BAC Information

Click to search

BAC

Clone NameB6Ng01-098L13
Chromosome7 (Build37)
Map Location 138,304,556 - 138,305,363
singlet/doubletsinglet
Overlap genenone
Upstream geneFgfr2, LOC546005, Ate1, LOC100043163, Nsmce4a, Tacc2, LOC619876, Btbd16, EG434249, Plekha1, Htra1, Dmbt1, 4933402N03Rik
Downstream gene5430419D17Rik, LOC546006, LOC100043173, Cuzd1, 1700007K09Rik, 1700063I17Rik, 2310057M21Rik, Pstk, Ikzf5, Acadsb, Hmx3, Hmx2, Bub3, LOC677073, LOC100043679, Gpr26, Cpxm2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098L13.bB6Ng01-098L13.g
ACCDH908731DH908732
length1,175955
definitionDH908731|Mus musculus domesticus DNA, BAC clone: B6Ng01-098L13, 5' end.DH908732|Mus musculus domesticus DNA, BAC clone: B6Ng01-098L13, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccatatggccgagaagtacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaatcctgagat
tccatctcacaccagtcagaatggctaagttcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaaggttgtactctggaaatcagtctgggggttcctcagaaaat
tggacatagtaccaccggaggattccgcaatacctctgctgggcatatat
ccagaagatgttccaactggtaagaaggacacatgctccactatgttcat
aacagccttatttataatagccagaagctggaaagaacccagatgcccct
caacagaggaatggatacagaaaatgtgatacatttacacaatggagtac
tactcagctattaaaaagaatgaatttatgaaattcctaggcaaacggtt
ggacctggagggcatcatcctgagtgaggtaacccaatcacaaaagaact
cacacaatatgtactcactgataagtggatattagtccagaaacttagaa
tacccaggatataagatacaatttgcaaaacacaggaaactcaagaagaa
cgaagaccaaagtggacactttgccccttcttagaattgggaacaaaaca
cccatggaaggagttacagagacaaagtttggagctgagatgaaaggatg
gaccatctagaaactgccatatccggggatctatcccataatcagcttct
aaacgctgacaccattgcatacactagcaagattttttgaaaggaccctg
atatagctgtctcttgtgagactatgccggggcctagcaaacatagaagt
ggatgctcacagtcagctattggatggatcacagggcccccaatggagga
gctagagaaagtaaccaaggagctaaagtatctgcaaccctataaggcgg
gacaacaatatgaactaacagtaccccccggagttcaggtctctagctgc
atatgtttcagaagaatggcctagtagccatcagttgagagaggcccatt
ggtctgtcaacttatattgcctcgtacagggacaccaggtccaaagtaat
ttgtaattgggtgtgctgtgctgga
gaattcttgtgtttctttgagtgctctctcactcctgagactagagtggg
ggtccccgaaagggggacttactttttgggggcttgtccgggatttggga
gcacccagaaaccctgagaataccccttggaggcatgtttgtttgtgtga
gtcttgtatgttgtctgttgtctaagtgtctaagtgtggcaccactgaat
ttgtgtcttggtttttcaattctgagattgtgggtcctacctgggttccc
agttctggtattctgtattctggcagctgccactgtggaccatgaggact
tagtggctgcgggagagagacgtcctaaggccctgcaagctgcaaccctg
gaagacgttccatgggtggaagggggtggaagcagagtcccccctgtcag
gaagggggtcgatgtggaaaccaacctccgtcaggaagtcatgtttggct
ggttgtacaagtccagatgcggatgagtatgcttggatatactgctgtct
ttttttctctgttgctgtcttaattttgtttgtggttttcgtcatgggac
acagaaactgtacatcggaggtaaaagtggaatccctccctgcctgtctg
tctatcttgctcacttgtgtgtcctccattagaccaccttctgattctgt
tttgctttttgtttgtctggtttcaggtatggttttggtccccaaggggt
ttgactgattatcttggtttggttttaggccggtctcgggttctgggggc
cttcccatggagagaggtccatttgggttggttgcagtgacagtgagaca
tgccaaaaacattggaggccacaacgcgagaagatgctctgtgtcaagct
tggaaagtggatctgaaaagtctttctcaacccagcagcagcttagggtt
caggtatatgccttggaaccgataatgtcaggcttctctggaaatcgctg
taaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_138304556_138305363
seq2: B6Ng01-098L13.g_189_1022

seq1  ACCCCTTGGAGGTATGTTTGTTTGTATGAGTCTTGTA-------TGTTGT  43
      |||||||||||| |||||||||||| |||||||||||       ||||||
seq2  ACCCCTTGGAGGCATGTTTGTTTGTGTGAGTCTTGTATGTTGTCTGTTGT  50

seq1  CTAAGTGTCTAAGTGTGGCACCACTGAATTTGTGTCTTGGTTTTTCAGTT  93
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CTAAGTGTCTAAGTGTGGCACCACTGAATTTGTGTCTTGGTTTTTCAATT  100

seq1  CTGAGATTGTGGGTTCCAGTCCCACCTGGGTTCCCAGTTCTGGTATTCTG  143
      ||||||||||||      |||| |||||||||||||||||||||||||||
seq2  CTGAGATTGTGG------GTCCTACCTGGGTTCCCAGTTCTGGTATTCTG  144

seq1  TATTCTGGCAGCTGCCACTGTGGACCGTGAGGACCTAGTGGCTGCAGCAG  193
      |||||||||||||||||||||||||| ||||||| |||||||||| | ||
seq2  TATTCTGGCAGCTGCCACTGTGGACCATGAGGACTTAGTGGCTGCGGGAG  194

seq1  GGAGACATCCTAAGGCCCTGCAAGCTGCAACCCTGGAAGACGTTCCACAG  243
       ||||| ||||||||||||||||||||||||||||||||||||||||  |
seq2  AGAGACGTCCTAAGGCCCTGCAAGCTGCAACCCTGGAAGACGTTCCATGG  244

seq1  GT--------------------------------GGAAGGGGGTCGATGT  261
      ||                                ||||||||||||||||
seq2  GTGGAAGGGGGTGGAAGCAGAGTCCCCCCTGTCAGGAAGGGGGTCGATGT  294

seq1  GGAATCCGACCCCCGTCAGGAAGTTGCGTTTGGCTCATTGTACAAGTCCA  311
      |||| || ||| ||||||||||||   ||||||||  |||||||||||||
seq2  GGAAACCAACCTCCGTCAGGAAGTCATGTTTGGCTGGTTGTACAAGTCCA  344

seq1  GGCTCGGACGAGTGTGCTTAGATATACTGGTGTCTTTTTTTCTCTGTTGC  361
      |   |||| |||| ||||| ||||||||| ||||||||||||||||||||
seq2  GATGCGGATGAGTATGCTTGGATATACTGCTGTCTTTTTTTCTCTGTTGC  394

seq1  TGTCTTGTTTTTGTTTGTGGTTTTCGTCATGGAACACAGACACCATACAT  411
      ||||||  |||||||||||||||||||||||| ||||||| ||  |||||
seq2  TGTCTTAATTTTGTTTGTGGTTTTCGTCATGGGACACAGAAACTGTACAT  444

seq1  CAGAGGT-AAAGTGGAATCCCTCCCTGCCTGTCTGTCTGTGTGTCTGTCT  460
      | ||||| |||||||||||||||||||||            |||||||||
seq2  CGGAGGTAAAAGTGGAATCCCTCCCTGCC------------TGTCTGTCT  482

seq1  GTCTTGTTCACTTGTGTGTCCTCCATTAGACCACCTTCTGATTCTGTTTT  510
       ||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGCTCACTTGTGTGTCCTCCATTAGACCACCTTCTGATTCTGTTTT  532

seq1  GCTTTTGGTTTGTCTGGTTTCAGGTCTGG-TTTGGT-CCCAAGGGG-TTG  557
      |||||| |||||||||||||||||| ||| |||||| ||||||||| |||
seq2  GCTTTTTGTTTGTCTGGTTTCAGGTATGGTTTTGGTCCCCAAGGGGTTTG  582

seq1  ACTGATTATCTTGGTTTGGTTTTAGGCCGGTCTCAGGTTCTGGGGGCCTT  607
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ACTGATTATCTTGGTTTGGTTTTAGGCCGGTCTCGGGTTCTGGGGGCCTT  632

seq1  CCCACAGAGAGAGGTCCATTTGGGTTGGTCGCAGTGACAGTGAGACATGC  657
      ||||  ||||||||||||||||||||||| ||||||||||||||||||||
seq2  CCCATGGAGAGAGGTCCATTTGGGTTGGTTGCAGTGACAGTGAGACATGC  682

seq1  C-AAAACATTGCAGGCCACAACGCTGGAGGATGCTCCGGTGTCAAGCTGG  706
      | ||||||||| ||||||||||||  || |||||| | |||||||||| |
seq2  CAAAAACATTGGAGGCCACAACGCGAGAAGATGCT-CTGTGTCAAGCTTG  731

seq1  GAAGTTGGATCTGAAACAGTCCTTCTCAACCCAGCAGCAGC-TAGGGTTC  755
      |||  ||||||||||| |||| ||||||||||||||||||| ||||||||
seq2  GAAAGTGGATCTGAAA-AGTCTTTCTCAACCCAGCAGCAGCTTAGGGTTC  780

seq1  A-GTATATTCC-TGGAACAGATAGTGTCAGGCTTCTCTGGAAATCACGTG  803
      | |||||| || |||||| |||| ||||||||||||||||||||| | ||
seq2  AGGTATATGCCTTGGAACCGATAATGTCAGGCTTCTCTGGAAATCGC-TG  829

seq1  TAAGA  808
      |||||
seq2  TAAGA  834