BAC Information

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BAC

Clone NameB6Ng01-098I06
Chromosome7 (Build37)
Map Location 53,816,367 - 53,958,979
singlet/doubletdoublet
Overlap geneSergef, Tph1, Saal1
Upstream geneHsd17b14, Bcat2, Fgf21, Fut1, Izumo1, Rasip1, 5430432N15Rik, Fut2, Sec1, Gm484, Car11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4, Sult2b1, EG545963, Lmtk3, Pscd2, Kcnj14, Grwd1, Grin2d, Kdelr1, Syngr4, Tmem143, Emp3, BC013491, LOC677321, Abcc6, Nomo1, Kcnj11, Abcc8, Ush1c, Otog, Myod1, Kcnc1
Downstream geneSaa3, Saa4, LOC100040106, Saa1, Saa2, Hps5, Gtf2h1, EG668838, EG384622, Ldha, Ldhc, Tsg101, Uevld, C86187, LOC384623, ENSMUSG00000056509, Spty2d1, LOC100040174, Tmem86a, Ptpn5, LOC100041710, Mrgpra6, EG668725, Gm660, Mrgpra1, LOC668846, LOC100040217, LOC668727, Mrgpra2, LOC638950, Mrgprc4-ps, LOC677457, EG668729, Mrgpra3, Mrgprc1-ps, LOC100040314
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098I06.bB6Ng01-098I06.g
ACCDH908585DH908586
length774782
definitionDH908585|Mus musculus domesticus DNA, BAC clone: B6Ng01-098I06, 5' end.DH908586|Mus musculus domesticus DNA, BAC clone: B6Ng01-098I06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,816,367 - 53,817,138)(53,958,196 - 53,958,979)
sequence
gaattctatgccactaactaggacttctccagggggaaagttccagactc
tctctgggccacctactttgttgagtgtaaaatcacttaagtaaggcgag
ttgactgatggaatagcctgtatttcctatctgcttacataactctgcat
tgtcaaagagcaccgataaccagtgctgtcatttcgcatacccctaaggg
gggaaaacctccactggggctctttctacatttgttttcaattgtcagat
tccccagaggagaaaaatcgaatcactactgctattccaaacctcgcgct
ctgggcagccactcaagagacaataggacagctccatttctgatctctct
gaggtaggaagacaccccatagcataaaggaaagatggaacgtgtgtgtg
tgtgtgtgtgtgtgtgtacattcaaaatattggaaggaaaccccaaacta
actgacaggaggatcaggggtcatcctgtttcaccccatgatcttttcca
ataaaactttagtttttatggaagaacctgtatatttccccttcatccct
tgtcatattatactcagcacacatctatgggaaaaccattaatttgttag
gatctgtgacagacagggatcacaacgctggtgctccccacagtgtacct
gccctcactctctcctgggactatcatgctctgcaggcttggacaggttt
aaacgctccccccaccatgcatattcccctctatacctcccccaccactg
aactcacaccacccctctctcttt
gaattcatacgcgcaagcctagaggctaattctcctctacaagccaggaa
gctttgggcagaggctttttagtagcagagtctcactcacgtgcttacca
tagaccggacagcactgtgacttacatggtaaatttgatgggcatattca
ctttcttgttgatggttcgtggctgttaccgagattcttaatgaaggaag
tctgtgtccagcataagttaaagctgttgtcccggccagtgcttatcaca
gagtcagaggttttatccctgttctcaggtacctgggcctcttgaattgt
ttttgttacgttcacacactagctactccatgctgaattgaagagcgagt
gaagggtgattttgtgtcactggaaaacagataaaaagatgcacagataa
cccacagaatttttaaggaaaagtcatcaagttcttccatgtcaaattag
atgcaacgtgagaagtgtgttagcagacgtgtagagtagagcgaggaggt
gactgccgagaagtccgggcacctgggagaggggaccgtgatttggaacg
gaatggaatggaggctgcagaagggcagctgtgttattccttagacacat
gaatgcttgctctaaaagaagttctcacactgtgggtcatgacccattta
gggtcacatatcagattttactttatgattcatagcaggagcccaagtac
acttatgaagtagtagcgacagctattaagttacatcaaaataactgtct
ggtgggtgggtgggtcaccatactctgaagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_53816367_53817138
seq2: B6Ng01-098I06.b_44_817

seq1  GAATTCTATGCCACTAACTAGGACTTCTACAGGGGGAAAGTTCCAGACTC  50
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GAATTCTATGCCACTAACTAGGACTTCTCCAGGGGGAAAGTTCCAGACTC  50

seq1  TCTCTGGGCCACCTACTTTGTTGAGTGTAAAATCACTTAAGTAAGGCGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGGCCACCTACTTTGTTGAGTGTAAAATCACTTAAGTAAGGCGAG  100

seq1  TTGACTGATGGAATAGCCTGTATTTCCTATCTGCTTACATAACTCTGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTGATGGAATAGCCTGTATTTCCTATCTGCTTACATAACTCTGCAT  150

seq1  TGTCAAAGAGCACCGATAACCAGTGCTGTCATTTCGCATACCCCTAAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAAGAGCACCGATAACCAGTGCTGTCATTTCGCATACCCCTAAGGG  200

seq1  GGGAAAACCTCCACTGGGGCTCTTTCTACATTTGTTTTCAATTGTCAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAACCTCCACTGGGGCTCTTTCTACATTTGTTTTCAATTGTCAGAT  250

seq1  TCCCCAGAGGAGAAAAATCAAATCACTACTGCTATTCCGAACCTCGCGCT  300
      ||||||||||||||||||| |||||||||||||||||| |||||||||||
seq2  TCCCCAGAGGAGAAAAATCGAATCACTACTGCTATTCCAAACCTCGCGCT  300

seq1  CTGGGCAGCCACTCAGGAGACAATAGGACAGCTCCATTTCTGATCTCTCT  350
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTGGGCAGCCACTCAAGAGACAATAGGACAGCTCCATTTCTGATCTCTCT  350

seq1  GAGGTAGGAAGACACCCCATAGCATAAAGGAAAGATGGAACGTGTGTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAGGAAGACACCCCATAGCATAAAGGAAAGATGGAACGTGTGTGTG  400

seq1  TGTGTGTGTGTGTGTGTACATTCAAAATATAGGAAGGAAACCCAAAACAG  450
      |||||||||||||||||||||||||||||| |||||||||||| ||||  
seq2  TGTGTGTGTGTGTGTGTACATTCAAAATATTGGAAGGAAACCCCAAACTA  450

seq1  ACTGACGGGAGGAGCTGGGGGTAAGCTGTTTGGAACCATGATGCATTGCA  500
      |||||| |||||| | ||||  |  ||||||    |||||||   || ||
seq2  ACTGACAGGAGGATCAGGGGTCATCCTGTTTCACCCCATGATCTTTTCCA  500

seq1  AGATAACTTTAGTTATTATGTAAGAAGCAAAAGCTTTCCCCAGCATCCCA  550
      | | |||||||||| ||||| ||||| |   |  |||||||  |||||| 
seq2  ATAAAACTTTAGTTTTTATGGAAGAACCTGTATATTTCCCCTTCATCCC-  549

seq1  TTCACATATT-CATTCAGCAAACATCCATGGGAAAACCATTAA-GTGATA  598
      ||  ||||||  | |||||| ||||| ||||||||||||||||  || ||
seq2  TTGTCATATTATACTCAGCACACATCTATGGGAAAACCATTAATTTGTTA  599

seq1  GGCACTGTGACAGACAGGTAGCAGAACACTGGCCCTCTCCACAGTGCTCC  648
      ||  |||||||||||||| | || ||| ||||  ||| ||||||||  ||
seq2  GGATCTGTGACAGACAGGGATCACAACGCTGGTGCTCCCCACAGTGTACC  649

seq1  TGCCCTCAGTCTGCAATGGGCCTTTCATCCTCTGCTGTCTCAGGTCTGGT  698
      |||||||| |||    |||| || |||| |||||| | ||  || | |||
seq2  TGCCCTCACTCTCTCCTGGGACTATCATGCTCTGCAGGCT-TGGACAGGT  698

seq1  TTAAACGCT-CCTCCACCATTCATATT-CTCTCTAAATCTCTCCCCACCA  746
      ||||||||| || ||||||| |||||| | ||||| | ||| ||||||||
seq2  TTAAACGCTCCCCCCACCATGCATATTCCCCTCTATACCTC-CCCCACCA  747

seq1  CT-CACCCACCCCACCCCTCTCTCTTT  772
      ||  || ||| ||||||||||||||||
seq2  CTGAACTCACACCACCCCTCTCTCTTT  774

seq1: chr7_53958196_53958979
seq2: B6Ng01-098I06.g_68_849 (reverse)

seq1  TTCTTCATGTTATGGTGACCCCCCCACCCACCATACAGTTATTTTGCTGT  50
      |||||||   ||||||||||| ||||||||||| |||||||||||| |||
seq2  TTCTTCAGAGTATGGTGACCCACCCACCCACCAGACAGTTATTTTGATGT  50

seq1  TACTTAATAGCTGTCGCTACTACTTCATAACTGTACTTTGGCTACTGTTA  100
       ||||||||||||||||||||||||||||| ||||||| |||| ||| ||
seq2  AACTTAATAGCTGTCGCTACTACTTCATAAGTGTACTTGGGCTCCTGCTA  100

seq1  TGAATCATAATGTAAATATCTGATATGTGACCCTAAATGGGTCATGACCC  150
      |||||||||| ||||| |||||||||||||||||||||||||||||||||
seq2  TGAATCATAAAGTAAA-ATCTGATATGTGACCCTAAATGGGTCATGACCC  149

seq1  ACAGTGTGAGAACTTCTTTTAGAGCAAGCACTCATGTGTCTAAGGAATAA  200
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ACAGTGTGAGAACTTCTTTTAGAGCAAGCATTCATGTGTCTAAGGAATAA  199

seq1  CACAGCTGCCCTTCTGCAGCCTCCATTCCATTCCGTTCCAAATCACGGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTGCCCTTCTGCAGCCTCCATTCCATTCCGTTCCAAATCACGGTC  249

seq1  CCCTCTCCCAGGTGCCCCTGACTTCTCGGCAGTCACCTCCTCGCTCTACT  300
      |||||||||||||| ||| |||||||||||||||||||||||||||||||
seq2  CCCTCTCCCAGGTG-CCCGGACTTCTCGGCAGTCACCTCCTCGCTCTACT  298

seq1  CTACACGTCTGCTAACACACTTCTCACGTTGCATCTAATTTGACATGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACGTCTGCTAACACACTTCTCACGTTGCATCTAATTTGACATGGAA  348

seq1  GAACTTGATGACTTTTCCTTAAAACTTCTTTGGGTTATCTGTGCATCTTT  400
      |||||||||||||||||||||||| |||| ||||||||||||||||||||
seq2  GAACTTGATGACTTTTCCTTAAAAATTCTGTGGGTTATCTGTGCATCTTT  398

seq1  TTATCTGTTTTCCAGTGACACAAAATCACCCTTCACTCGCTCTTCAATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTGTTTTCCAGTGACACAAAATCACCCTTCACTCGCTCTTCAATTC  448

seq1  AGCATGGAGTAGCTCGTGTGTGAACGTAACAAAAACAATTCAAGAGGCCC  500
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AGCATGGAGTAGCTAGTGTGTGAACGTAACAAAAACAATTCAAGAGGCCC  498

seq1  AGGTACCTGAGAACAGGGATAAAACCTCTGACTCTCTGATAAGCACTGGC  550
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGGTACCTGAGAACAGGGATAAAACCTCTGACTCTGTGATAAGCACTGGC  548

seq1  CGGGACAACAGCTTTAACTTATGCTGGACACAGACTTCCTTCATTAAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGACAACAGCTTTAACTTATGCTGGACACAGACTTCCTTCATTAAGAA  598

seq1  TCTCGGTAACAGCCACGAACCATCAACAAGAAAGTGAATATGCCCATCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGGTAACAGCCACGAACCATCAACAAGAAAGTGAATATGCCCATCAA  648

seq1  ATTTACCATGTAAGTCACAGTGCTCTCCGGTCTATGGTAAGCACCTGAGT  700
      |||||||||||||||||||||||| ||||||||||||||||||| |||||
seq2  ATTTACCATGTAAGTCACAGTGCTGTCCGGTCTATGGTAAGCACGTGAGT  698

seq1  GAGACTCTGCTACTAAAAAGCCTCTGCCCAAAGCTTCCTGGCTTGTAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTCTGCTACTAAAAAGCCTCTGCCCAAAGCTTCCTGGCTTGTAGAG  748

seq1  GAGAATTAGCCTCTAGGCTTGCGCCTCTGAATTC  784
      |||||||||||||||||||||||| | |||||||
seq2  GAGAATTAGCCTCTAGGCTTGCGCGTATGAATTC  782