BAC Information

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BAC

Clone NameB6Ng01-098D20
Chromosome7 (Build37)
Map Location 19,944,965 - 19,946,048
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC546936, Psg28, LOC666831, EG574429, EG232930, Psg25, EG545925, Psg23, Psg21, EG434540, BC050099, LOC666863, Sycp1-ps1, Psg19, Psg17, Mill2, Pglyrp1, C530028I08Rik, Nova2, Nanos2, P42pop, Irf2bp1, Foxa3, Sympk, Rshl1, Dmwd, Dmpk, Six5, EG243866, Fbxo46, Qpctl, Snrpd2, Gipr, Eml2, Gpr4, Opa3, Vasp, C79127, Rtn2, Fosb, D830036C21Rik, Ercc1, Cd3eap
Downstream genePpp1r13l, Ercc2, Klc3, Ckm, Mark4, 4933417E01Rik, Bloc1s3, Trappc6a, Nkpd1, BC024868, Gemin7, Zfp296, Sfrs16, Relb, Clptm1, Apoc2, Apoc4, Apoc1, Apoe, Tomm40, Pvrl2, Bcam, Cblc, Bcl3, Ceacam16, Ceacam19, Pvr, 2210010C17Rik, EG243872, Ceacam20, Nlrp9b, EG667040, EG667067, LOC620401, V1rd21, EG620537, LOC100043519, EG620574, LOC100043523, EG545926, LOC100043528, LOC100042964, LOC100042966
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098D20.b
ACCDH908385
length1,092
definitionDH908385|Mus musculus domesticus DNA, BAC clone: B6Ng01-098D20, 5' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccgagccagcctggactacataaagagaccctgtctcaaaaaaac
aaaacaaaacatcacagcattggcgatttactggcgtgcctagcaacaag
ctgaactacaatccccagcagactcctgaccgacgtccatcgccagccac
cttcgagttatctgggaattggagttttgaagcccacaaagggcgagccc
cagagtttctcgcccacgcgcgagggtggacacatagtctggagattcct
ggcggagggaacactccttcgtagccttggtgacctctgttctcaaaagc
ctcagaagaaggggggagcatcccaatgctggaggagtctccaaaatctc
cgcagaaggggcgggcagcgacgctgacacaccggccaggaatgcagtcg
agtctccctgtctcgccaccgtcccgcggctccacccgccaccccatgcg
ctgcagtcctgctgggagggggcgtgggcacgtcccccaaatcccacgtg
cacgcgccgctgtttacttgggccgcggagcagacagggaccgaccagct
gcacctctacctgcctcggaaccgtgaggaatacttcccattccggacac
taagtccacgaggacatctacaagtcttccctgacactaaccctcacccc
gtttcaagccaggctctggggctctggggtccgaggctcctcccatgact
cttcagactcctccccctcagtttcccgcttctccctagactttcagaag
ctccgcctctgattgctaattaaaatgcttccgttcgtacacttttctct
attttcccgacctgggttcagttaaattctttccacgttcgctgcaccag
gggacttccaagatacactctagctttaaaagtacaatcgtgacaaccag
aatccttacctagcttttgcaagaatgctgcaaatagatctttctgtctc
tttaaagccgtgcctaggcagttcactgccctttaagacggggtggaaga
aaccacgtgagcaaagttgtctggggtaactgcacccttagatccgagct
tgtttggctttcttgacgaacagggaaactgaattccccctg
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_19944965_19946048
seq2: B6Ng01-098D20.b_47_1138 (reverse)

seq1  CAGGGGGAAATCAG-TTCCCTGTTCGTC-AGAAACGCAAGCTAGCTCGGA  48
      ||||||||| |||| ||||||||||||| |||||  ||| | ||||||||
seq2  CAGGGGGAATTCAGTTTCCCTGTTCGTCAAGAAAGCCAAACAAGCTCGGA  50

seq1  TCT-AGGGTGCCTGTTCCCCCGACAACTTTGCTCACGTGGTTTCTTCCAA  97
      ||| |||||||   | |||| ||||||||||||||||||||||||||| |
seq2  TCTAAGGGTGCAGTTACCCCAGACAACTTTGCTCACGTGGTTTCTTCC-A  99

seq1  CACCGTCTTAAAGGGGCAGTGACTCGCCTAGGCCACGGCTTTTAAAGAGA  147
      | |||||||||| |||||||||   ||||||| |||||| ||||||||||
seq2  CCCCGTCTTAAA-GGGCAGTGAACTGCCTAGG-CACGGC-TTTAAAGAGA  146

seq1  CAG-AAGATCTATTTGCAGCATTCTTGCAAAAGCTAGGTAAGAATTCTGG  196
      ||| |||||||||||||||||||||||||||||||||||||| |||||||
seq2  CAGAAAGATCTATTTGCAGCATTCTTGCAAAAGCTAGGTAAGGATTCTGG  196

seq1  TTGTCACGATTGTACTTTTAAAGCTAGAGTGTATCTTCGGAAGT-CCCTG  245
      ||||||||||||||||||||||||||||||||||||| |||||| |||||
seq2  TTGTCACGATTGTACTTTTAAAGCTAGAGTGTATCTT-GGAAGTCCCCTG  245

seq1  GTGCAGCGAACGTGGAA--GATTTAACTGAA-CCAGGTC-GGAAAATAGA  291
      |||||||||||||||||   ||||||||||| ||||||| ||||||||||
seq2  GTGCAGCGAACGTGGAAAGAATTTAACTGAACCCAGGTCGGGAAAATAGA  295

seq1  GAAAAGTGTACGAACGG-AGCATTTTAA-TAGCAATCAGAGGCGGAGCTT  339
      ||||||||||||||||| |||||||||| |||||||||||||||||||||
seq2  GAAAAGTGTACGAACGGAAGCATTTTAATTAGCAATCAGAGGCGGAGCTT  345

seq1  CTG-AAGTCTAGGG-GAAGCGGGAAACTGAGGGGGAGGAGTCTGCAGAGT  387
      ||| |||||||||| ||||||||||||||||||||||||||||| |||||
seq2  CTGAAAGTCTAGGGAGAAGCGGGAAACTGAGGGGGAGGAGTCTGAAGAGT  395

seq1  CATGGGAGGAGCCTCGGACCCCAGAGCCCCAGAGCCTGGCTTGAAACGGG  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGAGGAGCCTCGGACCCCAGAGCCCCAGAGCCTGGCTTGAAACGGG  445

seq1  GTGAGGGTTAGTGTCAGGGAAGACTTGTAGATGTCCTCGTGGACTTAGTG  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGGTTAGTGTCAGGGAAGACTTGTAGATGTCCTCGTGGACTTAGTG  495

seq1  TCCGGAATGGGAAGTATTCCTCACGGTTCCGAGGCAGGTAGAGGTGCAGC  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGAATGGGAAGTATTCCTCACGGTTCCGAGGCAGGTAGAGGTGCAGC  545

seq1  TGGTCGGTCCCTGTCTGCTCCGCGGCCCAAGTAAACAGCGGCGCGTGCAC  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCGGTCCCTGTCTGCTCCGCGGCCCAAGTAAACAGCGGCGCGTGCAC  595

seq1  GTGGGATTTGGGGGACGTGCCCACGCCCCCTCCCAGCAGGACTGCAGCGC  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGATTTGGGGGACGTGCCCACGCCCCCTCCCAGCAGGACTGCAGCGC  645

seq1  ATGGGGTGGCGGGTGGAGCCGCGGGACGGTGGCGAGACAGGGAGACTCGA  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGTGGCGGGTGGAGCCGCGGGACGGTGGCGAGACAGGGAGACTCGA  695

seq1  CTGCATTCCTGGCCGGTGTGTCAGCGTCGCTGCCCGCCCCTTCTGCGGAG  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATTCCTGGCCGGTGTGTCAGCGTCGCTGCCCGCCCCTTCTGCGGAG  745

seq1  ATTTTGGAGACTCCTCCAGCATTGGGATGCTCCCCCCTTCTTCTGAGGCT  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGGAGACTCCTCCAGCATTGGGATGCTCCCCCCTTCTTCTGAGGCT  795

seq1  TTTGAGAACAGAGGTCACCAAGGCTACGAAGGAGTGTTCCCTCCGCCAGG  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGAACAGAGGTCACCAAGGCTACGAAGGAGTGTTCCCTCCGCCAGG  845

seq1  AATCTCCAGACTATGTGTCCACCCTCGCGCGTGGGCGAGAAACTCTGGGG  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCCAGACTATGTGTCCACCCTCGCGCGTGGGCGAGAAACTCTGGGG  895

seq1  CTCGCCCTTTGTGGGCTTCAAAACTCCAATTCCCAGATAACTCGAAGGTG  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGCCCTTTGTGGGCTTCAAAACTCCAATTCCCAGATAACTCGAAGGTG  945

seq1  GCTGGCGATGGACGTCGGTCAGGAGTCTGCTGGGGATTGTAGTTCAGCTT  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCGATGGACGTCGGTCAGGAGTCTGCTGGGGATTGTAGTTCAGCTT  995

seq1  GTTGCTAGGCACGCCAGTAAATCGCCAATGCTGTGATGTTTTGTTTTGTT  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTAGGCACGCCAGTAAATCGCCAATGCTGTGATGTTTTGTTTTGTT  1045

seq1  TTTTTGAGACAGGGTCTCTTTATGTAGTCCAGGCTGGCTCGGAATTC  1084
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGAGACAGGGTCTCTTTATGTAGTCCAGGCTGGCTCGGAATTC  1092