BAC Information

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BAC

Clone NameB6Ng01-099D10
Chromosome7 (Build37)
Map Location 148,491,728 - 148,626,176
singlet/doubletdoublet
Overlap geneDeaf1, Tmem80, Eps8l2, B230206H07Rik, Taldo1, LOC100043585, Pddc1, Cend1, Slc25a22, Lrdd
Upstream geneEG622335, Olfr525, Olfr527, GA_x5J8B7W72BC-152913-152037, Olfr60, GA_x5J8B7W72BC-125691-125311, Olfr530, LOC622973, Olfr531, Olfr532, Olfr533, Olfr534-ps1, Olfr535, Olfr536, Olfr537-ps1, Olfr1523-ps1, Olfr538, Olfr1553-ps1, Olfr46, Olfr61, Olfr53, Olfr539, GA_x5J8B7W3EKE-4574231-4574913, Olfr45, Olfr541, GA_x5J8B7W3EKE-4522784-4521912, Cyp2e1, Syce1, LOC100043529, BC066028, 1190003J15Rik, Scgb1c1, Odf3, Bet1l, Ric8, Sirt3, Psmd13, LOC100043546, Cox8b, Nlrp6, Athl1, Ifitm5, Ifitm2, Ifitm1, LOC665143, Ifitm3, Ifitm6, B4galnt4, Pkp3, Sigirr, Trp53i5, Ptdss2, Rnh1, LOC546015, Hras1, Lrrc56, 1600016N20Rik, Rassf7, AA673488, Irf7, Mucdhl, Sct, Drd4
Downstream geneRplp2, Pnpla2, Efcab4a, Cd151, Polr2l, Tspan4, Chid1, Ap2a2, Muc6, LOC100039649, Muc2, Muc5ac, Muc5b, Tollip, EG623757, Brsk2, 2700078K21Rik, Dusp8, LOC100039728, EG668763, LOC100043616, EG665295, LOC100043617, Krtap5-2, LOC100039757, LOC100039767, EG665305, Krtap5-5, EG640223, LOC672428, LOC100039800, LOC100043627, LOC100043629, ENSMUSG00000038442, Krtap5-1, Krtap5-4, LOC270015, 6330512M04Rik, Ctsd, Syt8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099D10.bB6Ng01-099D10.g
ACCDH909070DH909071
length1,161634
definitionDH909070|Mus musculus domesticus DNA, BAC clone: B6Ng01-099D10, 5' end.DH909071|Mus musculus domesticus DNA, BAC clone: B6Ng01-099D10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,491,728 - 148,492,899)(148,625,546 - 148,626,176)
sequence
gaattcagtacatacagacatatagtcccagaacctgggaggcagatgca
gcaggattgtaagttctagaccaacctgggctacacagcaaccaagaaag
aaaggtgtgtgtgcccctgtgtaagagctccaatgtccccaagtgggagt
gaaatagaacgagacagtgagggccagccgtcgtggtgcttggccatggc
tgagcattacaggctaccctgccgtcgctatctctgggtcagaaagtagc
agcactgggatgactgtccagaatggtgtctagtctaagtgttgctgatg
gacaagctgcaggtagaatggtgactcccaggagcattcccaagggtcct
cagaggagacggaagggagggatgcccatctcctccctgaacacctactt
cagaagtgcagcatgagggcggactggggtggaggacattcttcttttca
gacccatccaggcagaattccaaaggccctttgtccagcaccatggctgt
ccctttaaggcagcagctctgcttttgcaggcgtggcctccacaggttac
acagaggatgagagggaagctggctggtatccggacgctggaagaaactg
ccagaacctggcctacataaacacctgaagcctgataactgaaagtagga
aagctgggggctagagagctggctcaccgggtaagagcactggctgctct
actacaggaccagagttcaattctcagcacccacatggcaacacaactgt
ctataactccagtttcaagggatctgacaccctcacacagccagacacac
aaaacaccaatatataaaaaaataaaagtaggtaaatcattaacaaaaca
aaacaaaaacaaaaacatgtgctagagagatggctcagtgggtaagaaca
ctgactactcttccagaggttctgagttcatttcccagcaaccacatggt
ggctcacaaccatctgtaatgagatctgacgtcctctttctggtgtttct
gaagacagctacatgtatgttttataataaaataaataaatttttttaaa
atctagctggttaaaaaagtatgacagctgtgtgctatgtgttgctgctc
tgtgctgcatgttgcatggccgatactgcatgctgtgtgtgcactgaatg
ctctgattgtg
gaattcacccacctgtatgcacgcttccaggtcacgcacttctcctggtc
agtgtcccctagcttccgcaggaccccttctgcccttcctctgtatggcc
acacctcaactctggcacttccaggtactggctctggtataccaccaaaa
cctgtgtggggggcctggcccggaaggcctgggaacggctgcgactgcac
cgtgtgaatctcattgcactgcagaggcgccgagaccctgagcaggttct
gctgcagtgcctgccacggaacaaggtggggcagcaggaagacagagggg
tgacctgaaggccaggctgggtacaaagctttggcctctgatccctggtg
ggtgccccacaggtagatgccaccctgagtcggctgctggttcgctaccg
tggccctgaaccctctgagactgtggagatgtttgagggtgagaagttct
ttgcagcctttgagcggggcattgatgtagatgcaggtaggtctcttttc
cagggtgccctggggagtgacactttggcccctcctactgatttgcttct
cccccctgcctcccccaaccccccgcccccccccaccataccgtttttta
ctgtgtgggatggcagaatctgctttgttttcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_148491728_148492899
seq2: B6Ng01-099D10.b_49_1209

seq1  GAATTCAGTACATACAGACATATAGTCCCAGAACCTGGGAGGCAGATGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTACATACAGACATATAGTCCCAGAACCTGGGAGGCAGATGCA  50

seq1  GCAGGATTGTAAGTTCTAGACCAACCTGGGCTACACAGCAACCAAGAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGATTGTAAGTTCTAGACCAACCTGGGCTACACAGCAACCAAGAAAG  100

seq1  AAAGGTGTGTGTGCCCCTGTGTAAGAGCTCCAATGTCCCCAAGTGGGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTGTGTGTGCCCCTGTGTAAGAGCTCCAATGTCCCCAAGTGGGAGT  150

seq1  GAAATAGAACGAGACAGTGAGGGCCAGCCGTCGTGGTGCTTGGCCATGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAGAACGAGACAGTGAGGGCCAGCCGTCGTGGTGCTTGGCCATGGC  200

seq1  TGAGCATTACAGGCTACCCTGCCGTCGCTATCTCTGGGTCAGAAAGTAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCATTACAGGCTACCCTGCCGTCGCTATCTCTGGGTCAGAAAGTAGC  250

seq1  AGCACTGGGATGACTGTCCAGAATGGTGTCTAGTCTAAGTGTTGCTGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGGGATGACTGTCCAGAATGGTGTCTAGTCTAAGTGTTGCTGATG  300

seq1  GACAAGCTGCAGGTAGAATGGTGACTCCCAGGAGCATTCCCAAGGGTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGCTGCAGGTAGAATGGTGACTCCCAGGAGCATTCCCAAGGGTCCT  350

seq1  CAGAGGAGACGGAAGGGAGGGATGCCCATCTCCTCCCTGAACACCTACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGAGACGGAAGGGAGGGATGCCCATCTCCTCCCTGAACACCTACTT  400

seq1  CAGAAGTGCAGCATGAGGGCGGACTGGGGTGGAGGACATTCTTCTTTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTGCAGCATGAGGGCGGACTGGGGTGGAGGACATTCTTCTTTTCA  450

seq1  GACCCATCCAGGCAGAATTCCAAAGGCCCTTTGTCCAGCACCATGGCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCATCCAGGCAGAATTCCAAAGGCCCTTTGTCCAGCACCATGGCTGT  500

seq1  CCCTTTAAGGCAGCAGCTCTGCTTTTGCAGGCGTGGCCTCCACAGGTTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTAAGGCAGCAGCTCTGCTTTTGCAGGCGTGGCCTCCACAGGTTAC  550

seq1  ACAGAGGATGAGAGGGAAGCTGGCTGGTATCCGGACGCTGGAAGAAACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGGATGAGAGGGAAGCTGGCTGGTATCCGGACGCTGGAAGAAACTG  600

seq1  CCAGAACCTGGCCTACATAAACACCTGAAGCCTGATAACTGAAAGTAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAACCTGGCCTACATAAACACCTGAAGCCTGATAACTGAAAGTAGGA  650

seq1  AAGCTGGGGGCTAGAGAGCTGGCTCACCGGGTAAGAGCACTGGCTGCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGGGGGCTAGAGAGCTGGCTCACCGGGTAAGAGCACTGGCTGCTCT  700

seq1  ACTACAGGACCAGAGTTCAATTCTCAGCACCCACATGGCAACACAACTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAGGACCAGAGTTCAATTCTCAGCACCCACATGGCAACACAACTGT  750

seq1  CTATAACTCCAGTTTCAAGGGATCTGACACCCTCACACAGCCAGACACAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAACTCCAGTTTCAAGGGATCTGACACCCTCACACAGCCAGACACAC  800

seq1  AAAACACCAATATATAAAAAAATAAAAGTAGGTAAATCATTAAACAAAAC  850
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AAAACACCAATATATAAAAAAATAAAAGTAGGTAAATCATT-AACAAAAC  849

seq1  AAAACAAAAACAAAAACATGTGCTAGAGAGATGGCTCAGTGGTTAAGAAC  900
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AAAACAAAAACAAAAACATGTGCTAGAGAGATGGCTCAGTGGGTAAGAAC  899

seq1  ACTGACTACTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGG  950
      ||||||||||||||||||||| ||||||||| ||||||||||||||||||
seq2  ACTGACTACTCTTCCAGAGGTTCTGAGTTCATTTCCCAGCAACCACATGG  949

seq1  TGGCTCACAACCATCTGTAATGAGATCTGACGTCCTC-TTCTGGTGTGTC  999
      ||||||||||||||||||||||||||||||||||||| ||||||||| ||
seq2  TGGCTCACAACCATCTGTAATGAGATCTGACGTCCTCTTTCTGGTGTTTC  999

seq1  TGAAGACAGCTACAGTGTATGTATTTATAATAAAATAAATAAATCTTTTT  1049
      |||||||||||||| ||||||| ||||||||||||||||||||| |||||
seq2  TGAAGACAGCTACA-TGTATGT-TTTATAATAAAATAAATAAATTTTTTT  1047

seq1  AAAAAATCTAAGCTGTTAAAAAAAAGTATGACAGCTGTGTGCTATGTGTT  1099
        ||||||| ||||| |  |||||||||||||||||||||||||||||||
seq2  --AAAATCT-AGCTGGT-TAAAAAAGTATGACAGCTGTGTGCTATGTGTT  1093

seq1  GCATGCTCTGTGCTGCATGTTGCATGCCGTATACTGCATGCTGTATGTTG  1149
      || ||||||||||||||||||||||| |  ||||||||||||||    ||
seq2  GC-TGCTCTGTGCTGCATGTTGCATGGCCGATACTGCATGCTGT---GTG  1139

seq1  TGCACTGAGTGCTCTGTATTGTG  1172
      |||||||| ||||||| ||||||
seq2  TGCACTGAATGCTCTG-ATTGTG  1161

seq1: chr7_148625546_148626176
seq2: B6Ng01-099D10.g_68_701 (reverse)

seq1  TAGAAGACAAAGCAGATTCTGCCAT-CCACACAGT-CTGGACGGTCTGGT  48
      ||||| ||||||||||||||||||| |||||||||     ||||| ||||
seq2  TAGAAAACAAAGCAGATTCTGCCATCCCACACAGTAAAAAACGGTATGGT  50

seq1  -GGGGGGGGCGGGGGGTTGGGGGAGGCAGGGGGGAGAAGCAAATCAGTAG  97
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGGGGCGGGGGGTTGGGGGAGGCAGGGGGGAGAAGCAAATCAGTAG  100

seq1  GAGGGGCCAAAGTGTCACTCCCCAGGGCACCCTGGAAAAGAGACCTACCT  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGCCAAAGTGTCACTCCCCAGGGCACCCTGGAAAAGAGACCTACCT  150

seq1  GCATCTACATCAATGCCCCGCTCAAAGGCTGCAAAGAACTTCTCACCCTC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTACATCAATGCCCCGCTCAAAGGCTGCAAAGAACTTCTCACCCTC  200

seq1  AAACATCTCCACAGTCTCAGAGGGTTCAGGGCCACGGTAGCGAACCAGCA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATCTCCACAGTCTCAGAGGGTTCAGGGCCACGGTAGCGAACCAGCA  250

seq1  GCCGACTCAGGGTGGCATCTACCTGTGGGGCACCCACCAGGGATCAGAGG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGACTCAGGGTGGCATCTACCTGTGGGGCACCCACCAGGGATCAGAGG  300

seq1  CCAAAGCTTTGTACCCAGCCTGGCCTTCAGGTCACCCCTCTGTCTTCCTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGCTTTGTACCCAGCCTGGCCTTCAGGTCACCCCTCTGTCTTCCTG  350

seq1  CTGCCCCACCTTGTTCCGTGGCAGGCACTGCAGCAGAACCTGCTCAGGGT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCCACCTTGTTCCGTGGCAGGCACTGCAGCAGAACCTGCTCAGGGT  400

seq1  CTCGGCGCCTCTGCAGTGCAATGAGATTCACACGGTGCAGTCGCAGCCGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGCGCCTCTGCAGTGCAATGAGATTCACACGGTGCAGTCGCAGCCGT  450

seq1  TCCCAGGCCTTCCGGGCCAGGCCCCCCACACAGGTTTTGGTGGTATACCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGCCTTCCGGGCCAGGCCCCCCACACAGGTTTTGGTGGTATACCA  500

seq1  GAGCCAGTACCTGGAAGTGCCAGAGTTGAGGTGTGGCCATACAGAGGAAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAGTACCTGGAAGTGCCAGAGTTGAGGTGTGGCCATACAGAGGAAG  550

seq1  GGCAGAAGGGGTCCTGCGGAAGCTAGGGGACACTGACCAGGAGAAGTGCG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAAGGGGTCCTGCGGAAGCTAGGGGACACTGACCAGGAGAAGTGCG  600

seq1  TGACCTGGAAGCGTGCATACAGGTGGGTGAATTC  631
      ||||||||||||||||||||||||||||||||||
seq2  TGACCTGGAAGCGTGCATACAGGTGGGTGAATTC  634