagtcttgtttccctct
gcttcaggcattcatctacactgaagtctccagaagctacttgaggactc
cacaggggcctcccataagggcagcctgtgcctgaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_86838349_86838931
seq2: B6Ng01-098A21.b_32_614 (reverse)

seq1  TCTTCCATCTCCATCCTCCCACCCTCTCCTTTTTTGAATCTAGGAAAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCATCTCCATCCTCCCACCCTCTCCTTTTTTGAATCTAGGAAAAGT  50

seq1  ATGCCAGTAAAATCTAATTATGTTTGGGAGAGGGAACAGGTCACTATTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAGTAAAATCTAATTATGTTTGGGAGAGGGAACAGGTCACTATTCT  100

seq1  AGATTCCAACTTAAGATCATTCTTTTAGCTGACTTTAAATCTTCTGTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCCAACTTAAGATCATTCTTTTAGCTGACTTTAAATCTTCTGTTTA  150

seq1  GTTTTCTAGTGGTCTTAGACTTTACTAAGACAATCTTTAGAGAATATGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTAGTGGTCTTAGACTTTACTAAGACAATCTTTAGAGAATATGGA  200

seq1  TTATAATATTCAAACTCTGAAATGAGTTTTTTTTTCAGACTCCCAAAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATATTCAAACTCTGAAATGAGTTTTTTTTTCAGACTCCCAAAAAG  250

seq1  AGTAACCAGAAATCTCCAAGCTTTTCTAAAACTACACCAAGAAGATTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACCAGAAATCTCCAAGCTTTTCTAAAACTACACCAAGAAGATTCCC  300

seq1  TCGTACAGCACAGACCTTACTATACACTCCAGAAAGACTACAAAACTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTACAGCACAGACCTTACTATACACTCCAGAAAGACTACAAAACTCCC  350

seq1  CTACAGAAATGACATCAGCTGAAGGGACCATTTCTGAAGCAACCATAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGAAATGACATCAGCTGAAGGGACCATTTCTGAAGCAACCATAAAA  400

seq1  ACCCCCTCCTCACACGGTTACAACTCACCATTTGCATCAAAAGTCACTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCTCCTCACACGGTTACAACTCACCATTTGCATCAAAAGTCACTTC  450

seq1  TCAAAAGACAGTCTCCCCAGCAAAAGAAGAGACCTCTCCTCCCCTCACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGACAGTCTCCCCAGCAAAAGAAGAGACCTCTCCTCCCCTCACAA  500

seq1  AGCTACCCAGCACACCCAGAGAGTCTGATGTCCAGCCACCTCAATGTTCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACCCAGCACACCCAGAGAGTCTGATGTCCAGCCACCTCAATGTTCG  550

seq1  TCAGACTGCACATGGCCACACTCAGTGAATTCC  583
      |||||||||||||||||||||||||||||||||
seq2  TCAGACTGCACATGGCCACACTCAGTGAATTCC  583

seq1: chr7_86718192_86719314
seq2: B6Ng01-098A21.g_66_1202

seq1  GAATTCAAAGTAAGCCTTGATTATTACCGAGCCCATAGGGAGGGAAACGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGTAAGCCTTGATTATTACCGAGCCCATAGGGAGGGAAACGG  50

seq1  GAATCCCAAGGCTACAGACACCTGGCCTCTGTCTGCCCAGACTCTCTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCCAAGGCTACAGACACCTGGCCTCTGTCTGCCCAGACTCTCTTGG  100

seq1  TGCGGAGAGCACCAAGAACCAGCCTCTGCTTGTCCCCGTGGGAGGGGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGGAGAGCACCAAGAACCAGCCTCTGCTTGTCCCCGTGGGAGGGGCTA  150

seq1  CTCTTGAATGTGCTCTTGCGGGGGTGGGGGGCGTTGGGGACTACACAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGAATGTGCTCTTGCGGGGGTGGGGGGCGTTGGGGACTACACAGGG  200

seq1  ACACAACAAGAGGACACAGGACACCATTCTGGTCCTTTCATCTGTTTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAACAAGAGGACACAGGACACCATTCTGGTCCTTTCATCTGTTTGAG  250

seq1  AAAGAGCCAGCAAAGCGGTTTGGCTTGCACTAACCTCTTGCCTCTCTACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGCCAGCAAAGCGGTTTGGCTTGCACTAACCTCTTGCCTCTCTACC  300

seq1  CTAAGAAGGTAGACTCCGCACCGGGAGTCCTCTCAGAGATAAGACTCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAAGGTAGACTCCGCACCGGGAGTCCTCTCAGAGATAAGACTCCTG  350

seq1  TCTGTCAGCCTGGGTTTCTCTCTTCCCAGCTTTCCTCCATGTCAGGGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCAGCCTGGGTTTCTCTCTTCCCAGCTTTCCTCCATGTCAGGGAGG  400

seq1  TGGTGGGTCCAGGCCTAGGTCCTTTCCTGCATACAAAAGGCCATTCTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGGTCCAGGCCTAGGTCCTTTCCTGCATACAAAAGGCCATTCTCAG  450

seq1  CCATCAGAGGAAGCCTCTAGTATCAGTTTCCCTCCATGAACTCATGCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAGAGGAAGCCTCTAGTATCAGTTTCCCTCCATGAACTCATGCCTG  500

seq1  TCCCTGTAGCAATGGAAGTGGGCCAGCTGGCACTTCCTCTCTCCTCCCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGTAGCAATGGAAGTGGGCCAGCTGGCACTTCCTCTCTCCTCCCCC  550

seq1  TTCTCCTGTCCTTCTTTTTCTACCACACTCTCTTCTCTACTTCCTGCCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTGTCCTTCTTTTTCTACCACACTCTCTTCTCTACTTCCTGCCCT  600

seq1  GCTCTCCTGCCTCCCTCTCCCTCCTCTCCTTCCTCTCTTCCTCTCCTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCCTGCCTCCCTCTCCCTCCTCTCCTTCCTCTCTTCCTCTCCTTTC  650

seq1  CTCTCCTTCCTCTCTACTATCCTTCTTTCTTTCATCCTCCTGTGTCTCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTTCCTCTCTACTATCCTTCTTTCTTTCATCCTCCTGTGTCTCAC  700

seq1  AGCCTCCTTCCTCAGCTCATTTAACTGAAGCCTTTAATTTCCCCCTATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCCTTCCTCAGCTCATTTAACTGAAGCCTTTAATTTCCCCCTATTC  750

seq1  TTCTTTTACACATGGGCTCAGAGAGGGCATACAACTTGCCCAAGGTCACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTACACATGGGCTCAGAGAGGGCATACAACTTGCCCAAGGTCACA  800

seq1  CAGCTTGACCATGG-AAATAAAAATCATCGTGGTCACCTTCTACTGAGTA  849
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CAGCTTGACCATGGAAAATAAAAATCATCGTGGTCACCTTCTACTGAGTA  850

seq1  TCTAAGTCTCAGACTAGGTACGTTGAGCCTATGACATCAGATCTATAGAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGTCTCAGACTAGGTACGTTGAGCCTATGACATCAGATCTATAGAA  900

seq1  TGGGGATTACAGCTTCCTATTATTTTGTACCAGGGATCTGAAACATAGAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGATTACAGCTTCCTATTATTTTGTACCAGGGATCTGAAACATAGAG  950

seq1  ACATATAAC-AGTTTGTCCCAGGATCCAGCCCGACTCT--GCTCA-CTGC  995
      ||||||||| |||||||||||||||||||| |||||||   |||| ||||
seq2  ACATATAACAAGTTTGTCCCAGGATCCAGCTCGACTCTTGCCTCACCTGC  1000

seq1  CACCAGCCAGG-AGA--CCTAATGCAGTGG-CTTAGTCTTGTTCCCTCCT  1041
        ||||||||| |||  | ||||||||||| |||||||||||| ||  ||
seq2  ACCCAGCCAGGAAGAACCTTAATGCAGTGGCCTTAGTCTTGTTTCCCTCT  1050

seq1  GC-TCAGGCATCCATCATCACTG-AGTCTCCAGAAGCTACTTGAGGACT-  1088
      || |||||||| ||||  ||||| ||||||||||||||||||||||||| 
seq2  GCTTCAGGCATTCATCTACACTGAAGTCTCCAGAAGCTACTTGAGGACTC  1100

seq1  CACAGGGGCCT-CCATTAGGCCAGCCTG-CCCTGAAC  1123
      ||||||||||| |||| ||| |||||||  |||||||
seq2  CACAGGGGCCTCCCATAAGGGCAGCCTGTGCCTGAAC  1137